Evolution of Variation and Variability Under Fluctuating, Stabilizing, and Disruptive Selection
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Evolution of Amphimixis and Recombination Under Fluctuating Selection in One and Many Traits
Genet. Res., Camb. (1996), 68, pp. 165-173 With 7 text-figures Copyright © 1996 Cambridge University Press 165 Evolution of amphimixis and recombination under fluctuating selection in one and many traits ALEXEY S. KONDRASHOV* AND LEV YU. YAMPOLSKY Section of Ecology and Systematics, Cornell University, Ithaca, NY 14853, USA (Received 6 June 1995 and in revised form 14 May 1996) Summary Both stabilizing and directional selection acting on one or many quantitative traits usually reduce the genetic variance in a polymorphic population. Amphimixis and recombination restore the variance, pushing it closer to its value under linkage equilibrium. They thus increase the response of the population to fluctuating selection and decrease the genetic load when the mean phenotype is far from optimum. Amphimixis can have a short-term advantage over apomixis if selection fluctuates frequently and widely, so that every genotype often has a low fitness. Such selection causes high genetic variance due to frequent allele substitutions, and a high load even with amphimixis. Recombination in an amphimictic population is maintained only if selection is usually strong and effectively directional. A modifier allele causing free recombination can have a significant advantage only if fluctuations of selection are such that the load is substantial. With smaller fluctuations, an intermediate recombination rate can be established, either due to fixation of alleles that cause such a rate or due to the stable coexistence of alleles causing high and low recombination. If many traits simultaneously are under fluctuating selection, amphimixis and recombination can be maintained when selection associated with individual traits is weaker and the changes in their mean values are smaller than with a single trait. -
Adaptation from Standing Genetic Variation and from Mutation
Adaptation from standing genetic variation and from mutation Experimental evolution of populations of Caenorhabditis elegans Sara Carvalho Dissertation presented to obtain the Ph.D degree in Biology Instituto de Tecnologia Química e Biológica | Universidade Nova de Lisboa Oeiras, Janeiro, 2012 Adaptation from standing genetic variation and from mutation Experimental evolution of populations of Caenorhabditis elegans Sara Carvalho Dissertation presented to obtain the Ph.D degree in Evolutionary Biology Instituto de Tecnologia Química e Biológica | Universidade Nova de Lisboa Research work coordinated by: Oeiras, Janeiro, 2012 To all the people I love. Table of contents List of Figures 3 List of Tables 5 Acknowledgements 7 Abstract 9 Resumo 13 CHAPTER 1 – Introduction 17 1.1 And yet…it changes 18 1.1.2 Evolution and adaptation 19 1.1.3 Mutation and standing genetic variation 25 Mutation 26 Standing genetic variation 32 Mutation versus standing genetic variation 34 Genetic recombination among adaptive alleles 35 1.1.4 Other players in evolution 37 1.1.5 Evolution in the wild and in the lab 40 1.1.6 Objectives 43 1.2 Caenorhabditis elegans as a model for experimental evolution 45 1.2.1 Experimental populations of C. elegans 50 1.3 References 53 CHAPTER 2 – Adaptation from high levels of standing genetic 63 variation under different mating systems 2.1 Summary 64 2.2 Introduction 64 2.3 Materials and Methods 69 2.4 Results 84 2.5 Discussion 98 2.6 Acknowledgements 103 2.7 References 103 2.8 Supplementary information 110 1 CHAPTER 3 – Evolution -
And Ford, I; Ford, '953) on the Other Hand Have Put Forward a View Intermediate Between the Extreme Ones of Darwin on the One Hand and Goldschmidt on the Other
