Genetic Diversity of Marine Gastropods: Contrasting Strategies of Cerithium Rupestre and C
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Adaptation from Standing Genetic Variation and from Mutation
Adaptation from standing genetic variation and from mutation Experimental evolution of populations of Caenorhabditis elegans Sara Carvalho Dissertation presented to obtain the Ph.D degree in Biology Instituto de Tecnologia Química e Biológica | Universidade Nova de Lisboa Oeiras, Janeiro, 2012 Adaptation from standing genetic variation and from mutation Experimental evolution of populations of Caenorhabditis elegans Sara Carvalho Dissertation presented to obtain the Ph.D degree in Evolutionary Biology Instituto de Tecnologia Química e Biológica | Universidade Nova de Lisboa Research work coordinated by: Oeiras, Janeiro, 2012 To all the people I love. Table of contents List of Figures 3 List of Tables 5 Acknowledgements 7 Abstract 9 Resumo 13 CHAPTER 1 – Introduction 17 1.1 And yet…it changes 18 1.1.2 Evolution and adaptation 19 1.1.3 Mutation and standing genetic variation 25 Mutation 26 Standing genetic variation 32 Mutation versus standing genetic variation 34 Genetic recombination among adaptive alleles 35 1.1.4 Other players in evolution 37 1.1.5 Evolution in the wild and in the lab 40 1.1.6 Objectives 43 1.2 Caenorhabditis elegans as a model for experimental evolution 45 1.2.1 Experimental populations of C. elegans 50 1.3 References 53 CHAPTER 2 – Adaptation from high levels of standing genetic 63 variation under different mating systems 2.1 Summary 64 2.2 Introduction 64 2.3 Materials and Methods 69 2.4 Results 84 2.5 Discussion 98 2.6 Acknowledgements 103 2.7 References 103 2.8 Supplementary information 110 1 CHAPTER 3 – Evolution -
(IAS) Policy Options to Minimise the Negative Impacts of Invasive
TECHNICAL SUPPORT TO EU STRATEGY ON INVASIVE ALIEN SPECIES (IAS) Policy options to minimise the negative impacts of invasive alien species on biodiversity in Europe and the EU Service Contract No 070307/2007/483544/MAR/B2 Clare Shine (IEEP) Marianne Kettunen (IEEP) Piero Genovesi (ISPRA) Stephan Gollasch (Go-Consult) Shyama Pagad (ISSG) Uwe Starfinger (Institut für Ökologie, Technical University of Berlin, Germany) December 2008 Citation and disclaimer This report should be quoted as follows: Shine, C., Kettunen, M., Genovesi, P., Gollasch, S., Pagad, S. & Starfinger, U. 2008. Technical support to EU strategy on invasive species (IAS) – Policy options to control the negative impacts of IAS on biodiversity in Europe and the EU (Final module report for the European Commission). Institute for European Environmental Policy (IEEP), Brussels, Belgium. 104 pp. + Annexes. Related studies include: Shine, C., Kettunen, M., ten Brink, P., Genovesi, P. & Gollasch, S. 2009. Technical support to EU strategy on invasive species (IAS) – Recommendations on policy options to control the negative impacts of IAS on biodiversity in Europe and the EU. Final report for the European Commission. Institute for European Environmental Policy (IEEP), Brussels, Belgium. 32 pp. Kettunen, M., Genovesi, P., Gollasch, S., Pagad, S., Starfinger, U., ten Brink, P. & Shine, C. 2009. Technical support to EU strategy on invasive species (IAS) - Assessment of the impacts of IAS in Europe and the EU. Final report for the European Commission. Institute for European Environmental Policy (IEEP), Brussels, Belgium. 44 pp + Annexes. Shine, C., Kettunen, M., Mapendembe, A., Herkenrath, P. Silvestri, S. & ten Brink, P. 2009. Technical support to EU strategy on invasive species (IAS) – Analysis of the impacts of policy options/measures to address IAS. -
Cerithium Scabridum Ordine Caenogastropoda Philippi 1848 Famiglia Cerithidae
Identificazione e distribuzione nei mari italiani di specie non indigene Classe Gastropoda Cerithium scabridum Ordine Caenogastropoda Philippi 1848 Famiglia Cerithidae SINONIMI RILEVANTI Gourmya (Gladiocerithium) argutum barashi Nordsieck, 1972 Cerithium scabridum var. hispida Pallary, 1938 Cerithium yerburyi Smith, 1891 Cerithium levantinum, Smith, 1891 DESCRIZIONE COROLOGIA / AFFINITA’ Senza dati. Conchiglia alto-spiralata, lunga circa 3 volte la larghezza, di 9-10 giri. Scultura sulle spire formata da 3 corde spirali separate da interspazi e deboli DISTRIBUZIONE ATTUALE pieghe assiali che determinano con l'intersezione Oceano Indiano, Mar Rosso, Golfo Persico, dei giri dei pronunciati tubercoli. Canale sifonale Mediterraneo: