The Role of Citrullination in the Development of Mouse and Human Inflammatory

Total Page:16

File Type:pdf, Size:1020Kb

The Role of Citrullination in the Development of Mouse and Human Inflammatory THE ROLE OF CITRULLINATION IN THE DEVELOPMENT OF MOUSE AND HUMAN INFLAMMATORY ARTHRITIS by VAN CRANSTON WILLIS B.S., Brigham Young University, 2007 A thesis submitted to the Faculty of the Graduate School of the University of Colorado in partial fulfillment of the requirements for the degree of Doctor of Philosophy Molecular Biology Program 2012 This thesis for the Doctor of Philosophy degree by Van Cranston Willis has been approved for the Molecular Biology Program by James DeGregori, Chair V. Michael Holers, Advisor Kevin Deane Kathryn Haskins Linda van Dyk Date 11/20/12 ii Willis, Van, Cranston (Ph.D., Molecular Biology) The Role of Citrullination in the Development of Mouse and Human Inflammatory Arthritis Thesis directed by Professor V. Michael Holers ABSTRACT Rheumatoid arthritis (RA) is associated with the development of autoantibodies to citrullinated protein antigens (ACPAs). Citrullination is the post-translational modification of arginine residues into citrulline by protein arginine deiminases (PADs). ACPAs can be present years before the onset of clinical disease and represent an increased risk for future development of RA. While high ACPA titers are associated with increased disease severity, the fact that ACPAs are present for years prior to the onset of clinically apparent disease questions their contribution, and the contribution of citrullination, to the pathogenesis of RA. In order to understand the contribution of ACPAs and citrullinated epitopes to the pathogenesis of disease, mice with collagen- induced arthritis (CIA) were treated with the PAD inhibitors Cl-amidine, a pan-PAD inhibitor, or GSK283, a PAD4 inhibitor. Mice treated with either PAD inhibitor showed reduced clinical and histological disease severity, eptiope spreading, and in the case of Cl-amidine, total citrulline levels in the joint and serum. Interestingly epitope spreading in mice treated with PAD inhibitors was reduced in a citrulline-independent manner, suggesting that the ameliorative effects of PAD inhibitor treatment are not necessarily derived from the elimination of citrullinated epitopes and/or ACPA. Cl-amidine treatment failed to ameliorate collagen antibody-induced arthritis (CAIA), suggesting that the effector phase of the arthritis response is unaffected by PAD inhibition. As part of a iii CCTSI-funded clinical research project, sputum samples were obtained from subjects at- risk for the future development of RA. These samples were evaluated for the presence of RA-related autoantibodies (ACPAs and rheumatoid factors [RF]) to test the hypothesis that autoimmunity may begin in the lung in RA. RA-related autoantibodies were detected in the sputa of at-risk subjects as well as patients with early RA (≤ 1 year of diagnosis) as compared to healthy controls. Furthermore, the detection of RA-related autoantibodies in the absence of serological detection of these same autoantibodies suggests that in in some subjects, RA may begin in the lung. Together these data suggest that PAD inhibition ameliorates disease by altering the immune response more broadly than eliminating citrullinated epitope availability and that in some cases RA may begin in the lung. The form and content of this abstract are approved. I recommend its publication. Approved: V. Michael Holers iv TABLE OF CONTENTS CHAPTER I. INTRODUCTION............................................................................................................1 General overview of rheumatoid arthritis..........................................................1 General disease background. .................................................................1 Genetic contributions.............................................................................1 Environmental contributions and citrullination.....................................3 Extra articular manifestations of disease...............................................5 Protein Arginine Deiminases (PADs)....................................................7 Antibodies to Citrullinated Protein Antigens (ACPAs). .......................8 Summary of pathogenesis....................................................................10 PAD inhibitors as a tool to investigate the pathogenesis of disease......................11 Animal models of disease......................................................................................13 Dissertation aims ...................................................................................................14 II. MATERIALS AND METHODS..................................................................................15 Mice.......................................................................................................................15 Collagen-induced arthritis .....................................................................................15 Collagen antibody-induced arthritis ......................................................................16 PAD inhibitor treatments.......................................................................................17 Measurement of total citrulline..............................................................................17 Synovial proteome autoantibody microarrays.......................................................18 Autoantigen reactivity by ELISA..........................................................................19 Flow cytometric analysis of immune cell populations ..........................................19 Measurement of