THE EVOLUTION OF MIMICRY IN THE BUTTERFLY PAPILIO DARDANUS C. A. CLARKE and P. M. SHEPPARD Departments of Medicine and Zoology, University of Liverpool Received23.V.59 1.INTRODUCTION WHENBatesputforward the mimicry hypothesis which bears his name, Darwin (1872), although accepting it, had some difficulty in explaining the evolution of the mimetic resemblance of several distinct species to one distasteful model by a series of small changes, a require- ment of his general theory of evolution. He said "it is necessary to suppose in some cases that ancient members belonging to several distinct groups, before they had diverged to their present extent, accidentally resembled a member of another and protected group in a sufficient degree to afford some slight protection; this having given the basis for the subsequent acquisition of the most perfect resemb- lance ". Punnett (1915) realised that the difficulty is even more acute when one is dealing with a polymorphic species whose forms mimic very distantly related models. Knowing that, in those butterflies which had been investigated genetically, the forms differed by single allelomorphs he concluded that the mimicry did not evolve gradually and did not confer any advantage or disadvantage to the individual. He argued that an allelomorph arises at a single step by mutation and that therefore the mimicry also arises by chance at a single step. Goldschmidt (x) although not denying that mimicry confers some advantage to its possessors also maintained that the resemblance arises fully perfected by a single mutation of a gene distinct from that producing the colour pattern in the model, but producing a similar effect in the mimic. -
Negative Frequency-Dependent Selection Is Frequently Confounding
PERSPECTIVE published: 21 February 2018 doi: 10.3389/fevo.2018.00010 Negative Frequency-Dependent Selection Is Frequently Confounding Dustin Brisson* Biology Department, University of Pennsylvania, Philadelphia, PA, United States Persistent genetic variation within populations presents an evolutionary problem, as natural selection and genetic drift tend to erode genetic diversity. Models of balancing selection were developed to account for the maintenance of genetic variation observed in natural populations. Negative frequency-dependent selection is a powerful type of balancing selection that maintains many natural polymorphisms, but it is also commonly misinterpreted. This review aims to clarify the processes underlying negative frequency-dependent selection, describe classes of polymorphisms that can and cannot result from these processes, and discuss the empirical data needed to accurately identify processes that generate or maintain diversity in nature. Finally, the importance of accurately describing the processes affecting genetic diversity within populations as it relates to research progress is considered. Keywords: negative frequency dependent selection, balancing selection, killing the winner hypothesis, multiple niche polymorphism, density dependent selection Edited by: Norman A. Johnson, University of Massachusetts Amherst, United States INTRODUCTION Reviewed by: Natural diversity—the “endless forms most beautiful and most wonderful” (Darwin, 2012)— Rama Shankar Singh, Is an enduring focus of both evolutionary biologists and -
Host–Parasite Fluctuating Selection in the Absence of Specificity
Heriot-Watt University Research Gateway Host–parasite fluctuating selection in the absence of specificity Citation for published version: Best, A, Ashby, B, White, A, Bowers, R, Buckling, A, Koskella, B & Boots, M 2017, 'Host–parasite fluctuating selection in the absence of specificity', Proceedings of the Royal Society B: Biological Sciences, vol. 284, no. 1866, 20171615. https://doi.org/10.1098/rspb.2017.1615 Digital Object Identifier (DOI): 10.1098/rspb.2017.1615 Link: Link to publication record in Heriot-Watt Research Portal Document Version: Publisher's PDF, also known as Version of record Published In: Proceedings of the Royal Society B: Biological Sciences General rights Copyright for the publications made accessible via Heriot-Watt Research Portal is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy Heriot-Watt University has made every reasonable effort to ensure that the content in Heriot-Watt Research Portal complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Download date: 25. Sep. 2021 Downloaded from http://rspb.royalsocietypublishing.org/ on March 5, 2018 Host–parasite fluctuating selection in the rspb.royalsocietypublishing.org absence of specificity Alex Best1, Ben Ashby2,3, Andy White4, Roger Bowers5, Angus Buckling6, Britt Koskella3 and Mike Boots3,6 Research 1School of Mathematics and Statistics, University of Sheffield, Sheffield S3 7RH, UK 2Department of Mathematical Sciences, University of Bath, Claverton Down, Bath BA2 7AY, UK Cite this article: Best A, Ashby B, White A, 3Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA 4 Bowers R, Buckling A, Koskella B, Boots M. -
