Woylie Conservation Research Project
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Chapter 1. Introduction
Chapter 1: Introduction Chapter 1. Introduction Research and ecological context Importance of the mutualistic symbiosis Truffle-like fungi are an important component in many terrestrial ecosystems. They provide a food resource for mycophagous (‘fungus-eating’) animals and are an essential symbiont for many plant species (Claridge 2002; Brundrett 2009). Most truffle-like fungi are considered ectomycorrhizal (EcM) in which the fungus hyphae penetrate the plant root structure and form a sheath (‘Hartig Net’) around plant root tips. This enables the exchange of water, minerals, and metabolites between fungus and plant (Nehls et al. 2010). The fungus can form extensive networks of mycelium in the soil extending the effective surface of the plant-host root system. EcM fungi can also confer resistance to parasites, predators, pathogens, and heavy-metal pollution, as well as the breakdown of inorganic substrates (Claridge 2002; Gadd 2007; Bonfante & Genre 2010). EcM fungi can reproduce through mycelia (vegetative) growth or through spores. Truffle-like EcM fungi form reproductive below-ground (hypogeous) fruit-bodies (sporocarps) in which spores are entirely or partly enclosed within fungal tissue of the sporocarp (‘sequestrate’), and often referred to as ‘truffles’. The sporocarps of these fungi (‘truffles’) generally require excavation and consumption by mycophagous mammals for spores to be liberated and dispersed to new locations (Johnson 1996; Bougher & Lebel 2001). In contrast, epigeous or ‘mushroom-like’ fungi produce stipitate above-ground sporocarps in which spores are not enclosed within fungal tissue and are actively or passively discharged into the surrounding environment. Consequently, truffle-like taxa are considered to have evolved to be reliant on mycophagous animals for their dispersal. -
Ectomycorrhizal Fungal Communities Are Dominated by Mammalian Dispersed Truffle-Like Taxa in North-East Australian Woodlands
Mycorrhiza https://doi.org/10.1007/s00572-019-00886-2 ORIGINAL ARTICLE Ectomycorrhizal fungal communities are dominated by mammalian dispersed truffle-like taxa in north-east Australian woodlands S. J. Nuske1,2 & S. Anslan3 & L. Tedersoo4 & B. C. Congdon5 & S. E. Abell1 Received: 7 November 2018 /Accepted: 5 March 2019 # The Author(s) 2019 Abstract Mycorrhizal fungi are very diverse, including those that produce truffle-like fruiting bodies. Truffle-like fungi are hypogeous and sequestrate (produced below-ground, with an enclosed hymenophore) and rely on animal consumption, mainly by mammals, for spore dispersal. This dependence links mycophagous mammals to mycorrhizal diversity and, assuming truffle-like fungi are important components of mycorrhizal communities, to plant nutrient cycling and ecosystem health. These links are largely untested as currently little is known about mycorrhizal fungal community structure and its dependence on mycophagous mammals. We quantified the mycorrhizal fungal community in the north-east Australian woodland, including the portion interacting with ten species of mycophagous mammals. The study area is core habitat of an endangered fungal specialist marsupial, Bettongia tropica, and as such provides baseline data on mycorrhizal fungi-mammal interactions in an area with no known mammal declines. We examined the mycorrhizal fungi in root and soil samples via high-throughput sequencing and compared the observed taxa to those dispersed by mycophagous mammals at the same locations. We found that the dominant root-associating ectomycorrhizal fungal taxa (> 90% sequence abundance) included the truffle-like taxa Mesophellia, Hysterangium and Chondrogaster. These same taxa were also present in mycophagous mammalian diets, with Mesophellia often dominating. -
Sequestrate Fungi from Patagonian Nothofagus Forests: Cystangium (Russulaceae, Basidiomycota)