antibodies....................................................................................20 Measurement of antibody-producing cells ............................................................21 v mRNA isolation and determination of transcript expression ................................22 Evaluation of antigen presentation ........................................................................23 Determination of macrophage polarization ...........................................................24 Human subjects recruitment and consent ..............................................................25 Sputa collection and processing ............................................................................25 Human sample autoantibody testing......................................................................26 Statistical analysis..................................................................................................26 III. CL-AMIDINE TREATMENT AMELIORATES CIA ...............................................28 Background and rationale......................................................................................28 Results ...................................................................................................................30 Cl-amidine treatment reduces clinical and histological disease severity in CIA. .................................................................................................30 Cl-amidine treatment reduces serum and synovial citrulline content in CIA. .....................................................................................................31 Cl-amidine treatment does not alter immune cell populations............34 Table I. Frequency of immune cells in Cl-amidine-treated and control mice with CIA. ....................................................................................36 Cl-amidine treatment does not ameliorate CAIA................................36 Treatment with Cl-amidine decreases IgG2a and IgG1 anti-mouse CII antibodies.............................................................................................37 Treatment with Cl-amidine decreases antibody responses to both native and citrullinated synovial epitopes. ..........................................39 Summary and conclusions.....................................................................................43 IV. PAD4 INHIBITION IS SUFFICIENT FOR THE AMELIORATION OF CIA.........48 Background and rationale......................................................................................48 Results ...................................................................................................................49 Treatment with GSK283 decreases clinical disease severity in CIA. .49 vi Treatment with GSK283 decreases histological disease severity in CIA. .....................................................................................................50 Treatment with GSK283 does not significantly alter joint total citrulline levels. ...................................................................................52 Treatment with GSK283 does not significantly alter CII autoantibody production............................................................................................56 Treatment with GSK283 reduces epitope spreading in CIA. ..............60 Summary and conclusions.....................................................................................63 V. INVESTIGATION OF THE MECHANISM OF ACTION FOR ARTHRITIS AMELIORATION BY PAD INHIBITORS .....................................................................66 Background and rationale......................................................................................66 Results ...................................................................................................................69 Cl-amidine treatment does not affect autoantibody-producing cell population numbers. ............................................................................69 Cl-amidine treatment does not
Recommended publications
  • DDAH I (C-19): Sc-26068
    SANTA CRUZ BIOTECHNOLOGY, INC. DDAH I (C-19): sc-26068 The Power to Question BACKGROUND APPLICATIONS DDAH, a dimethylarginine dimethylaminohydrolase, hydrolyzes dimethyl DDAH I (C-19) is recommended for detection of DDAH I of mouse, rat and arginine (ADMA) and monomethyl arginine (MMA), both inhibitors of nitric human origin by Western Blotting (starting dilution 1:200, dilution range oxide synthases, and may be involved in in vivo modulation of nitric oxide 1:100-1:1000) and immunofluorescence (starting dilution 1:50, dilution production. Impairment of DDAH causes ADMA accumulation and a reduc- range 1:50-1:500). tion in cGMP generation. DDAH II, the predominant DDAH isoform in endothelial cells, facilitates the induction of nitric oxide synthesis by all- RECOMMENDED SECONDARY REAGENTS trans-Retinoic acid (atRA). DDAH proteins are highly expressed in colon, kid- To ensure optimal results, the following support (secondary) reagents are ney, stomach and liver tissues. recommended: 1) Western Blotting: use donkey anti-goat IgG-HRP: sc-2020 (dilution range: 1:2000-1:100,000) or Cruz Marker™ compatible donkey anti- REFERENCES goat IgG-HRP: sc-2033 (dilution range: 1:2000-1:5000), Cruz Marker™ 1. Nakagomi, S., et al. 1999. Dimethylarginine dimethylaminohydrolase Molecular Weight Standards: sc-2035, TBS Blotto A Blocking Reagent: (DDAH) as a nerve-injury-associated molecule: mRNA localization in the sc-2333 and Western Blotting Luminol Reagent: sc-2048. 2) Immunofluores- rat brain and its coincident up-regulation with neuronal NO synthase cence: use donkey anti-goat IgG-FITC: sc-2024 (dilution range: 1:100-1:400) (nNOS) in axotomized motoneurons. Eur. J.