Egitto, Israele, Libano, Cipro, piccolo. Turchia, Tunisia, Italia, Grecia. COLORAZIONE PRIMA SEGNALAZIONE IN MEDITERRANEO Conchiglia piramidale, solida di colore bruno Port Said, Egitto (Keller, 1883). chiaro. Ornamentazioni sulle spire di colore nero. PRIMA SEGNALAZIONE IN ITALIA FORMULA MERISTICA Baia di Augusta (Costa orientale siciliana) [Piani, 1979. - TAGLIA MASSIMA ORIGINE - Oceano Indiano. STADI LARVALI Larve planctotrofiche VIE DI DISPERSIONE PRIMARIE Progressiva penetrazione attraverso il Canale di Suez. SPECIE SIMILI Cerithium rupestre VIE DI DISPERSIONE SECONDARIE CARATTERI DISTINTIVI - - Identificazione e distribuzione nei mari italiani di specie non indigene HABITAT STATO DELL ’INVASIONE Recent conist. Vive su substrati rocciosi, fangosi e sulle prateria a fanerogame. MOTIVI DEL SUCCESSO Sconosciuti. PARTICOLARI CONDIZIONI AMBIENTALI Sconosciute. SPECIE IN COMPETIZIONE Cerithium rupestre BIOLOGIA IMPATTI L'alta variabilità genetica potrebbe giustificare il - successo che questa specie ha avuto nel colonizzare molte aree del Mediterraneo. Studi sul DANNI ECOLOGICI ciclo riproduttivo hanno evidenziato una strategia - riproduttiva di tipo “r”. Presenta una vita larvale pelagica molto lunga che consentirebbe ai giovani individui una grande capacità di dispersione. -
Genetic Variation in Polyploid Forage Grass: Assessing the Molecular Genetic Variability in the Paspalum Genus Cidade Et Al
Genetic variation in polyploid forage grass: Assessing the molecular genetic variability in the Paspalum genus Cidade et al. Cidade et al. BMC Genetics 2013, 14:50 http://www.biomedcentral.com/1471-2156/14/50 Cidade et al. BMC Genetics 2013, 14:50 http://www.biomedcentral.com/1471-2156/14/50 RESEARCH ARTICLE Open Access Genetic variation in polyploid forage grass: Assessing the molecular genetic variability in the Paspalum genus Fernanda W Cidade1, Bianca BZ Vigna2, Francisco HD de Souza2, José Francisco M Valls3, Miguel Dall’Agnol4, Maria I Zucchi5, Tatiana T de Souza-Chies6 and Anete P Souza1,7* Abstract Background: Paspalum (Poaceae) is an important genus of the tribe Paniceae, which includes several species of economic importance for foraging, turf and ornamental purposes, and has a complex taxonomical classification. Because of the widespread interest in several species of this genus, many accessions have been conserved in germplasm banks and distributed throughout various countries around the world, mainly for the purposes of cultivar development and cytogenetic studies. Correct identification of germplasms and quantification of their variability are necessary for the proper development of conservation and breeding programs. Evaluation of microsatellite markers in different species of Paspalum conserved in a germplasm bank allowed assessment of the genetic differences among them and assisted in their proper botanical classification. Results: Seventeen new polymorphic microsatellites were developed for Paspalum atratum Swallen and Paspalum notatum Flüggé, twelve of which were transferred to 35 Paspalum species and used to evaluate their variability. Variable degrees of polymorphism were observed within the species. Based on distance-based methods and a Bayesian clustering approach, the accessions were divided into three main species groups, two of which corresponded to the previously described Plicatula and Notata Paspalum groups. -
Worldwide Genetic Variation in Dopamine and Serotonin Pathway
American Journal of Medical Genetics Part B (Neuropsychiatric Genetics) 147B:1070–1075 (2008) Worldwide Genetic Variation in Dopamine and Serotonin Pathway Genes: Implications for Association Studies Michelle Gardner,1,2 Jaume Bertranpetit,1,2 and David Comas1,2* 1Unitat de Biologia Evolutiva, Universitat Pompeu Fabra, Doctor Aiguader, Barcelona, Spain 2CIBER Epidemiologı´a y Salud Pu´blica (CIBERESP), Barcelona, Spain The dopamine and serotonin systems are two of the most important neurotransmitter pathways in Please cite this article as follows: Gardner M, Bertran- the human nervous system and their roles in petit J, Comas D. 2008. Worldwide Genetic Variation controlling behavior and mental status are well in Dopamine and Serotonin Pathway Genes: Implica- accepted. Genes from both systems have been tions for Association Studies. Am J Med Genet widely implicated in psychiatric and behavioral Part B 147B:1070–1075. disorders, with numerous reports of associations and almost equally as numerous reports of the failure to replicate a previous finding of