In Mammalian Oocyte and Ovarian Follicle Development
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The function of gametocyte specific factor 1 (GTSF1) in mammalian oocyte and ovarian follicle development By Georgios Liperis Submitted in accordance with the requirements for the degree of Doctor of Philosophy The University of Leeds School of Medicine August, 2013 I confirm that the work submitted is my own and that appropriate credit has been given where reference has been made to the work of others This copy has been supplied on the understanding that it is copyright material and that no quotation from this thesis may be published without proper acknowledgement II ACKNOWLEDGEMENTS I would like to express my special appreciation to Professor Helen Picton for giving me the opportunity to work on such an enthusiastic project and for all the help and support she has provided me over the last 4 years. You have been a tremendous mentor for me. I would like to thank you for all the support and encouragement and for allowing me to grow as a research scientist and as a person. The good advice, support and friendship of my second supervisor, Dr. John Huntriss, has been invaluable and for that I am extremely grateful. This work couldn’t have been completed without the help from several people. Special thanks to Matt Cotterill and Jian-Ping Liu whose help has been invaluable. Also many thanks to the bioinformatics team, David Illes, Lee Hazelwood and Praveen Baskaran. Over the course of the past 4 years, I have been surrounded by many people that have all contributed to the completion of this study and with some of which I have become close friends. So thank you to; David Miller, Jan Hogg, Ping Jin, Matt Hinkins, Karen Hemmings, Emma Chambers, Carl Ambrose, Esther Collado Fernandez, Lorna Blackwell, Abdul Hakim Shaban Elnfati, Stefanie Nadj, Adel Binduraihem, Gisela Lorente and Forough Torabi Baghkomeh. Last, but by no means least, a huge thank you to my family who have provided constant support and encouragement. Words cannot express how grateful I am to you for all the sacrifices you have made on my behalf. This work has been funded by MRC-DTA “Στους γονείς οφείλομεν το ζην, στους δε διδασκάλους το ευ ζην” (To our parents we owe life, to our teachers a good life) Alexander the Great III ABSTRACT A detailed understanding of the genes and mechanisms that regulate oocyte growth and maturation underpins the development of improved methods of assisted conception. Gametocyte specific factor 1 (GTSF1)-a putative marker of gamete developmental competence, is highly conserved across species but in mammals demonstrates a sexual dimorphism in its function. In mice, male mutants for Gtsf1 have an infertile phenotype, whereas female mutants appear to have normal ovarian function. It is hypothesised that GTSF1 regulates oocyte development in monovular species such as the sheep. Initial studies characterised the expression and cellular distribution of GTSF1 across cDNA libraries spanning ovine oogenesis and embryogenesis and by using in situ hybridisation of fixed tissue. GTSF1 expression was confined to gonadal and embryonic tissues with highest expression in the ooplasm of germinal vesicle (GV)-staged secondary oocytes. The gene sequence of GTSF1 was obtained and the gene and predicted protein sequences revealed close homology across many species with two conserved CHHC zinc finger domains known to bind RNA. Functional analysis of the role of GTSF1 during sheep oocyte maturation was conducted using short interference RNA (siRNA injection) in conjunction with oocyte in vitro maturation (IVM) and oocytectomised cumulus shell co-culture. This system was validated using siRNA knockdown (kd) for a known oocyte-specific gene, Growth differentiation factor 9 (GDF9). The effect on GTSF1 kd was evaluated following the microinjection of 770 GV oocytes with siRNA target against the sixth exon of ovine GTSF1. The effects of GTSF1 kd were evaluated in 57 MII oocytes and cumulus shells. Targeted kd of GTSF1 in GV oocytes followed by IVM and cumulus shell co-culture did not affect oocyte meiotic progression or cumulus expansion. Microarray analysis using the bovine GeneChip Affymetrix array revealed that 6 down-regulated genes (TCOF1, RPS8, CACNA1D, SREK1IP1, TIMP1, MYL9) following the GTSF1 kd were associated with developmental competence, RNA storage, post-transcriptional modifications and translation. Immunofluorescent studies localized GTSF1 protein to the P-body in GV ovine oocytes. Collectively these results suggest a possible role of GTSF1 in post-transcriptional control of RNA processing, translational regulation and RNA storage which may impact on oocyte developmental competence. IV List of Contents Acknowledgments II Abstract III List of contents IV List of tables VIII List of figures