Recent Selection Changes in Human Genes Under Long-Term Balancing Selection Cesare De Filippo,*,1 Felix M
MBE Advance Access published March 10, 2016 Recent Selection Changes in Human Genes under Long-Term Balancing Selection Cesare de Filippo,*,1 Felix M. Key,1 Silvia Ghirotto,2 Andrea Benazzo,2 Juan R. Meneu,1 Antje Weihmann,1 NISC Comparative Sequence Program,3 Genı´s Parra,1 Eric D. Green,3 and Aida M. Andre´s*,1 1Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany 2Department of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy 3National Human Genome Research Institute, National Institutes of Health, Bethesda, MD *Corresponding author: E-mail: cesare_fi[email protected]; [email protected]. Associate editor: Ryan Hernandez Abstract Balancing selection is an important evolutionary force that maintains genetic and phenotypic diversity in populations. Most studies in humans have focused on long-standing balancing selection, which persists over long periods of time and is generally shared across populations. But balanced polymorphisms can also promote fast adaptation, especially when the Downloaded from environment changes. To better understand the role of previously balanced alleles in novel adaptations, we analyzed in detail four loci as case examples of this mechanism. These loci show hallmark signatures of long-term balancing selection in African populations, but not in Eurasian populations. The disparity between populations is due to changes in allele frequencies, with intermediate frequency alleles in Africans (likely due to balancing selection) segregating instead at low- or high-derived allele frequency in Eurasia. We explicitly tested the support for different evolutionary models with an http://mbe.oxfordjournals.org/ approximate Bayesian computation approach and show that the patterns in PKDREJ, SDR39U1,andZNF473 are best explained by recent changes in selective pressure in certain populations. -
Microevolution and the Genetics of Populations Microevolution Refers to Varieties Within a Given Type
Chapter 8: Evolution Lesson 8.3: Microevolution and the Genetics of Populations Microevolution refers to varieties within a given type. Change happens within a group, but the descendant is clearly of the same type as the ancestor. This might better be called variation, or adaptation, but the changes are "horizontal" in effect, not "vertical." Such changes might be accomplished by "natural selection," in which a trait within the present variety is selected as the best for a given set of conditions, or accomplished by "artificial selection," such as when dog breeders produce a new breed of dog. Lesson Objectives ● Distinguish what is microevolution and how it affects changes in populations. ● Define gene pool, and explain how to calculate allele frequencies. ● State the Hardy-Weinberg theorem ● Identify the five forces of evolution. Vocabulary ● adaptive radiation ● gene pool ● migration ● allele frequency ● genetic drift ● mutation ● artificial selection ● Hardy-Weinberg theorem ● natural selection ● directional selection ● macroevolution ● population genetics ● disruptive selection ● microevolution ● stabilizing selection ● gene flow Introduction Darwin knew that heritable variations are needed for evolution to occur. However, he knew nothing about Mendel’s laws of genetics. Mendel’s laws were rediscovered in the early 1900s. Only then could scientists fully understand the process of evolution. Microevolution is how individual traits within a population change over time. In order for a population to change, some things must be assumed to be true. In other words, there must be some sort of process happening that causes microevolution. The five ways alleles within a population change over time are natural selection, migration (gene flow), mating, mutations, or genetic drift. -
Genetic Variation in Polyploid Forage Grass: Assessing the Molecular Genetic Variability in the Paspalum Genus Cidade Et Al