    [Show full text]
  • The Effects of the Citrullinating Enzyme, Peptidylarginine Deiminase, on the Activation of T Cells
    The effects of the citrullinating enzyme, peptidylarginine deiminase, on the activation of T cells Rita Barreto Duarte Carilho Torrão Doctor of Philosophy Aston University September, 2016 © Rita Barreto Duarte Carilho Torrão, 2016 Rita Barreto Duarte Carilho Torrão asserts her moral right to be identified as the author of this thesis. This copy of the thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with its author and that no quotation from the report and no information derived from it may be published without proper acknowledgement. 1 Aston University The effects of the citrullinating enzyme, peptidylarginine deiminase, on the activation of T cells Rita Barreto Duarte Carilho Torrão Doctor of Philosophy 2016 Rheumatoid arthritis (RA) and periodontitis (PID) are two chronic inflammatory diseases associated with the modification of self-proteins by citrullinating peptidyl arginine deiminase (PAD) enzymes, leading to a loss of tolerance by the immune system. The main goal of this study was to explore the action of PAD enzyme- mediated citrullination on T cell membrane proteins and gene expression in relation to the T cell phenotype in PID. Effects on cells of the adaptive immune system have been less well studied in PID and the data obtained here shows that citrullination of peripheral blood mononuclear cells (PBMC) by PAD enzymes impairs T cell activation. Microarray studies showed that PAD enzyme treatment led to the dysregulation of genes involved in glucose and amino acid metabolism in PBMC. Real time quantitative polymerase chain reaction (RT-QPCR) in CD4 and CD8 T cells from PID patients showed a trend towards down-regulation of hexokinase 3 and up-regulation of argininosuccinate synthase1.
    [Show full text]
  • Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals
    Journal of the American Heart Association ORIGINAL RESEARCH Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals Joonatan Palmu , MD; Aaro Salosensaari , MSc; Aki S. Havulinna , DSc (Tech); Susan Cheng , MD, MPH; Michael Inouye, PhD; Mohit Jain, MD, PhD; Rodolfo A. Salido , BSc; Karenina Sanders , BSc; Caitriona Brennan, BSc; Gregory C. Humphrey, BSc; Jon G. Sanders , PhD; Erkki Vartiainen , MD, PhD; Tiina Laatikainen , MD, PhD; Pekka Jousilahti, MD, PhD; Veikko Salomaa , MD, PhD; Rob Knight , PhD; Leo Lahti , DSc (Tech); Teemu J. Niiranen , MD, PhD BACKGROUND: Several small-scale animal studies have suggested that gut microbiota and blood pressure (BP) are linked. However, results from human studies remain scarce and conflicting. We wanted to elucidate the multivariable-adjusted as- sociation between gut metagenome and BP in a large, representative, well-phenotyped population sample. We performed a focused analysis to examine the previously reported inverse associations between sodium intake and Lactobacillus abun- dance and between Lactobacillus abundance and BP. METHODS AND RESULTS: We studied a population sample of 6953 Finns aged 25 to 74 years (mean age, 49.2±12.9 years; 54.9% women). The participants underwent a health examination, which included BP measurement, stool collection, and 24-hour urine sampling (N=829). Gut microbiota was analyzed using shallow shotgun metagenome sequencing. In age- and sex-adjusted models, the α (within-sample) and β (between-sample) diversities of taxonomic composition were strongly re- lated to BP indexes (P<0.001 for most). In multivariable-adjusted models, β diversity was only associated with diastolic BP (P=0.032).
