Exploring the Diversity and Traits of Lichen Propagules Across the United States Erin A
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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
The Lichens' Microbiota, Still a Mystery?
fmicb-12-623839 March 24, 2021 Time: 15:25 # 1 REVIEW published: 30 March 2021 doi: 10.3389/fmicb.2021.623839 The Lichens’ Microbiota, Still a Mystery? Maria Grimm1*, Martin Grube2, Ulf Schiefelbein3, Daniela Zühlke1, Jörg Bernhardt1 and Katharina Riedel1 1 Institute of Microbiology, University Greifswald, Greifswald, Germany, 2 Institute of Plant Sciences, Karl-Franzens-University Graz, Graz, Austria, 3 Botanical Garden, University of Rostock, Rostock, Germany Lichens represent self-supporting symbioses, which occur in a wide range of terrestrial habitats and which contribute significantly to mineral cycling and energy flow at a global scale. Lichens usually grow much slower than higher plants. Nevertheless, lichens can contribute substantially to biomass production. This review focuses on the lichen symbiosis in general and especially on the model species Lobaria pulmonaria L. Hoffm., which is a large foliose lichen that occurs worldwide on tree trunks in undisturbed forests with long ecological continuity. In comparison to many other lichens, L. pulmonaria is less tolerant to desiccation and highly sensitive to air pollution. The name- giving mycobiont (belonging to the Ascomycota), provides a protective layer covering a layer of the green-algal photobiont (Dictyochloropsis reticulata) and interspersed cyanobacterial cell clusters (Nostoc spec.). Recently performed metaproteome analyses Edited by: confirm the partition of functions in lichen partnerships. The ample functional diversity Nathalie Connil, Université de Rouen, France of the mycobiont contrasts the predominant function of the photobiont in production Reviewed by: (and secretion) of energy-rich carbohydrates, and the cyanobiont’s contribution by Dirk Benndorf, nitrogen fixation. In addition, high throughput and state-of-the-art metagenomics and Otto von Guericke University community fingerprinting, metatranscriptomics, and MS-based metaproteomics identify Magdeburg, Germany Guilherme Lanzi Sassaki, the bacterial community present on L. -
St Kilda Lichen Survey April 2014
A REPORT TO NATIONAL TRUST FOR SCOTLAND St Kilda Lichen Survey April 2014 Andy Acton, Brian Coppins, John Douglass & Steve Price Looking down to Village Bay, St. Kilda from Glacan Conachair Andy Acton [email protected] Brian Coppins [email protected] St. Kilda Lichen Survey Andy Acton, Brian Coppins, John Douglass, Steve Price Table of Contents 1 INTRODUCTION ............................................................................................................ 3 1.1 Background............................................................................................................. 3 1.2 Study areas............................................................................................................. 4 2 METHODOLOGY ........................................................................................................... 6 2.1 Field survey ............................................................................................................ 6 2.2 Data collation, laboratory work ................................................................................ 6 2.3 Ecological importance ............................................................................................. 7 2.4 Constraints ............................................................................................................. 7 3 RESULTS SUMMARY ................................................................................................... 8 4 MARITIME GRASSLAND (INCLUDING SWARDS DOMINATED BY PLANTAGO MARITIMA AND ARMERIA -