Sequestrate fungi from Patagonian Nothofagus forests: Cystangium (Russulaceae, Basidiomycota) Trierveiler-Pereira, L., Smith, M. E., Trappe, J. M., & Nouhra, E. R. (2015). Sequestrate fungi from Patagonian Nothofagus forests: Cystangium (Russulaceae, Basidiomycota). Mycologia, 107(1), 90-103. doi:10.3852/13-302 10.3852/13-302 Allen Press Inc. Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Mycologia, 107(1), 2015, pp. 90–103. DOI: 10.3852/13-302 # 2015 by The Mycological Society of America, Lawrence, KS 66044-8897 Sequestrate fungi from Patagonian Nothofagus forests: Cystangium (Russulaceae, Basidiomycota) Larissa Trierveiler-Pereira1 Ectomycorrhizal, hypogeous fungi in the Basidio- PPGBOT, Department of Botany, Universidade Federal mycota and Ascomycota are important components of do Rio Grande do Sul, Porto Alegre, Brazil 91501-970 the forest soil environment. Not only do they function Matthew E. Smith as nutrient absorbing organisms for their tree hosts, Department of Plant Pathology, University of Florida, these fungi also improve soil conditions (Perry et al. Gainesville, Florida 32611 1989) and interact with a variety of forest organisms (Trappe and Luoma 1992). In particular, they are an James M. Trappe important food source for animals in ectomycorrhizal Department of Forest Ecosystems and Society, Oregon forests (Maser et al. 1978, Claridge et al. 2002, Vernes State University, Corvallis, Oregon 97331 et al. 2004, Claridge and Trappe 2005, Trappe et al. Eduardo R. Nouhra 2006, Vernes 2010, Katarzˇyte˙ and Kutorga 2011, Instituto Multidisciplinario de Biologı´a Vegetal Schickmann et al. 2012), including those of Argentina (CONICET), Universidad Nacional de Co´rdoba, (Perez Calvo et al. 1989, Nouhra et al. 2005). -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
Duke University Dissertation Template
Systematics, Phylogeography and Ecology of Elaphomycetaceae by Hannah Theresa Reynolds Department of Biology Duke University Date:_______________________ Approved: ___________________________ Rytas Vilgalys, Supervisor ___________________________ Marc Cubeta ___________________________ Katia Koelle ___________________________ François Lutzoni ___________________________ Paul Manos Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biology in the Graduate School of Duke University 2011 iv ABSTRACTU Systematics, Phylogeography and Ecology of Elaphomycetaceae by Hannah Theresa Reynolds Department of Biology Duke University Date:_______________________ Approved: ___________________________ Rytas Vilgalys, Supervisor ___________________________ Marc Cubeta ___________________________ Katia Koelle ___________________________ François Lutzoni ___________________________ Paul Manos An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biology in the Graduate School of Duke University 2011 Copyright by Hannah Theresa Reynolds 2011 Abstract This dissertation is an investigation of the systematics, phylogeography, and ecology of a globally distributed fungal family, the Elaphomycetaceae. In Chapter 1, we assess the literature on fungal phylogeography, reviewing large-scale phylogenetics studies and performing a meta-data analysis of fungal population genetics. In particular, we examined -
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AN ABSTRACT OF THE DISSERTATIONOF Kentaro Hosaka for the degree of Doctor ofPhilosophy in Botany and Plant Pathology presented on October 26, 2005. Title: Systematics, Phylogeny, andBiogeography of the Hysterangiales and Related Taxa (Phallomycetidae, Homobasidiomycetes). Abstract approved: Redacted for Privacy Monophyly of the gomphoid-phalloid dadewas confirmed based on multigene phylogenetic analyses. Four major subclades(Hysterangiales, Geastrales, Gomphales and Phallales) were also demonstratedto be monophyletic. The interrelationships among the subclades were, however, not resolved, andalternative topologies could not be rejected statistically. Nonetheless,most