    [Show full text]
  • The Intrinsically Disordered Proteins of Myelin in Health and Disease
    cells Review Flexible Players within the Sheaths: The Intrinsically Disordered Proteins of Myelin in Health and Disease Arne Raasakka 1 and Petri Kursula 1,2,* 1 Department of Biomedicine, University of Bergen, Jonas Lies vei 91, NO-5009 Bergen, Norway; [email protected] 2 Faculty of Biochemistry and Molecular Medicine & Biocenter Oulu, University of Oulu, Aapistie 7A, FI-90220 Oulu, Finland * Correspondence: [email protected] Received: 30 January 2020; Accepted: 16 February 2020; Published: 18 February 2020 Abstract: Myelin ensheathes selected axonal segments within the nervous system, resulting primarily in nerve impulse acceleration, as well as mechanical and trophic support for neurons. In the central and peripheral nervous systems, various proteins that contribute to the formation and stability of myelin are present, which also harbor pathophysiological roles in myelin disease. Many myelin proteins have common attributes, including small size, hydrophobic segments, multifunctionality, longevity, and regions of intrinsic disorder. With recent advances in protein biophysical characterization and bioinformatics, it has become evident that intrinsically disordered proteins (IDPs) are abundant in myelin, and their flexible nature enables multifunctionality. Here, we review known myelin IDPs, their conservation, molecular characteristics and functions, and their disease relevance, along with open questions and speculations. We place emphasis on classifying the molecular details of IDPs in myelin, and we correlate these with their various functions, including susceptibility to post-translational modifications, function in protein–protein and protein–membrane interactions, as well as their role as extended entropic chains. We discuss how myelin pathology can relate to IDPs and which molecular factors are potentially involved. Keywords: myelin; intrinsically disordered protein; multiple sclerosis; peripheral neuropathies; myelination; protein folding; protein–membrane interaction; protein–protein interaction 1.
    [Show full text]
  • Citrullination of CXCL8 by Peptidylarginine Deiminase Alters
    ARTICLE Citrullination of CXCL8 by peptidylarginine deiminase alters receptor usage, prevents proteolysis, and dampens tissue infl ammation Paul Proost , 1 Tamara Loos , 1 Anneleen Mortier , 1 Evemie Schutyser , 1 Mieke Gouwy , 1 Samuel Noppen , 1 Chris Dillen , 2 Isabelle Ronsse , 1 Ren é Conings , 1 Sofi e Struyf , 1 Ghislain Opdenakker , 2 Prabhat C. Maudgal , 3 and Jo Van Damme 1 1 Laboratory of Molecular Immunology and 2 Laboratory of Immunobiology, Rega Institute, 3 Laboratory of Ophthalmology, University Hospital, K.U.Leuven, B 3000 Leuven, Belgium Biological functions of proteins are infl uenced by posttranslational modifi cations such as on/off switching by phosphorylation and modulation by glycosylation. Proteolytic processing regulates cytokine and chemokine activities. In this study, we report that natural posttrans- lational citrullination or deimination alters the biological activities of the neutrophil chemoattractant and angiogenic cytokine CXCL8/interleukin-8 (IL-8). Citrullination of arginine in position 5 was discovered on 14% of natural leukocyte-derived CXCL8(1 – 77), generating CXCL8(1 – 77)Cit5 . Peptidylarginine deiminase (PAD) is known to citrullinate structural proteins, and it may initiate autoimmune diseases. PAD effi ciently and site- specifi cally citrullinated CXCL5, CXCL8, CCL17, CCL26, but not IL-1␤ . In comparison with CXCL8(1 – 77), CXCL8(1 – 77)Cit5 had reduced affi nity for glycosaminoglycans and induced less CXCR2-dependent calcium signaling and extracellular signal-regulated kinase 1/2 phosphorylation. In contrast to CXCL8(1– 77), CXCL8(1 – 77)Cit5 was resistant to thrombin- or plasmin-dependent potentiation into CXCL8(6– 77). Upon intraperitoneal injection, CXCL8(6 – 77) was a more potent inducer of neutrophil extravasation compared with CXCL8(1 – 77).