Cetrarioid Lichen Genera and Species in NE China
Ann. Bot. Fennici 46: 365–380 ISSN 0003-3847 (print) ISSN 1797-2442 (online) Helsinki 30 October 2009 © Finnish Zoological and Botanical Publishing Board 2009 Cetrarioid lichen genera and species in NE China Ming-Jou Lai, Xi-Ling Chen1, Zhi-Guang Qian2 , Lei Xu3 & Teuvo Ahti4,* 1) Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China 2) Shanghai Scienceland & Shanghai Museum of Natural History, Pudong New Area, Shanghai 201204, China 3) Tunghai University, P.O. Box 834, Taichung, Taiwan 407, China 4) Botanical Museum, Finnish Museum of Natural History, P.O. Box 7, FI-00014 University of Helsinki, Finland (*corresponding author’s e-mail: [email protected]) Received 5 Apr. 2007, revised version received 28 Apr. 2009, accepted 11 Sep. 2008 Lai, M. J., Chen, X. L., Qian, Z. G., Xu, L. & Ahti, T. 2009: Cetrarioid lichen genera and species in NE China. — Ann. Bot. Fennici 46: 365–380. Twenty-five species in ten cetrarioid lichen genera belonging to the family Parme- liaceae are reported for the lichen flora of NE China. Keys to the genera and species as well as short descriptions are given. Cetrelia japonica, Tuckermannopsis americana and T. ulophylloides are reported as new to China. Seven additional species are new to NE China. Nephromopsis endocrocea is excluded from the lichen flora of China. Key words: Asia, biodiversity, floristics, lichenized Ascomycetes Professor Ming-Jou Lai, the first author of the cetrarioid lichens for NE China. present article, sadly passed away soon after sub- Geographically NE China comprises the mitting the manuscript to Annales Botanici Fen- eastern part of Neimenggu (Inner Mongolia) nici. -
Opuscula Philolichenum, 6: 1-XXXX
Opuscula Philolichenum, 15: 56-81. 2016. *pdf effectively published online 25July2016 via (http://sweetgum.nybg.org/philolichenum/) Lichens, lichenicolous fungi, and allied fungi of Pipestone National Monument, Minnesota, U.S.A., revisited M.K. ADVAITA, CALEB A. MORSE1,2 AND DOUGLAS LADD3 ABSTRACT. – A total of 154 lichens, four lichenicolous fungi, and one allied fungus were collected by the authors from 2004 to 2015 from Pipestone National Monument (PNM), in Pipestone County, on the Prairie Coteau of southwestern Minnesota. Twelve additional species collected by previous researchers, but not found by the authors, bring the total number of taxa known for PNM to 171. This represents a substantial increase over previous reports for PNM, likely due to increased intensity of field work, and also to the marked expansion of corticolous and anthropogenic substrates since the site was first surveyed in 1899. Reexamination of 116 vouchers deposited in MIN and the PNM herbarium led to the exclusion of 48 species previously reported from the site. Crustose lichens are the most common growth form, comprising 65% of the lichen diversity. Sioux Quartzite provided substrate for 43% of the lichen taxa collected. Saxicolous lichen communities were characterized by sampling four transects on cliff faces and low outcrops. An annotated checklist of the lichens of the site is provided, as well as a list of excluded taxa. We report 24 species (including 22 lichens and two lichenicolous fungi) new for Minnesota: Acarospora boulderensis, A. contigua, A. erythrophora, A. strigata, Agonimia opuntiella, Arthonia clemens, A. muscigena, Aspicilia americana, Bacidina delicata, Buellia tyrolensis, Caloplaca flavocitrina, C. lobulata, C. -
A New Species of Allocetraria (Parmeliaceae, Ascomycota) in China
