Getting to Evo-Devo: Concepts and Challenges for Students Learning Evolutionary Developmental Biology Anna Hiatt
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From Developmental Constraint to Evolvability
From Developmental Constraint to Evolvability How Concepts Figure in Explanation and Disciplinary Identity Ingo Brigandt Department of Philosophy, University of Alberta 2-40 Assiniboia Hall, Edmonton, AB T6G2E7, Canada [email protected] Abstract The concept of developmental constraint was at the heart of develop- mental approaches to evolution of the 1980s. While this idea was widely used to criticize neo-Darwinian evolutionary theory, critique does not yield an alternative framework that offers evolutionary explanations. In current Evo-devo the concept of constraint is of minor importance, whereas notions as evolvability are at the center of attention. The latter clearly defines an explanatory agenda for evolution- ary research, so that one could view the historical shift from ‘developmental con- straint’ towards ‘evolvability’ as the move from a concept that is a mere tool of criticism to a concept that establishes a positive explanatory project. However, by taking a look at how the concept of constraint was employed in the 1980s, I argue that developmental constraint was not just seen as restricting possibilities (‘con- straining’), but also as facilitating morphological change in several ways. Ac- counting for macroevolutionary transformation and the origin of novel form was an aim of these developmental approaches to evolution. Thus, the concept of de- velopmental constraint was part of a positive explanatory agenda long before the advent of Evo-devo as a genuine scientific discipline. In the 1980s, despite the lack of a clear disciplinary identity, this concept coordinated research among pale- ontologists, morphologists, and developmentally inclined evolutionary biologists. I discuss the different functions that scientific concepts can have, highlighting that instead of classifying or explaining natural phenomena, concepts such as ‘devel- opmental constraint’ and ‘evolvability’ are more important in setting explanatory agendas so as to provide intellectual coherence to scientific approaches. -
Toward an Extended Evolutionary Synthesis 10-13 July 2008
18th Altenberg Workshop in Theoretical Biology 2008 Toward an Extended Evolutionary Synthesis 10-13 July 2008 organized by Massimo Pigliucci and Gerd B. Müller Konrad Lorenz Institute for Evolution and Cognition Research Altenberg, Austria The topic More than 60 years have passed since the conceptual integration of several strands of evolutionary theory into what has come to be called the Modern Synthesis. Despite major advances since, in all methodological and disciplinary domains of biology, the Modern Synthesis framework has remained surprisingly static and is still regarded as the standard theoretical paradigm of evolutionary biology. But for some time now there have been calls for an expansion of the Synthesis framework through the integration of more recent achievements in evolutionary theory. The challenge for the present workshop is clear: How do we make sense, conceptually, of the astounding advances in biology since the 1940s, when the Modern Synthesis was taking shape? Not only have we witnessed the molecular revolution, from the discovery of the structure of DNA to the genomic era, we are also grappling with the increasing feeling – as reflected, for example, by the proliferation of “-omics” (proteomics, metabolomics, “interactomics,” and even “phenomics”) – that we just don't have the theoretical and analytical tools necessary to make sense of the bewildering diversity and complexity of living organisms. By contrast, in organismal biology, a number of new approaches have opened up new theoretical horizons, with new possibilities -
On the Interaction of Function, Constraint and Complexity in Evolutionary Systems
UNIVERSITY OF SOUTHAMPTON FACULTY OF PHYSICAL SCIENCES AND ENGINEERING ELECTRONICS AND COMPUTER SCIENCE Volume 1 of 1 On The Interaction Of Function, Constraint And Complexity In Evolutionary Systems by Adam Paul Davies Thesis for the degree of Doctor of Philosophy April 2014 UNIVERSITY OF SOUTHAMPTON ABSTRACT FACULTY OF PHYSICAL SCIENCES AND ENGINEERING Electronics and Computer Science Doctor of Philosophy ON THE INTERACTION OF FUNCTION, CONSTRAINT AND COMPLEXITY IN EVOLUTIONARY SYSTEMS by Adam Paul Davies Biological evolution contains a general trend of increasing complexity of the most complex organisms. But artificial evolution experiments based on the mechanisms described in the current theory generally fail to reproduce this trend; instead, they commonly show systematic trends of complexity minimisation. In this dissertation we seek evolutionary mechanisms that can explain these apparently conflicting observations. To achieve this we use a reverse engineering approach by building computational simulations of evolution. One highlighted problem is that even if complexity is beneficial, evolutionary simulations struggle with apparent roadblocks that prevent them from scaling to complexity. Another is that even without roadblocks, it is not clear what drives evolution to become more complex at all. With respect to the former, a key roadblock is how to evolve ‘irreducibly complex’ or ‘non- decomposable’ functions. Evidence from biological evolution suggests a common way to achieve this is by combining existing functions – termed ‘tinkering’ or ‘building block evolution’. But in simulation this approach generally fails to scale across multiple levels of organisation in a recursive manner. We provide a model that identifies the problem hindering recursive evolution as increasing ‘burden’ in the form of ‘internal selection’ as joined functions become more complex. -