associa- tion. We investigate a set of 21 dopamine and serotonin genes commonly tested for association INTRODUCTION with psychiatric disease in a set of 39 worldwide The dopamine and serotonin systems are two of the major populations representing global genetic diversity neurotransmitter systems in humans. Dopamine affects brain to see whether the failure to replicate findings of processes that control both motor and emotional behavior and association may be explained by population based it is known to have a role in the brain’s reward mechanism differences in allele frequencies and linkage [Schultz, 2002]. Serotonin has a critical role in temperature disequilibrium (LD) in this gene set. -
1055.Full.Pdf
Copyright 1999 by the Genetics Society of America Evolution of Genetic Variability and the Advantage of Sex and Recombination in Changing Environments Reinhard BuÈrger Institut fuÈr Mathematik, UniversitaÈt Wien, A-1090 Wien, Austria and International Institute of Applied Systems Analysis, A-2361 Laxenburg, Austria Manuscript received February 22, 1999 Accepted for publication May 12, 1999 ABSTRACT The role of recombination and sexual reproduction in enhancing adaptation and population persistence in temporally varying environments is investigated on the basis of a quantitative-genetic multilocus model. Populations are ®nite, subject to density-dependent regulation with a ®nite growth rate, diploid, and either asexual or randomly mating and sexual with or without recombination. A quantitative trait is determined by a ®nite number of loci at which mutation generates genetic variability. The trait is under stabilizing selection with an optimum that either changes at a constant rate in one direction, exhibits periodic cycling, or ¯uctuates randomly. It is shown by Monte Carlo simulations that if the directional- selection component prevails, then freely recombining populations gain a substantial evolutionary advan- tage over nonrecombining and asexual populations that goes far beyond that recognized in previous studies. The reason is that in such populations, the genetic variance can increase substantially and thus enhance the rate of adaptation. In nonrecombining and asexual populations, no or much less increase of variance occurs. It is explored by simulation and mathematical analysis when, why, and by how much genetic variance increases in response to environmental change. In particular, it is elucidated how this change in genetic variance depends on the reproductive system, the population size, and the selective regime, and what the consequences for population persistence are. -
Review Questions Meiosis
Review Questions Meiosis 1. Asexual reproduction versus sexual reproduction: which is better? Asexual reproduction is much more efficient than sexual reproduction in a number of ways. An organism doesn’t have to find a mate. An organism donates 100% of its’ genetic material to its offspring (with sex, only 50% end up in the offspring). All members of a population can produce offspring, not just females, enabling asexual organisms to out-reproduce sexual rivals. 2. So why is there sex? Why are there boys? If females can reproduce easier and more efficiently asexually, then why bother with males? Sex is good for evolution because it creates genetic variety. All organisms depend on mutations for genetic variation. Sex takes these preexisting traits (created by mutations) and shuffles them into new combinations (genetic recombination). For example, if we wanted a rice plant that was fast-growing but also had a high yield, we would have to wait a long time for a fast-growing rice to undergo a mutation that would also make it highly productive. An easy way to combine these two desirable traits is through sexually reproduction. By breeding a fast-growing variety with a high-yielding variety, we can create offspring with both traits. In an asexual organism, all the offspring are genetically identical to the parent (unless there was a mutation) and genetically identically to each other. Sexual reproduction creates offspring that are genetically different from the parents and genetically different from their siblings. In a stable environment, asexual reproduction may work just fine. However, most ecosystems are dynamic places. -