The Lichenologist 47(1): 31–34 (2015) 6 British Lichen Society, 2015 doi:10.1017/S0024282914000528 A new species of Allocetraria (Parmeliaceae, Ascomycota) in China Rui-Fang WANG, Xin-Li WEI and Jiang-Chun WEI Abstract: Allocetraria yunnanensis R. F. Wang, X. L. Wei & J. C. Wei is described as a new species from the Yunnan Province of China, and is characterized by having a shiny upper surface, strongly wrinkled lower surface, and marginal pseudocyphellae present on the lower side in the form of a white continuous line or spot. The phylogenetic analysis based on nrDNA ITS sequences suggests that the new species is related to A. sinensis X. Q. Gao. Key words: Allocetraria yunnanensis, lichen, taxonomy Accepted for publication 26 June 2014 Introduction genus, as all ten species have been reported there (Kurokawa & Lai 1991; Thell et al. The lichenized genus Allocetraria Kurok. & 1995; Randlane et al. 2001; Wang et al. M. J. Lai was described in 1991, with a new 2014). During our taxonomic study of Allo- species A. isidiigera Kurok. & M. J. Lai, and cetraria, a new species was found. two new combinations: A. ambigua (C. Bab.) Kurok. & M. J. Lai and A. stracheyi (C. Bab.) Kurok. & M. J. Lai (Kurokawa & Lai 1991). The main distribution area of Allocetraria Materials and Methods species was reported to be in the Himalayas, A dissecting microscope (ZEISS Stemi SV11) and com- including China, India, and Nepal. pound microscope (ZEISS Axioskop 2 plus) were used Allocetraria is characterized by dichoto- to study the morphology and anatomy of the specimens. Colour test reagents [10% aqueous KOH, saturated mously or subdichotomously branched lobes aqueous Ca(OCl)2, and concentrated alcoholic p- and a foliose to suberect or erect thallus with phenylenediamine] and thin-layer chromatography sparse rhizines, angular to sublinear pseudo- (TLC, solvent system C) were used for the detection cyphellae, palisade plectenchymatous upper of lichen substances (Culberson & Kristinsson 1970; Culberson 1972). -
Pannariaceae Generic Taxonomy LL Ver. 27.9.2013.Docx
http://www.diva-portal.org Preprint This is the submitted version of a paper published in The Lichenologist. Citation for the original published paper (version of record): Ekman, S. (2014) Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota). The Lichenologist, 46: 627-656 http://dx.doi.org/10.1017/S002428291400019X Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:nrm:diva-943 Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota) Stefan EKMAN, Mats WEDIN, Louise LINDBLOM & Per M. JØRGENSEN S. Ekman (corresponding author): Museum of Evolution, Uppsala University, Norbyvägen 16, SE –75236 Uppsala, Sweden. Email: [email protected] M. Wedin: Dept. of Botany, Swedish Museum of Natural History, Box 50007, SE –10405 Stockholm, Sweden. L. Lindblom and P. M. Jørgensen: Dept. of Natural History, University Museum of Bergen, Box 7800, NO –5020 Bergen, Norway. Abstract: We estimated phylogeny in the lichen-forming ascomycete family Pannariaceae. We specifically modelled spatial (across-site) heterogeneity in nucleotide frequencies, as models not incorporating this heterogeneity were found to be inadequate for our data. Model adequacy was measured here as the ability of the model to reconstruct nucleotide diversity per site in the original sequence data. A potential non-orthologue in the internal transcribed spacer region (ITS) of Degelia plumbea was observed. We propose a revised generic classification for the Pannariaceae, accepting 30 genera, based on our phylogeny, previously published phylogenies, as well as morphological and chemical data available. -
Fungal-Algal Interactions in Ramalina Menziesii and Its Associated Epiphytic Lichen Community