    [Show full text]
  • Links Among Neuronal Nitric Oxide Synthase, Oxidative Stress, and Asymmetric Dimethylarginine (Adma)
    NITRIC OXIDE DEFICIENCY IN CHRONIC KIDNEY DISEASE: LINKS AMONG NEURONAL NITRIC OXIDE SYNTHASE, OXIDATIVE STRESS, AND ASYMMETRIC DIMETHYLARGININE (ADMA) By YOU-LIN TAIN A DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 2007 1 © 2007 You-Lin Tain 2 This dissertation is dedication to my family for their constant love 3 ACKNOWLEDGMENTS This dissertation would not have been possible without the support of many people. Many thanks go to my adviser: Dr. Chris Baylis gave me the chance to work on many projects and also gave me numerous valuable comments for my manuscripts. I would like to thank my committee members for their guidance and valuable comments: Dr. Richard Johnson, Dr. Mohan Raizada, and Dr. Mark Segal. I thanks also go to the Chang Gung Memorial Hospital for awarding me a fellowship, providing me with the financial means to complete this dissertation. I am grateful to many persons who shared their technical assistance and experience, especially Dr. Verlander and Dr. Chang (University of Florida), Dr. Muller and Dr. Szabo (Semmelweis University, Hungary), Dr. Griendling and Dr. Dikalova (Emory University), and Dr. Merchant and Dr. Klein (University of Louisville). Next, I would like to thank all of the members of Dr. Baylis lab, both past and present, with whom I have been fortunate enough to work: Dr. Aaron Erdely, Gerry Freshour, Kevin Engels, Lennie Samsell, Dr. Sarah Knight, Dr. Cheryl Smith, Dr. Jenny Sasser, Harold Snellen, Bruce Cunningham, Gin-Fu Chen, and Natasha Moningka.
    [Show full text]
  • Circuits Regulating Superoxide and Nitric Oxide
    antioxidants Article Circuits Regulating Superoxide and Nitric Oxide Production and Neutralization in Different Cell Types: Expression of Participating Genes and Changes Induced by Ionizing Radiation 1,2, 1,2, 1 1,2, Patryk Bil y, Sylwia Ciesielska y, Roman Jaksik and Joanna Rzeszowska-Wolny * 1 Department of Systems Biology and Engineering, Faculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, 44-100 Gliwice, Poland; [email protected] (P.B.); [email protected] (S.C.); [email protected] (R.J.) 2 Biotechnology Centre, Silesian University of Technology, 44-100 Gliwice, Poland * Correspondence: [email protected] These authors contributed equally. y Received: 30 June 2020; Accepted: 29 July 2020; Published: 3 August 2020 Abstract: Superoxide radicals, together with nitric oxide (NO), determine the oxidative status of cells, which use different pathways to control their levels in response to stressing conditions. Using gene expression data available in the Cancer Cell Line Encyclopedia and microarray results, we compared the expression of genes engaged in pathways controlling reactive oxygen species and NO production, neutralization, and changes in response to the exposure of cells to ionizing radiation (IR) in human cancer cell lines originating from different tissues. The expression of NADPH oxidases and NO synthases that participate in superoxide radical and NO production was low in all cell types. Superoxide dismutase, glutathione peroxidase, thioredoxin, and peroxiredoxins participating in radical neutralization showed high expression in nearly all cell types. Some enzymes that may indirectly influence superoxide radical and NO levels showed tissue-specific expression and differences in response to IR.
    [Show full text]
  • Deimination, Intermediate Filaments and Associated Proteins
    International Journal of Molecular Sciences Review Deimination, Intermediate Filaments and Associated Proteins Julie Briot, Michel Simon and Marie-Claire Méchin * UDEAR, Institut National de la Santé Et de la Recherche Médicale, Université Toulouse III Paul Sabatier, Université Fédérale de Toulouse Midi-Pyrénées, U1056, 31059 Toulouse, France; [email protected] (J.B.); [email protected] (M.S.) * Correspondence: [email protected]; Tel.: +33-5-6115-8425 Received: 27 October 2020; Accepted: 16 November 2020; Published: 19 November 2020 Abstract: Deimination (or citrullination) is a post-translational modification catalyzed by a calcium-dependent enzyme family of five peptidylarginine deiminases (PADs). Deimination is involved in physiological processes (cell differentiation, embryogenesis, innate and adaptive immunity, etc.) and in autoimmune diseases (rheumatoid arthritis, multiple sclerosis and lupus), cancers and neurodegenerative diseases. Intermediate filaments (IF) and associated proteins (IFAP) are major substrates of PADs. Here, we focus on the effects of deimination on the polymerization and solubility properties of IF proteins and on the proteolysis and cross-linking of IFAP, to finally expose some features of interest and some limitations of citrullinomes. Keywords: citrullination; post-translational modification; cytoskeleton; keratin; filaggrin; peptidylarginine deiminase 1. Introduction Intermediate filaments (IF) constitute a unique macromolecular structure with a diameter (10 nm) intermediate between those of actin microfilaments (6 nm) and microtubules (25 nm). In humans, IF are found in all cell types and organize themselves into a complex network. They play an important role in the morphology of a cell (including the nucleus), are essential to its plasticity, its mobility, its adhesion and thus to its function.