Why Call It Developmental Bias When It Is Just Development? Isaac Salazar-Ciudad1,2,3
Salazar-Ciudad Biology Direct (2021) 16:3 https://doi.org/10.1186/s13062-020-00289-w OPINION Open Access Why call it developmental bias when it is just development? Isaac Salazar-Ciudad1,2,3 Abstract The concept of developmental constraints has been central to understand the role of development in morphological evolution. Developmental constraints are classically defined as biases imposed by development on the distribution of morphological variation. This opinion article argues that the concepts of developmental constraints and developmental biases do not accurately represent the role of development in evolution. The concept of developmental constraints was coined to oppose the view that natural selection is all-capable and to highlight the importance of development for understanding evolution. In the modern synthesis, natural selection was seen as the main factor determining the direction of morphological evolution. For that to be the case, morphological variation needs to be isotropic (i.e. equally possible in all directions). The proponents of the developmental constraint concept argued that development makes that some morphological variation is more likely than other (i.e. variation is not isotropic), and that, thus, development constraints evolution by precluding natural selection from being all-capable. This article adds to the idea that development is not compatible with the isotropic expectation by arguing that, in fact, it could not be otherwise: there is no actual reason to expect that development could lead to isotropic morphological variation. It is then argued that, since the isotropic expectation is untenable, the role of development in evolution should not be understood as a departure from such an expectation. -
Emanuele Serrelli Nathalie Gontier Editors Explanation, Interpretation
Interdisciplinary Evolution Research 2 Emanuele Serrelli Nathalie Gontier Editors Macroevolution Explanation, Interpretation and Evidence Interdisciplinary Evolution Research Volume 2 Series editors Nathalie Gontier, Lisbon, Portugal Olga Pombo, Lisbon, Portugal [email protected] About the Series The time when only biologists studied evolution has long since passed. Accepting evolution requires us to come to terms with the fact that everything that exists must be the outcome of evolutionary processes. Today, a wide variety of academic disciplines are therefore confronted with evolutionary problems, ranging from physics and medicine, to linguistics, anthropology and sociology. Solving evolutionary problems also necessitates an inter- and transdisciplinary approach, which is why the Modern Synthesis is currently extended to include drift theory, symbiogenesis, lateral gene transfer, hybridization, epigenetics and punctuated equilibria theory. The series Interdisciplinary Evolution Research aims to provide a scholarly platform for the growing demand to examine specific evolutionary problems from the perspectives of multiple disciplines. It does not adhere to one specific academic field, one specific school of thought, or one specific evolutionary theory. Rather, books in the series thematically analyze how a variety of evolutionary fields and evolutionary theories provide insights into specific, well-defined evolutionary problems of life and the socio-cultural domain. Editors-in-chief of the series are Nathalie Gontier and Olga Pombo. The -
Evolution—The Extended Synthesis
EVOLUTION—THE EXTENDED SYNTHESIS edited by Massimo Pigliucci and Gerd B. Müller The MIT Press Cambridge, Massachusetts London, England © 2010 Massachusetts Institute of Technology All rights reserved. No part of this book may be reproduced in any form by any electronic or mechanical means (including photocopying, recording, or information storage and retrieval) without permission in writing from the publisher. MIT Press books may be purchased at special quantity discounts for business or sales promotional use. For information, please email [email protected] or write to Special Sales Department, The MIT Press, 55 Hayward Street, Cambridge, MA 02142. This book was set in Times Roman by Toppan Best-set Premedia Limited. Printed and bound in the United States of America. Library of Congress Cataloging-in-Publication Data Evolution—the extended synthesis / edited by Massimo Pigliucci and Gerd B. Müller. p. cm. Includes bibliographical references and index. ISBN 978-0-262-51367-8 (pbk. : alk. paper) 1. Evolution (Biology) 2. Evolutionary genetics. 3. Developmental biology. I. Pigliucci, Massimo, 1964– II. Müller, Gerd B. QH366.2.E8627 2010 576.8—dc22 2009024587 10 9 8 7 6 5 4 3 2 1 Index Abir-Am, Pnina, 445 Average effects, 87 Abstract gene model, 102 Avital, E., 165 Accommodation, 298, 324, 366. See also Phenotypic and genetic Badyaev, A. V., 365 accommodation Baldwin effect, 219, 257–258, 366, 367, Activator-inhibitor systems, 290 371 Adams, Paul, 220 Baldwin, James Marc, 219, 366, 367, 371 Adaptation, 163–164, 425–427 Bat wings, 268 Adaptation and Natural Selection Beaks, fi nch, 271 (Williams), 84, 88 Behavioral inheritance, 187 Adaptive cell behaviors, 268 Benkemoun, L., 153–154 Adaptive landscapes/adaptive Biodiversity, areas for future research on topographies. -
Facilitated Variation: How Evolution Learns from Past Environments to Generalize to New Environments