The Lichenologist 44(4): 543–560 (2012) 6 British Lichen Society, 2012 doi:10.1017/S0024282912000138 Fungal-algal interactions in Ramalina menziesii and its associated epiphytic lichen community Silke WERTH Abstract: Lichens are a fascinating example of a symbiotic mutualism. It is still uncertain which processes guide fungal-photobiont interactions, and whether they are random or of a more complex nature. Here, the fungal-algal interactions in Ramalina menziesii and co-occurring taxa are analyzed by using DNA sequences of the algal Internal Transcribed Spacer region (ITS), to investigate fungal- algal associations in juvenile R. menziesii and allied species. Algal species were identified by a com- bination of BLAST searches, median-joining network analysis, and Bayesian phylogenetics. Fungal- algal networks were analyzed for nestedness, both at the species and haplotype level (fungal species vs. algal haplotypes), and the networks were inspected for evidence of compartmentalization. Bayesian phylogenetic trees indicated that the widespread green alga Trebouxia decolorans associated with R. menziesii, as well as six other fungal species. Four additional fungal species interacted with four different species of Trebouxia. Only in one out of ten samples were algal haplotypes shared with the nearest neighbours of juvenile R. menziesii. Fungal-algal species interactions were compartmen- talized, while at the level of algal haplotypes, nestedness was found. This pattern is similar to the compartmentalization found in other intimately interacting mutualists. Key words: compartmentalization, lichen-forming fungi, nestedness, photobiont, species interactions, specificity, symbiosis Accepted for publication 7 February 2012 Introduction one-to-one species, as well as haplotype in- teractions, have been analyzed in the lichen Species interactions are a major factor struc- symbiosis. -
Revisions of British and Irish Lichens
Revisions of British and Irish Lichens Volume 9 February 2021 Peltigerales: Pannariaceae Cover image: Pectenia atlantica, on bark of Fraxinus excelsior, Strath Croe, Kintail, Wester Ross. Revisions of British and Irish Lichens is a free-to-access serial publication under the auspices of the British Lichen Society, that charts changes in our understanding of the lichens and lichenicolous fungi of Great Britain and Ireland. Each volume will be devoted to a particular family (or group of families), and will include descriptions, keys, habitat and distribution data for all the species included. The maps are based on information from the BLS Lichen Database, that also includes data from the historical Mapping Scheme and the Lichen Ireland database. The choice of subject for each volume will depend on the extent of changes in classification for the families concerned, and the number of newly recognized species since previous treatments. To date, accounts of lichens from our region have been published in book form. However, the time taken to compile new printed editions of the entire lichen biota of Britain and Ireland is extensive, and many parts are out-of-date even as they are published. Issuing updates as a serial electronic publication means that important changes in understanding of our lichens can be made available with a shorter delay. The accounts may also be compiled at intervals into complete printed accounts, as new editions of the Lichens of Great Britain and Ireland. Editorial Board Dr P.F. Cannon (Department of Taxonomy & Biodiversity, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK). Dr A. Aptroot (Laboratório de Botânica/Liquenologia, Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Avenida Costa e Silva s/n, Bairro Universitário, CEP 79070-900, Campo Grande, MS, Brazil) Dr B.J. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
BLS Bulletin 111 Winter 2012.Pdf