IX List of abbreviations XI Chapter 1: General Introduction 1 1.1 Introduction 1 1.2 Oocyte and follicle development 2 1.2.1 Origin of germ cells 2 1.2.2 Folliculogenesis 4 1.2.3 Primordial follicle development 6 1.2.4 Preantral follicle development 10 1.2.5 Antral follicle development 11 1.2.6 Preovulatory follicle development 16 1.2.7 Peri-ovulatory follicle development and oocyte control of granulosa and cumulus cell function 19 1.3 Oocyte growth and maturation 22 1.3.1 Nuclear maturation of oocytes 24 1.3.2 Cytoplasmic maturation of oocytes 27 1.4 The role of GTSF1 in the regulation of gametogenesis 33 1.4.1 The function of GTSF1 37 1.4.2 RNA-binding 38 1.5 Evaluation of novel gene function 42 1.5.1 The role of small RNA pathways in reproduction 43 1.5.2 RNAi as means to moderate oocyte gene function 46 1.6 Aims and objectives 51 Chapter 2: Materials and methods 53 2.1 Ovine tissue collection and IVM 53 2.1.1 Tissue preparation 53 2.1.2 Aspiration of cumulus oocyte complexes 54 2.1.3 In vitro maturation of COCs 55 2.1.4 Isolation of ovine follicles 55 2.2 General molecular methods 57 2.2.1 Library construction 57 2.2.2 Isolation of mRNA 57 2.2.3 Synthesis of cDNA 58 2.2.4 Long distance PCR of total cDNA 58 2.2.5 Verification PCR 59 2.2.6 Agarose gel electrophoresis 60 2.3 Cloning and sequencing 61 2.3.1 Gel extraction 61 2.3.2 Addition of poly-(A) tail 62 2.3.3 Cloning into pGEM-Teasy 62 2.3.4 Transformation into E. coli 63 2.3.5 Plasmid purification 64 2.3.6 Sequence analysis 64 2.4 Real-time PCR analysis 65 2.5 Western blotting 68 2.5.1 Tissue preparation 68 V 2.5.2 Sodium Dodecyl Sulfate-Polyacrylamide gel electrophoresis 69 2.5.3 Protein transfer 71 2.5.4 Blocking and detection 72 2.6 General histology methods 73 2.6.1 Fluorescence in situ hybridisation 73 2.6.2 Tissue collection and processing 74 2.6.3 Tissue embedding 74 2.6.4 Template preparation 75 2.6.5 Synthesis and labelling of amine-modified RNA 76 2.6.6 FISH protocol 78 2.7 Statistical analysis 80 Chapter 3: Characterisation of ovine GTSF1 81 3.1 Introduction 81 3.1.1 Aims 83 3.2 Materials and Methods 84 3.2.1 Follicle, oocyte, embryo and ovarian somatic cell isolations 84 3.2.2 Somatic tissue cell isolations 85 3.2.3 Molecular evaluation of the ovine developmental series 86 3.2.4 Cloning and sequencing ovine GTSF1 86 3.2.4.1 Nested PCR 86 3.2.4.2 Degenerate primer PCR 89 3.2.5 Characterisation of the cellular localisation of GTSF1 expression across ovine gametogenesis 90 3.2.6 Western blotting 91 3.3 Results 91 3.3.1 Verification of cDNA libraries 91 3.3.2 Expression analysis of GTSF1 across ovine oocyte and embryo development 92 3.3.3 Expression of GTSF1 in somatic tissue 93 3.3.4 Cellular localisation of GTSF1 expression in the ovine ovary and testis 94 3.3.5 Analysis of the GTSF1 ovine sequence 95 3.3.6 Expression of GTSF1 protein in the ovine ovary 100 3.4 Discussion 101 3.4.1 Conclusion 107 Chapter 4: Validation of targeted gene knockdown during the IVM of ovine oocytes by the microinjection of siRNA species 108 4.1 Introduction 108 4.1.1 Aims 112 4.2 Materials and methods 113 4.2.1 Experiment 1: Pilot evaluations of microinjection methodology 113 4.2.2 Experiment 2: Optimisation of GDF9 knockdown using siRNA and IVM of ovine oocytes 116 Day 1: siRNA microinjection and culture of oocytes 116 Day 2: Oocytectomy of COCs and IVM co-culture with gene knockdown oocytes 119 Day 3: Developmental assessments 121 4.2.2.1 Molecular evaluation of GDF9 knockdown 122 4.2.3 Experiment 3: Assessment of the impact of GDF9 knockdown on ovine oocyte maturation and cumulus expansion in vitro 122 4.2.4 Experiment 4: Assessment of the effect of gonadotrophins on maturation and cumulus expansion following GDF9 knockdown in ovine oocytes 124 4.2.5 Statistical analysis 125 4.3 Results 125 4.3.1 Experiment 1: Pilot evaluations of microinjection methodology 125 4.3.2 Experiment 2: Optimisation of GDF9 knockdown using siRNA and IVM of ovine oocytes 127 VI 4.3.3 Experiment 3: Assessment of the impact of GDF9 knockdown on ovine oocyte maturation and cumulus expansion in vitro 132 4.3.3.1 Oocyte survival after microinjection 132 4.3.3.2 The impact of oocyte GDF9 knockdown on meiotic progression in vitro 133 4.3.3.3 The effect of oocyte GDF9 knockdown on cumulus mass and expansion in vitro 133 4.3.4 Molecular analysis of gene expression following GDF9 knockdown 135 4.3.4 Experiment 4: Assessment of the effect of gonadotrophins on maturation and cumulus expansion of GDF9 knockdown on ovine oocytes 138 4.4 Discussion 140 4.4.1 The impact of GDF9 knockdown on oocyte meiotic progression and cumulus cell expansion in vitro 141 4.4.2 The impact of GDF9 on gene expression 143 4.4.3 The effect of gonadotrophins on maturation and cumulus expansion of GDF9 knockdown on ovine oocytes 148 4.4.4 Optimisation of microinjection and