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Aalto University School of Science Department of Computer Science Semantic Computing Research Group Supervising professor Eero Hyvönen Thesis advisor Eero Hyvönen Preliminary examiners Professor Vagan Terziyan, University of Jyväskylä, Finland Professor Mathieu d'Aquin, National University of Ireland Galway, Ireland Opponent Professor Marcia Lei Zeng, Kent State University, United States Aalto University publication series DOCTORAL DISSERTATIONS 101/2017 © Jouni Tuominen ISBN 978-952-60-7456-6 (printed) ISBN 978-952-60-7455-9 (pdf) ISSN-L 1799-4934 ISSN 1799-4934 (printed) ISSN 1799-4942 (pdf) http://urn.fi/URN:ISBN:978-952-60-7455-9 Unigrafia Oy Helsinki 2017 Finland Abstract Aalto University, P.O. Box 11000, FI-00076 Aalto www.aalto.fi Author Jouni Tuominen Name of the doctoral dissertation Ontology Services for Knowledge Organization Systems Publisher School of Science Unit Department of Computer Science Series Aalto University publication series DOCTORAL DISSERTATIONS 101/2017 Field of research Knowledge Technology Manuscript submitted 12 March 2017 Date of the defence 16 June 2017 Permission to publish granted (date) 25 April 2017 Language English Monograph Article dissertation Essay dissertation Abstract Ontologies and other knowledge organization systems, such as controlled vocabularies, can be used to enhance the findability of information. By describing the contents of documents using a shared, harmonized terminology, information systems can provide efficient search and browsing functionalities for the contents. Explicit descriptive metadata aims to solve some of the prevailing issues in full text search in many search engines, including the processing of synonyms and homonyms. The use of ontologies as domain models enables the machine-processability of contents, semantic reasoning, information integration, and other intelligent ways of processing the data. The utilization of knowledge organization systems in content indexing and information retrieval can be facilitated by providing automated tools for their efficient use. This thesis studies and presents novel methods and systems for publishing and using knowledge organization systems as ontology services. The research is conducted by designing and evaluating prototype systems that support the use of ontologies in real-life use cases. The research follows the principles of the design science and action research methodologies. The presented ONKI system provides user interface components and application programming interfaces that can be integrated into external applications to enable ontology-based workflows. The features of the system are based on analyzing the needs of the main user groups of ontologies. The common functionalities identified in ontology-based workflows include concept search, browsing, and selection. The thesis presents the Linked Open Ontology cloud approach for managing and publishing a set of interlinked ontologies in an ontology service.
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    A peer-reviewed open-access journal ZooKeysSinopyrophorinae, 864: 79–97 (2019) a new subfamily of Elateridae (Coleoptera, Elateroidea) with the first ... 79 doi: 10.3897/zookeys.864.26689 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Sinopyrophorinae, a new subfamily of Elateridae (Coleoptera, Elateroidea) with the first record of a luminous click beetle in Asia and evidence for multiple origins of bioluminescence in Elateridae Wen-Xuan Bi1,2*, Jin-Wu He1*, Chang-Chin Chen3, Robin Kundrata4, Xue-Yan Li1 1 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China 2 Room 401, No. 2, Lane 155, Lianhua South Road, Shanghai, 201100, China 3 NPS office, Tianjin New Wei San Industrial Company, Ltd., Tianjing, China 4 Department of Zoology, Faculty of Science, Palacky University, 17. listopadu 50, 77146, Olomouc, Czech Republic Corresponding author: Xue-Yan Li ([email protected]), Wen-Xuan Bi ([email protected]) Academic editor: Hume Douglas | Received 15 May 2018 | Accepted 15 May 2019 | Published 17 July 2019 http://zoobank.org/AA8F1ECD-15EF-4EC7-9F32-6AA081370598 Citation: Bi W-X, He J-W, Chen C-C, Kundrata R, Li X-Y (2019) Sinopyrophorinae, a new subfamily of Elateridae (Coleoptera, Elateroidea) with the first record of a luminous click beetle in Asia and evidence for multiple origins of bioluminescence in Elateridae. ZooKeys 864: 79–97. https://doi.org/10.3897/zookeys.864.26689 Abstract The new subfamily Sinopyrophorinae within Elateridae is proposed to accommodate a bioluminescent species, Sinopyrophorus schimmeli Bi & Li, gen. et sp.