    [Show full text]
  • Copyright by Yun Wang 2010
    Copyright by Yun Wang 2010 The Dissertation Committee for Yun Wang Certifies that this is the approved version of the following dissertation: Controlling Nitric Oxide (NO) Overproduction: Nω, Nω- Dimethylarginine Dimethylaminohydrolase (DDAH) as a Novel Drug Target Committee: Walter L. Fast, Supervisor Christian P. Whitman Jon D. Robertus George Georgiou Sean M. Kerwin Controlling Nitric Oxide (NO) Overproduction: Nω, Nω- Dimethylarginine Dimethylaminohydrolase (DDAH) as a Novel Drug Target by Yun Wang, B.S.; M.S. Dissertation Presented to the Faculty of the Graduate School of The University of Texas at Austin in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy The University of Texas at Austin August, 2010 Dedication To all people who have given me generous help when I am in Austin, including professors, colleagues and friends. To my beloved parents in P.R.China, who always motivate me to pursue my dream. Acknowledgements First and foremost, I would like to thank my supervisor, Dr. Walt Fast, for his generous support and for giving me an opportunity to work in his lab four years ago at the University of Texas at Austin. Walt gives me lots of freedom to explore scientific problems and provides a wonderful working environment along with my lovely colleagues. He always gives me useful directions when I meet difficulties. I appreciate every scientific conversation with him. They were especially important to me during the beginning of my Ph.D. study. I wouldn’t have accomplished as much as today without his help. In addition, I’d like to thank colleagues in Fast lab for their generous help during these years.
    [Show full text]
  • Adhesive Properties and Inflammatory Potential of Citrullinated Myelin
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by RERO DOC Digital Library Neurochem Res (2012) 37:1959–1966 DOI 10.1007/s11064-012-0816-z ORIGINAL PAPER Adhesive Properties and Inflammatory Potential of Citrullinated Myelin Basic Protein Peptide 45–89 Lali V. Shanshiashvili • Irina V. Kalandadze • Jeremy J. Ramsden • David G. Mikeladze Received: 12 July 2011 / Revised: 21 May 2012 / Accepted: 26 May 2012 / Published online: 8 June 2012 Ó Springer Science+Business Media, LLC 2012 Abstract Deimination of arginyl residue of myelin basic of the transcription factor NF-kB in these processes. Our protein (MBP) reduces cationicity of MBP and impedes the results suggest that some citrullinated peptides, initially normal myelin membrane assembly. Less ordered structure released from oligodendrocytes, might activate microglia, of MBP is more susceptible to proteolytic attack that may which produces reactive nitrogen species and generates in lead to the release of highly immunogenic deiminated turn fatal feedbacks that kill oligodendrocytes. peptides into extracellular milieu. We have studied the association of peptides 45–89 derived from citrullinated Keywords Myelin basic protein Á Deimination Á MBP (C8 isomer) and phosphorylated MBP (C3 isomer) Citrullinated peptides Á Myelin lipids Á Primary Glial cells Á with the myelin lipids in a model membrane system using Inflammation optical waveguide lightmode spectrometry. The analysis of association/dissociation kinetics to planar lipids under controlled hydrodynamic conditions has shown that MBP Introduction 45–89 peptide from citrullinated C8 isomer is less effec- tively adsorbed on the lipid membrane, than peptide from Activated microglia is significant component of the brain phosphorylated C3 isomer and packing densities for pathology during the chronic neuroinflammatory diseases.