Genetic variation in polyploid forage grass: Assessing the molecular genetic variability in the Paspalum genus Cidade et al. Cidade et al. BMC Genetics 2013, 14:50 http://www.biomedcentral.com/1471-2156/14/50 Cidade et al. BMC Genetics 2013, 14:50 http://www.biomedcentral.com/1471-2156/14/50 RESEARCH ARTICLE Open Access Genetic variation in polyploid forage grass: Assessing the molecular genetic variability in the Paspalum genus Fernanda W Cidade1, Bianca BZ Vigna2, Francisco HD de Souza2, José Francisco M Valls3, Miguel Dall’Agnol4, Maria I Zucchi5, Tatiana T de Souza-Chies6 and Anete P Souza1,7* Abstract Background: Paspalum (Poaceae) is an important genus of the tribe Paniceae, which includes several species of economic importance for foraging, turf and ornamental purposes, and has a complex taxonomical classification. Because of the widespread interest in several species of this genus, many accessions have been conserved in germplasm banks and distributed throughout various countries around the world, mainly for the purposes of cultivar development and cytogenetic studies. Correct identification of germplasms and quantification of their variability are necessary for the proper development of conservation and breeding programs. Evaluation of microsatellite markers in different species of Paspalum conserved in a germplasm bank allowed assessment of the genetic differences among them and assisted in their proper botanical classification. Results: Seventeen new polymorphic microsatellites were developed for Paspalum atratum Swallen and Paspalum notatum Flüggé, twelve of which were transferred to 35 Paspalum species and used to evaluate their variability. Variable degrees of polymorphism were observed within the species. Based on distance-based methods and a Bayesian clustering approach, the accessions were divided into three main species groups, two of which corresponded to the previously described Plicatula and Notata Paspalum groups. -
Multi-Mode Fluctuating Selection in Host-Parasite Coevolution
ORE Open Research Exeter TITLE Multi-mode fluctuating selection in host-parasite coevolution. AUTHORS Ashby, B; Boots, M JOURNAL Ecology Letters DEPOSITED IN ORE 15 February 2017 This version available at http://hdl.handle.net/10871/25858 COPYRIGHT AND REUSE Open Research Exeter makes this work available in accordance with publisher policies. A NOTE ON VERSIONS The version presented here may differ from the published version. If citing, you are advised to consult the published version for pagination, volume/issue and date of publication Multi-mode fluctuating selection in host-parasite coevolution Ben Ashbya,b* and Mike Bootsb,c a. Department of Mathematical Sciences, University of Bath, Bath BA2 7AY, UK b. Integrative Biology, University of California Berkeley, Berkeley, CA, USA c. Biosciences, College of Life and Environmental Sciences, University of Exeter, Penryn TR10 9EZ, UK *Corresponding author: [email protected] Statement of Authorship: BA & MB conceived the study and wrote the manuscript. BA analysed the theoretical model. This is the peer reviewed version of the following article: Ashby, B. and Boots, M. 2017 Multi-mode fluctuating selection in host-parasite coevolution. Ecol. Lett., which has been published in final form at http://onlinelibrary.wiley.com/wol1/doi/10.1111/ele.12734/abstract. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self- Archiving. Ashby, B. and Boots, M. 2017 Multi-mode fluctuating selection in host-parasite coevolution. Ecol. Lett. Understanding fluctuating selection is important for our understanding of patterns of spatial and temporal diversity in nature. Host-parasite theory has classically assumed fluctuations either occur between highly specific genotypes (Matching Alleles: MA) or from specialism to generalism (Gene- for-Gene: GFG). -
Patterns and Power of Phenotypic Selection in Nature
Articles Patterns and Power of Phenotypic Selection in Nature JOEL G. KINGSOLVER AND DAVID W. PFENNIG Phenotypic selection occurs when individuals with certain characteristics produce more surviving offspring than individuals with other characteristics. Although selection is regarded as the chief engine of evolutionary change, scientists have only recently begun to measure its action in the wild. These studies raise numerous questions: How strong is selection, and do different types of traits experience different patterns of selection? Is selection on traits that affect mating success as strong as selection on traits that affect survival? Does selection tend to favor larger body size, and, if so, what are its consequences? We explore these questions and discuss the pitfalls and future prospects of measuring selection in natural populations. Keywords: adaptive landscape, Cope’s rule, natural selection, rapid evolution, sexual selection henotypic