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MISCELLANEOUS PUBLICATION OCCASIONAL PAPER NO. 28 Records of the Zoological Survey of India Contribution to the Molluscan Fauna of India Part II. Marine Molluscs of the Coromandel Coast, Palk Bay and Gulf of Mannar Gastropoda : Mesogastropoda (Partim) by A. S. Rajagopal and H. P. Mookherjee Is·sued by the Director Zoological Survey of India, Calcutta RECORDS OF THE ZOOLOGICAL SURVEY OF INDIA MISCELLANEOUS PUBLICATION OCCASIONAL PAPER NO. 28 CONTRmUTION TO THE MOLLUSCAN FAUNA OF INDIA PART 'II. MARINE MOLLUSCS OF THE COROMANDEL COAST, PALK BAY AND GULF OF MANNAR GASTROPODA: 'MESOGASTROPADA (PART 1M) By A. S. RAJAGOPAL AND H. P. MOOKHERJEE Zoological Survey of India, Calcutt~ Edited by the Director,. Zoological Survey of India 1983 © Copyright 1982, Government of India Published in June, 1982 PRICE: Inland: Rs. 20'00 Foreign: £ 2-50 $ 3-5Q Printed in India by A. K, Chatterjee at Jnanodaya Press, SSB Kabi Sukanta Sarani, Calcutta 700 085 and published by the Director, Zoological Survey of India, Calcutta RECORDS OF THE ZOOLOGICAL SURVEY OF INDIA MISCELLANEOUS PUBLICATION Occasional Paper ·No. 28 1982 Pages 1-53 -- CONTENTS Pages INTRODUCTION ••• ••• • •• I ABBREVIA nONS USED ••• .... • •• 2 SYSTEMATIC ACCOUNT ••• • •• • •• s SUMMARY ••• • •• • •• SO ACKNOWLEDGEMENTS ... • •• ... SO REFERENCES ... • •• • •• 51 CONTRIBUTIONS TO THE MOLLUSCAN FAUNA OF INDIA. PART 11. MARINE MOLLUSCS OF THE COROMANDEL COAST, PALK BAY AND GULF Of" MANNAR-GASTROPODA : MESOGASTROPODA (PARTIM). By A. S. RAJAGOPAL AND H. P. MOOKHERJEE Zoological Survey of India, Calcutta. INTRODUCTION This is the second contribution in the series, "Contributions to the molluscan fauna of India." In the earlier part systematic studies on the order Archaeogastropoda was completed by the present authors (Rajagopal and Mookherjee, 1978). -
Alien Species in the Mediterranean Sea by 2010
Mediterranean Marine Science Review Article Indexed in WoS (Web of Science, ISI Thomson) The journal is available on line at http://www.medit-mar-sc.net Alien species in the Mediterranean Sea by 2010. A contribution to the application of European Union’s Marine Strategy Framework Directive (MSFD). Part I. Spatial distribution A. ZENETOS 1, S. GOFAS 2, M. VERLAQUE 3, M.E. INAR 4, J.E. GARCI’A RASO 5, C.N. BIANCHI 6, C. MORRI 6, E. AZZURRO 7, M. BILECENOGLU 8, C. FROGLIA 9, I. SIOKOU 10 , D. VIOLANTI 11 , A. SFRISO 12 , G. SAN MART N 13 , A. GIANGRANDE 14 , T. KATA AN 4, E. BALLESTEROS 15 , A. RAMOS-ESPLA ’16 , F. MASTROTOTARO 17 , O. OCA A 18 , A. ZINGONE 19 , M.C. GAMBI 19 and N. STREFTARIS 10 1 Institute of Marine Biological Resources, Hellenic Centre for Marine Research, P.O. Box 712, 19013 Anavissos, Hellas 2 Departamento de Biologia Animal, Facultad de Ciencias, Universidad de Ma ’laga, E-29071 Ma ’laga, Spain 3 UMR 6540, DIMAR, COM, CNRS, Université de la Méditerranée, France 4 Ege University, Faculty of Fisheries, Department of Hydrobiology, 35100 Bornova, Izmir, Turkey 5 Departamento de Biologia Animal, Facultad de Ciencias, Universidad de Ma ’laga, E-29071 Ma ’laga, Spain 6 DipTeRis (Dipartimento per lo studio del Territorio e della sue Risorse), University of Genoa, Corso Europa 26, 16132 Genova, Italy 7 Institut de Ciències del Mar (CSIC) Passeig Mar tim de la Barceloneta, 37-49, E-08003 Barcelona, Spain 8 Adnan Menderes University, Faculty of Arts & Sciences, Department of Biology, 09010 Aydin, Turkey 9 c\o CNR-ISMAR, Sede Ancona, Largo Fiera della Pesca, 60125 Ancona, Italy 10 Institute of Oceanography, Hellenic Centre for Marine Research, P.O. -
Contemporary and Historic Factors Influence Differently Genetic
Heredity (2015) 115, 216–224 & 2015 Macmillan Publishers Limited All rights reserved 0018-067X/15 www.nature.com/hdy ORIGINAL ARTICLE Contemporary and historic factors influence differently genetic differentiation and diversity in a tropical palm C da Silva Carvalho1,2, MC Ribeiro2, MC Côrtes2, M Galetti2 and RG Collevatti1 Population genetics theory predicts loss in genetic variability because of drift and inbreeding in isolated plant populations; however, it has been argued that long-distance pollination and seed dispersal may be able to maintain gene flow, even in highly fragmented landscapes. We tested how historical effective population size, historical migration and contemporary landscape structure, such as forest cover, patch isolation and matrix resistance, affect genetic variability and differentiation of seedlings in a tropical palm (Euterpe edulis) in a human-modified rainforest. We sampled 16 sites within five landscapes in the Brazilian Atlantic forest and assessed genetic variability and differentiation using eight microsatellite