analyses showed that the Hysterangiales and Phallales do not forma monophyletic group, which is in contrast to traditional taxonomy. The higher-level phylogeny of thegomphoid-phalloid fungi tends to suggest that the Gomphales form a sister group with either the Hysterangialesor Phallales. Unweighted parsimonycharacter state reconstruction favorsthe independent gain of the ballistosporic mechanism in the Gomphales, but the alternativescenario of multiple losses of ballistospoiy could not be rejected statistically underlikelihood- based reconstructions. This latterhypothesis is consistent with thewidely accepted hypothesis that the loss of ballistosporyis irreversible. The transformationof fruiting body forms from nongastroid to gastroidwas apparent in the lineage leading to Gautieria (Gomphales), but thetree topology and character statereconstructions supported that truffle-like -
Chapter 1. Thesis Introduction and Rationale
Chapter 1. Thesis introduction and rationale Interrelationships between mammals, mycorrhizal fungi and plants: the ecological importance of mycophagy MYCORRHIZAS Fungal interactions shape ecosystems. Most plants in natural ecosystems form mycorrhizal associations (mycorrhizas) with specialised soil fungi (Brundrett 1991; Smith and Read 1997). Mycorrhizas are highly-evolved mutualistic symbioses usually benefiting both plant and fungus (Brundrett 2004) and contributing to ecosystem function (Read 1991; Amaranthus and Perry 1994). Hyphae of mycorrhizal fungi are the primary interface between the soil and the roots of mycorrhizal plants, facilitating uptake of water and nutrients by the plant (Harley 1971; Smith and Read 1997). In return, the fungus acquires photosynthates (carbon) from the plant (Harley 1971; Smith and Read 1997). Mycorrhizal fungi play an important role in soil carbon fluxes (Treseder and Allen 2000; Hobbie 2006; Talbot et al. 2008; Wilson et al. 2009) and mediate interactions and transfer nutrients between individual plants, linking plant communities in extensive shared mycorrhizal networks (Simard and Durall 2004; Beiler et al. 2010). The type and ecology of mycorrhizal associations is determined by host plant, fungus, and soil and other environmental factors (Brundrett 1991). Mycorrhizal fungal ecology is an emerging field; the ecological roles and functions of many mycorrhizal fungi are poorly known (Lilleskov and Bruns 2001; Lilleskov and Parrent 2007). Ectomycorrhizas (EM) and arbuscular mycorrhizas (AM) are the two most common mycorrhizal types. EM, formed by species of Basidiomycota, Ascomycota, and Endogone (Zygomycota), develop extensive hyphal systems outside of the host plant root, form sheaths around the root, and do not usually penetrate the host plant cells, while AM penetrate host cells and are formed by species in the 1 Introduction Glomeromycota (Brundrett 1991). -
Diversity, Ecology, and Conservation of Truffle Fungi in Forests of the Pacific Northwest
United States Department of Agriculture Diversity, Ecology, and Forest Service Conservation of Truffle Pacific Northwest Research Station Fungi in Forests of the General Technical Report PNW-GTR-772 April 2009 Pacific Northwest James M. Trappe, Randy Molina, Daniel L. Luoma, D E E P R A U R T LT MENT OF AGRICU Efren Cázares, David Pilz, Jane E. Smith, Michael A. Castellano, Steven L. Miller, and Matthew J. Trappe Authors James M. Trappe is a professor, Department of Forest Science, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331; he prepared sections on history of truffle science in the Pacific Northwest (PNW), evolution, and diversity of truffles. Randy Molina is a research botanist (retired), U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station, Forestry Sciences Laboratory, 629 SW Main, Suite 400, Portland, OR 97205; he prepared sections on introductory concepts, mycorrhizal symbiosis and specificity, fungal rarity, management principles, and historical contributions of James