selection occurs when individuals with selection on traits that affect survival stronger than on those Pdifferent characteristics (i.e., different phenotypes) that affect only mating success? In this article, we explore these differ in their survival, fecundity, or mating success. The idea and other questions about the patterns and power of phe- of phenotypic selection traces back to Darwin and Wallace notypic selection in nature. (1858), and selection is widely accepted as the primary cause of adaptive evolution within natural populations.Yet Darwin What is selection, and how does it work? never attempted to measure selection in nature, and in the Selection is the nonrandom differential survival or repro- century following the publication of On the Origin of Species duction of phenotypically different individuals. -
Arise by Chance As the Result of Mutation. They Therefore Suggest
THE EVOLUTION OF DOMINANCE UNDER DISRUPTIVE SELECTION C. A. CLARKE and P. Ni. SHEPPARD Department of Medicine and Department of Zoology, University of Liverpool Received6.iii.59 1.INTRODUCTION INa paper on the effects of disruptive selection, Mather (1955) pointed out that if there are two optimum values for a character and all others are less advantageous or disadvantageous there will be disruptive selection which can lead to the evolution of a polymorphism. Sheppard (1958) argued that where such selection is effective and the change from one optimum value to the other is switched by a single pair of allelomorphs there will be three genotypes but only two advantageous phenotypes. Consequently if dominance were absent initially it would be evolved as a result of the disruptive selection, the heterozygote and one of the homozygotes both coming to resemble one of the two optimum phenotypes (see Ford, 1955, on Tripharna comes). Thoday (1959) has shown by means of an artificial selection experiment that, even when a character is, at the beginning, controlled polygenically (sternopleural chaeta-number in Drosophila) and there is 50 per cent. gene exchange between the "high" and "low" selected sub-popu- lations, a polymorphism can evolve. The most fully understood examples of disruptive selection (other than sex) are provided by instances of Batesian Mimicry, where there are a number of distinct warningly coloured species, acting as models, which are mimicked by the polymorphic forms of a single more edible species. Fisher and Ford (see Ford, 1953) have argued that a suffi- ciently good resemblance between mimic and model is not likely to arise by chance as the result of mutation. -
Worldwide Genetic Variation in Dopamine and Serotonin Pathway
American Journal of Medical Genetics Part B (Neuropsychiatric Genetics) 147B:1070–1075 (2008) Worldwide Genetic Variation in Dopamine and Serotonin Pathway Genes: Implications for Association Studies Michelle Gardner,1,2 Jaume Bertranpetit,1,2 and David Comas1,2* 1Unitat de Biologia Evolutiva, Universitat Pompeu Fabra, Doctor Aiguader, Barcelona, Spain 2CIBER Epidemiologı´a y Salud Pu´blica (CIBERESP), Barcelona, Spain The dopamine and serotonin systems are two of the most important neurotransmitter pathways in Please cite this article as follows: Gardner M, Bertran- the human nervous system and their roles in petit J, Comas D. 2008. Worldwide Genetic Variation controlling behavior and mental status are well in Dopamine and Serotonin Pathway Genes: Implica- accepted. Genes from both systems have been tions for Association Studies. Am J Med Genet widely implicated in psychiatric and behavioral Part B 147B:1070–1075. disorders, with numerous reports of associations and almost equally as numerous reports of the failure to replicate a previous finding of associa- tion. We investigate a set of 21 dopamine and serotonin genes commonly tested for association INTRODUCTION with psychiatric disease in a set of 39 worldwide The dopamine and serotonin systems are two of the major populations representing global genetic diversity neurotransmitter systems in humans. Dopamine affects brain to see whether the failure to replicate findings of processes that control both motor and emotional behavior and association may be explained by population based it is known to have a role in the brain’s reward mechanism differences in allele frequencies and linkage [Schultz, 2002]. Serotonin has a critical role in temperature disequilibrium (LD) in this gene set.