loci. Using a model selection approach, none of the covariates explained the variation observed in inbreeding coefficients among populations. The variation in genetic diversity among sites was best explained by historical effective population size. Allelic richness was best explained by historical effective population size and matrix resistance, whereas genetic differentiation was explained by matrix resistance. Coalescence analysis revealed high historical migration between sites within landscapes and constant historical population sizes, showing that the genetic differentiation is most likely due to recent changes caused by habitat loss and fragmentation. Overall, recent landscape changes have a greater influence on among-population genetic variation than historical gene flow process. As immediate restoration actions in landscapes with low forest amount, the development of more permeable matrices to allow the movement of pollinators and seed dispersers may be an effective strategy to maintain microevolutionary processes. -
Genetic Variation in Subdivided Populations and Conservation Genetics
Heredity 57 (1986) 189—198 The Genetical Society of Great Britain Received 19 November 1985 Geneticvariation in subdivided populations and conservation genetics Sirkka-Liisa Varvio*, University of Texas Health Science Center at Ranajit Chakraborty and Masatoshi Nei Houston, Center for Demographic and Population Genetics, P.O. Box 20334, Houston, Texas 77225 The genetic differentiation of populations is usually studied by using the equilibrium theory of Wright's infinite island model. In practice, however, populations are not always in equilibrium, and the number of subpopulations is often very small. To get some insight into the dynamics of genetic differentiation of these populations, numerical computations are conducted about the expected gene diversities within and between subpopulations by using the finite island model. It is shown that the equilibrium values of gene diversities (H and H) and the coefficient of genetic differentiation (G) depend on the pattern of population subdivision as well as on migration and that the GST value is always smaller than that for the infinite island model. When the number of migrants per subpopulation per generation is greater than 1, the equilibrium values of H and HT are close to those for panmictic populations, as noted by previous authors. However, the values of H, HT, and GST in transient populations depend on the pattern of population subdivision, and it may take a long time for them to reach the 95 per cent range of the equilibrium values. The implications of the results obtained for the conservation of genetic variability in small populations are discussed. It is argued that any single principle should not be imposed as a general guideline for the management of small populations. -
Adaptation from Standing Genetic Variation to a Moving Phenotypic Optimum
HIGHLIGHTED ARTICLE GENETICS | INVESTIGATION Catch Me if You Can: Adaptation from Standing Genetic Variation to a Moving Phenotypic Optimum Sebastian Matuszewski,*,1 Joachim Hermisson,*,† and Michael Kopp‡ *Mathematics and BioSciences Group, Faculty of Mathematics, University of Vienna, A-1090 Vienna, Austria, †Max F. Perutz Laboratories, A-1030 Vienna, Austria, and ‡Aix Marseille Université, Centre National de la Recherche Scientifique, Centrale Marseille, I2M, Unité Mixte de Recherche 7373, 13453 Marseille, France ABSTRACT Adaptation lies at the heart of Darwinian evolution. Accordingly, numerous studies have tried to provide a formal framework for the description of the adaptive process. Of these, two complementary modeling approaches have emerged: While so- called adaptive-walk models consider adaptation from the successive fixation of de novo mutations only, quantitative genetic models assume that adaptation proceeds exclusively from preexisting standing genetic variation. The latter approach, however, has focused on short-term evolution of population means and variances rather than on the statistical properties of adaptive substitutions. Our aim is to combine these two approaches by describing the ecological and genetic factors that determine the genetic basis of adaptation from standing genetic variation in terms of the effect-size distribution of individual alleles. Specifically, we consider the evolution of a quantitative trait to a gradually changing environment. By means of analytical approximations, we derive the distribution