Trappe to truffle science in the PNW. Daniel L. Luoma is an assistant professor, Department of Forest Science, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331; he prepared sections on community ecology, mycophagy, silvicultural effects, and inventory methods. Efren Cázares is an affiliate faculty member, Department of Forest Science, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331; he prepared sections on genera descriptions. David Pilz is an affiliate faculty member, Department of Forest Science, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331; he prepared sections on culinary truffles. Jane E. Smith is a research botanist and Michael Castellano is a research forester, U.S. -
14 Agaricomycetes
14 Agaricomycetes 1 2 3 4 5 1 6 D.S. HIBBETT ,R.BAUER ,M.BINDER , A.J. GIACHINI ,K.HOSAKA ,A.JUSTO ,E.LARSSON , 7 8 1,9 1 6 10 11 K.H. LARSSON , J.D. LAWREY ,O.MIETTINEN , L.G. NAGY , R.H. NILSSON ,M.WEISS , R.G. THORN CONTENTS F. Hymenochaetales . ...................... 396 G. Polyporales . ...................... 397 I. Introduction ................................. 373 H. Thelephorales. ...................... 399 A. Higher-Level Relationships . ............ 374 I. Corticiales . ................................ 400 B. Taxonomic Characters and Ecological J. Jaapiales. ................................ 402 Diversity. ...................... 376 K. Gloeophyllales . ...................... 402 1. Septal Pore Ultrastructure . ........ 376 L. Russulales . ................................ 403 2. Fruiting Bodies. .................. 380 M. Agaricomycetidae . ...................... 405 3. Ecological Roles . .................. 383 1. Atheliales and Lepidostromatales . 406 C. Fossils and Molecular Clock Dating . 386 2. Amylocorticiales . .................. 406 II. Phylogenetic Diversity ...................... 387 3. Boletales . ............................ 407 A. Cantharellales. ...................... 387 4. Agaricales . ............................ 409 B. Sebacinales . ...................... 389 III. Conclusions.................................. 411 C. Auriculariales . ...................... 390 References. ............................ 412 D. Phallomycetidae . ...................... 391 1. Geastrales. ............................ 391 2. Phallales . -
Hysterangiales Revisited: Expanded Phylogeny Reveals New Genera and Two New Suborders
VOLUME 8 DECEMBER 2021 Fungal Systematics and Evolution PAGES 65–80 doi.org/10.3114/fuse.2021.08.06 Hysterangiales revisited: expanded phylogeny reveals new genera and two new suborders N. Davoodian1*, T. Lebel1,2, M.A. Castellano3, K. Hosaka4 1Royal Botanic Gardens Victoria, South Yarra, VIC 3141, Australia 2Botanic Gardens and State Herbarium of South Australia, Adelaide, SA 5001, Australia; Royal Botanic Gardens Victoria, South Yarra, VIC 3141, Australia 3US Department of Agriculture Forest Service, Northern Research Station, Corvallis, OR 97331, USA 4National Museum of Nature and Science, Tsukuba, Ibaraki 305-0005, Japan (ORCID: 0000-0002-4469-8303) *Corresponding author: [email protected] Key words: Abstract: Hysterangiales (Phallomycetidae, Agaricomycetes, Basidiomycota) is a diverse, nearly cosmopolitan order atp6 of predominantly hypogeous, sequestrate, ectomycorrhizal fungi. Expanding on previously published phylogenies, we Phallogaster significantly increased sampling of Hysterangiales specimens, emphasizing representatives from Australia. Using protein- phylogenetics coding genes atp6 (adenosine triphosphate synthase subunit 6) and tef1 (translation elongation factor 1-α), we recovered tef1 26 provisional novel genera, and corroborated existing genera and families. Further, two new suborders (Phallogastrineae Trappea subord. nov. and Hysterangineae subord. nov.) and a new family (Phallogastraceae fam. nov.) are described, and three new combinations made to Phallogaster. Aspects of classification and biogeography are presented. Citation: Davoodian N, Lebel T, Castellano MA, Hosaka K (2021). Hysterangiales revisited: expanded phylogeny reveals new genera and two new suborders. Fungal Systematics and Evolution 8: 65–80. doi: 10.3114/fuse.2021.08.06 Received: 22 January 2021; Accepted: 9July 2021; Effectively published online: 29 July 2021 Corresponding editor: P.W. -