    [Show full text]
  • (10) Patent No.: US 8119385 B2
    US008119385B2 (12) United States Patent (10) Patent No.: US 8,119,385 B2 Mathur et al. (45) Date of Patent: Feb. 21, 2012 (54) NUCLEICACIDS AND PROTEINS AND (52) U.S. Cl. ........................................ 435/212:530/350 METHODS FOR MAKING AND USING THEMI (58) Field of Classification Search ........................ None (75) Inventors: Eric J. Mathur, San Diego, CA (US); See application file for complete search history. Cathy Chang, San Diego, CA (US) (56) References Cited (73) Assignee: BP Corporation North America Inc., Houston, TX (US) OTHER PUBLICATIONS c Mount, Bioinformatics, Cold Spring Harbor Press, Cold Spring Har (*) Notice: Subject to any disclaimer, the term of this bor New York, 2001, pp. 382-393.* patent is extended or adjusted under 35 Spencer et al., “Whole-Genome Sequence Variation among Multiple U.S.C. 154(b) by 689 days. Isolates of Pseudomonas aeruginosa” J. Bacteriol. (2003) 185: 1316 1325. (21) Appl. No.: 11/817,403 Database Sequence GenBank Accession No. BZ569932 Dec. 17. 1-1. 2002. (22) PCT Fled: Mar. 3, 2006 Omiecinski et al., “Epoxide Hydrolase-Polymorphism and role in (86). PCT No.: PCT/US2OO6/OOT642 toxicology” Toxicol. Lett. (2000) 1.12: 365-370. S371 (c)(1), * cited by examiner (2), (4) Date: May 7, 2008 Primary Examiner — James Martinell (87) PCT Pub. No.: WO2006/096527 (74) Attorney, Agent, or Firm — Kalim S. Fuzail PCT Pub. Date: Sep. 14, 2006 (57) ABSTRACT (65) Prior Publication Data The invention provides polypeptides, including enzymes, structural proteins and binding proteins, polynucleotides US 201O/OO11456A1 Jan. 14, 2010 encoding these polypeptides, and methods of making and using these polynucleotides and polypeptides.
    [Show full text]
  • The Microbiota-Produced N-Formyl Peptide Fmlf Promotes Obesity-Induced Glucose
    Page 1 of 230 Diabetes Title: The microbiota-produced N-formyl peptide fMLF promotes obesity-induced glucose intolerance Joshua Wollam1, Matthew Riopel1, Yong-Jiang Xu1,2, Andrew M. F. Johnson1, Jachelle M. Ofrecio1, Wei Ying1, Dalila El Ouarrat1, Luisa S. Chan3, Andrew W. Han3, Nadir A. Mahmood3, Caitlin N. Ryan3, Yun Sok Lee1, Jeramie D. Watrous1,2, Mahendra D. Chordia4, Dongfeng Pan4, Mohit Jain1,2, Jerrold M. Olefsky1 * Affiliations: 1 Division of Endocrinology & Metabolism, Department of Medicine, University of California, San Diego, La Jolla, California, USA. 2 Department of Pharmacology, University of California, San Diego, La Jolla, California, USA. 3 Second Genome, Inc., South San Francisco, California, USA. 4 Department of Radiology and Medical Imaging, University of Virginia, Charlottesville, VA, USA. * Correspondence to: 858-534-2230, [email protected] Word Count: 4749 Figures: 6 Supplemental Figures: 11 Supplemental Tables: 5 1 Diabetes Publish Ahead of Print, published online April 22, 2019 Diabetes Page 2 of 230 ABSTRACT The composition of the gastrointestinal (GI) microbiota and associated metabolites changes dramatically with diet and the development of obesity. Although many correlations have been described, specific mechanistic links between these changes and glucose homeostasis remain to be defined. Here we show that blood and intestinal levels of the microbiota-produced N-formyl peptide, formyl-methionyl-leucyl-phenylalanine (fMLF), are elevated in high fat diet (HFD)- induced obese mice. Genetic or pharmacological inhibition of the N-formyl peptide receptor Fpr1 leads to increased insulin levels and improved glucose tolerance, dependent upon glucagon- like peptide-1 (GLP-1). Obese Fpr1-knockout (Fpr1-KO) mice also display an altered microbiome, exemplifying the dynamic relationship between host metabolism and microbiota.
    [Show full text]