1 BRITISH LICHEN SOCIETY OFFICERS AND CONTACTS 2012 PRESIDENT B.P. Hilton, Beauregard, 5 Alscott Gardens, Alverdiscott, Barnstaple, Devon EX31 3QJ; e-mail [email protected] VICE-PRESIDENT J. Simkin, 41 North Road, Ponteland, Newcastle upon Tyne NE20 9UN, email [email protected] SECRETARY C. Ellis, Royal Botanic Garden, 20A Inverleith Row, Edinburgh EH3 5LR; email [email protected] TREASURER J.F. Skinner, 28 Parkanaur Avenue, Southend-on-Sea, Essex SS1 3HY, email [email protected] ASSISTANT TREASURER AND MEMBERSHIP SECRETARY H. Döring, Mycology Section, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, email [email protected] REGIONAL TREASURER (Americas) J.W. Hinds, 254 Forest Avenue, Orono, Maine 04473-3202, USA; email [email protected]. CHAIR OF THE DATA COMMITTEE D.J. Hill, Yew Tree Cottage, Yew Tree Lane, Compton Martin, Bristol BS40 6JS, email [email protected] MAPPING RECORDER AND ARCHIVIST M.R.D. Seaward, Department of Archaeological, Geographical & Environmental Sciences, University of Bradford, West Yorkshire BD7 1DP, email [email protected] DATA MANAGER J. Simkin, 41 North Road, Ponteland, Newcastle upon Tyne NE20 9UN, email [email protected] SENIOR EDITOR (LICHENOLOGIST) P.D. Crittenden, School of Life Science, The University, Nottingham NG7 2RD, email [email protected] BULLETIN EDITOR P.F. Cannon, CABI and Royal Botanic Gardens Kew; postal address Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, email [email protected] CHAIR OF CONSERVATION COMMITTEE & CONSERVATION OFFICER B.W. Edwards, DERC, Library Headquarters, Colliton Park, Dorchester, Dorset DT1 1XJ, email [email protected] CHAIR OF THE EDUCATION AND PROMOTION COMMITTEE: S. -
One Hundred New Species of Lichenized Fungi: a Signature of Undiscovered Global Diversity
Phytotaxa 18: 1–127 (2011) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Monograph PHYTOTAXA Copyright © 2011 Magnolia Press ISSN 1179-3163 (online edition) PHYTOTAXA 18 One hundred new species of lichenized fungi: a signature of undiscovered global diversity H. THORSTEN LUMBSCH1*, TEUVO AHTI2, SUSANNE ALTERMANN3, GUILLERMO AMO DE PAZ4, ANDRÉ APTROOT5, ULF ARUP6, ALEJANDRINA BÁRCENAS PEÑA7, PAULINA A. BAWINGAN8, MICHEL N. BENATTI9, LUISA BETANCOURT10, CURTIS R. BJÖRK11, KANSRI BOONPRAGOB12, MAARTEN BRAND13, FRANK BUNGARTZ14, MARCELA E. S. CÁCERES15, MEHTMET CANDAN16, JOSÉ LUIS CHAVES17, PHILIPPE CLERC18, RALPH COMMON19, BRIAN J. COPPINS20, ANA CRESPO4, MANUELA DAL-FORNO21, PRADEEP K. DIVAKAR4, MELIZAR V. DUYA22, JOHN A. ELIX23, ARVE ELVEBAKK24, JOHNATHON D. FANKHAUSER25, EDIT FARKAS26, LIDIA ITATÍ FERRARO27, EBERHARD FISCHER28, DAVID J. GALLOWAY29, ESTER GAYA30, MIREIA GIRALT31, TREVOR GOWARD32, MARTIN GRUBE33, JOSEF HAFELLNER33, JESÚS E. HERNÁNDEZ M.34, MARÍA DE LOS ANGELES HERRERA CAMPOS7, KLAUS KALB35, INGVAR KÄRNEFELT6, GINTARAS KANTVILAS36, DOROTHEE KILLMANN28, PAUL KIRIKA37, KERRY KNUDSEN38, HARALD KOMPOSCH39, SERGEY KONDRATYUK40, JAMES D. LAWREY21, ARMIN MANGOLD41, MARCELO P. MARCELLI9, BRUCE MCCUNE42, MARIA INES MESSUTI43, ANDREA MICHLIG27, RICARDO MIRANDA GONZÁLEZ7, BIBIANA MONCADA10, ALIFERETI NAIKATINI44, MATTHEW P. NELSEN1, 45, DAG O. ØVSTEDAL46, ZDENEK PALICE47, KHWANRUAN PAPONG48, SITTIPORN PARNMEN12, SERGIO PÉREZ-ORTEGA4, CHRISTIAN PRINTZEN49, VÍCTOR J. RICO4, EIMY RIVAS PLATA1, 50, JAVIER ROBAYO51, DANIA ROSABAL52, ULRIKE RUPRECHT53, NORIS SALAZAR ALLEN54, LEOPOLDO SANCHO4, LUCIANA SANTOS DE JESUS15, TAMIRES SANTOS VIEIRA15, MATTHIAS SCHULTZ55, MARK R. D. SEAWARD56, EMMANUËL SÉRUSIAUX57, IMKE SCHMITT58, HARRIE J. M. SIPMAN59, MOHAMMAD SOHRABI 2, 60, ULRIK SØCHTING61, MAJBRIT ZEUTHEN SØGAARD61, LAURENS B. SPARRIUS62, ADRIANO SPIELMANN63, TOBY SPRIBILLE33, JUTARAT SUTJARITTURAKAN64, ACHRA THAMMATHAWORN65, ARNE THELL6, GÖRAN THOR66, HOLGER THÜS67, EINAR TIMDAL68, CAMILLE TRUONG18, ROMAN TÜRK69, LOENGRIN UMAÑA TENORIO17, DALIP K.