Lineages of Ectomycorrhizal Fungi Revisited: Foraging Strategies and Novel Lineages Revealed by 5 Sequences from Belowground
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/41623951 Ectomycorrhizal lifestyle in fungi: Global diversity, distribution, and evolution of phylogenetic lineages Article in Mycorrhiza · September 2009 DOI: 10.1007/s00572-009-0274-x · Source: PubMed CITATIONS READS 670 2,140 3 authors, including: Leho Tedersoo Tom W. May University of Tartu Royal Botanic Gardens Victoria 218 PUBLICATIONS 18,775 CITATIONS 153 PUBLICATIONS 7,448 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: UNITE - DNA based species identification and communication View project General Committee on Nomenclature (ICN) View project All content following this page was uploaded by Leho Tedersoo on 04 January 2015. The user has requested enhancement of the downloaded file. fungal biology reviews 27 (2013) 83e99 journal homepage: www.elsevier.com/locate/fbr Review Lineages of ectomycorrhizal fungi revisited: Foraging strategies and novel lineages revealed by 5 sequences from belowground Leho TEDERSOOa,*, Matthew E. SMITHb,** aNatural History Museum and Institute of Ecology and Earth Sciences, Tartu University, 14A Ravila, 50411 Tartu, Estonia bDepartment of Plant Pathology, University of Florida, Gainesville, FL, USA article info abstract Article history: In the fungal kingdom, the ectomycorrhizal (EcM) symbiosis has evolved independently in Received 29 April 2013 multiple groups that are referred to as lineages. A growing number of molecular studies in Received in revised form the fields of mycology, ecology, soil science, and microbiology generate vast amounts of 10 September 2013 sequence data from fungi in their natural habitats, particularly from soil and roots. -
Truffle Biodiversity and Distribution
12/08/2019 Elaphomyces Solioccasus aurantius polychromus Trappe et al. 2013 Mycologia 105: 888-895 Castellano et al. 2011 Australian Systematic Botany 24: 32-57 Macrolepiota Gautieria Truffle biodiversity and turbinata angustispora distribution Lebel and Syme 2012 Mycologia 104: 496-520 http://www.natruffling.org/gaa Susan Nuske PhD n.htm Cortinarius Mesophellia SLU, Umeå Rossbeevera Aroramyces argyrionus sp. Spongiforma paracyanea squarepantsii gelatinosporus © Susan Nuske © Susan Nuske Orihara et al 2016 Persoonia 37: 173-198 Desjardin et al 2011 Mycologia 103: 1119-1123 © Susan Nuske Danks et al. 2010 Persoonia 24: 106- 126 © Susan Nuske Content A confusion of terms • What is a truffle? •Gastioid vs Gasteroid •Sequestrate vs Secotioid • Major truffle groups • Why are endangered mammals important for truffle diversity in •Hypogeous and epigeous Australia? •What is a truffle!? Solioccasus Elaphomyces aurantius Cortinarius argyrionus polychromus Major truffle groups • Ascomycota • Trappe et al. 2013 Mycologia Eurotiales e.g. Elaphomyces Castellano et al. 2011 105: 888-895 • ”SEQUESTRATE - describes fungal fruit bodies which have evolved • Pezizales e.g. Tuber, Amalyscus Australian Systematic Botany Danks et al. 2010 Persoonia 24: 32-57 24: 106-126 from exposed hymenia and forcibly discharged spores to a closed or • Basidiomycota Aroramyces gelatinosporus Gautieria angustispora even hypogeous habit in which the spores are retained in the fruit • Agaricales e.g. Cortinarius (Thaxterogaster) Mesophellia sp. • Boletales e.g. Rhizopogon, Solioccasus body until it decays or is eaten by an animal vector. Many sequestrate • Geastrales e.g. Geastrum taxa can be clearly recognized as being derived from specific spore- • Gomphales e.g. Gautieria • Hysterangiales e.g. Mesophellia, shooting ancestors, e.g.