Facilitated Variation: How Evolution Learns from Past Environments To Generalize to New Environments Merav Parter., Nadav Kashtan., Uri Alon* Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel Abstract One of the striking features of evolution is the appearance of novel structures in organisms. Recently, Kirschner and Gerhart have integrated discoveries in evolution, genetics, and developmental biology to form a theory of facilitated variation (FV). The key observation is that organisms are designed such that random genetic changes are channeled in phenotypic directions that are potentially useful. An open question is how FV spontaneously emerges during evolution. Here, we address this by means of computer simulations of two well-studied model systems, logic circuits and RNA secondary structure. We find that evolution of FV is enhanced in environments that change from time to time in a systematic way: the varying environments are made of the same set of subgoals but in different combinations. We find that organisms that evolve under such varying goals not only remember their history but also generalize to future environments, exhibiting high adaptability to novel goals. Rapid adaptation is seen to goals composed of the same subgoals in novel combinations, and to goals where one of the subgoals was never seen in the history of the organism. The mechanisms for such enhanced generation of novelty (generalization) are analyzed, as is the way that organisms store information in their genomes about their past environments. Elements of facilitated variation theory, such as weak regulatory linkage, modularity, and reduced pleiotropy of mutations, evolve spontaneously under these conditions. -
Life's Irreducible Structure—Part 2: Naturalistic Objections
Papers Life’s irreducible structure—Part 2: naturalistic objections Alex Williams In Part I of this article, I showed that autopoiesis (self-making) provides a compelling case for the intelligent design of life because all aspects of life lie beyond the reach of naturalistic explanation. Here in Part II the argument from autopoiesis is tested against commonly cited naturalistic objections to intelligent design. It comes through soundly intact, even strengthened because the opponents of design agree on the facts. They disagree on the historical inferences, but only intelligent design meets the criterion of an acceptable historical inference according to the Law of Cause and Effect. Naturalistic explanations of biological origins in the face of universally contradictory evidence depend upon faulty reasoning such as: (i) exclusion by definition and ridicule, (ii) assuming what must be proved, (iii) misinterpreting the scientific evidence, (iv) assigning unrealistic properties to the environment, and (v) misusing the concept of chance. In Polanyi’s terms, now is a very reasonable time to declare the impossibility of a naturalistic origin of life and accept that it was intelligently designed. In Part I of this article,1 I argued as follows: Note that this principle is not objective knowledge—we (i) Autopoiesis (self-making) is universal and therefore cannot visit all of time and space to verify it, so it is just a essential to life, so it is required at the beginning for convenient but necessary philosophical assumption. Most life to exist and is thus not the end product of some long people do not realize that this principle underlies all of naturalistic process. -
Better Living Through Evolution the Science of Novelty and Complexity in Life Forms by Daniel L
Browser-final 10/12/05 9:50 AM Page 22 formations, with insightful illustrations quirky and rambling, but somehow al- and particle/wave dualities. To get ready for provided for assistance. Those who stick ways intriguing. that day, aspiring theoretical physicists are with it are rewarded with a realistic peek How seriously should we take all this encouraged to buy a copy, for there’s much at physicists at play, seeing how they can talk of vibrating strings and parallel uni- inspiration to be found here. absorb a new concept and fashion poten- verses? Hypotheses in high-energy physics tial solutions to long-held mysteries. rise and fall on the Internet these days, Journalist and author Marcia Bartusiak is a visit- Warped Passages is more challenging than sometimes in a matter of hours. But I can ing professor in the Graduate Program in Science most popular science works, but highly imagine getting comfortable with branes Writing at the Massachusetts Institute of Technol- accessible to the physics-minded because and higher dimensions, as some of us are al- ogy. Her latest books are Einstein’s Unfinished of Randall’s lucid explanations. It’s ready accustomed to black holes, relativity, Symphony and Archives of the Universe. Better Living through Evolution The science of novelty and complexity in life forms by daniel l. hartl rançois jacob, one of the pio- are the sequences of neers in molecular biology, was in- such macromolecules terviewed a few years ago for an ed- similar, they are more ucational video now used in similar among more Harvard’s new undergraduate bi- closely related organ- Fology curriculum (Life Sciences 1b: “Ge- isms. -
Evodevo: an Ongoing Revolution?
philosophies Article EvoDevo: An Ongoing Revolution? Salvatore Ivan Amato Department of Cognitive Sciences, University of Messina, Via Concezione 8, 98121 Messina, Italy; [email protected] or [email protected] Received: 27 September 2020; Accepted: 2 November 2020; Published: 5 November 2020 Abstract: Since its appearance, Evolutionary Developmental Biology (EvoDevo) has been called an emerging research program, a new paradigm, a new interdisciplinary field, or even a revolution. Behind these formulas, there is the awareness that something is changing in biology. EvoDevo is characterized by a variety of accounts and by an expanding theoretical framework. From an epistemological point of view, what is the relationship between EvoDevo and previous biological tradition? Is EvoDevo the carrier of a new message about how to conceive evolution and development? Furthermore, is it necessary to rethink the way we look at both of these processes? EvoDevo represents the attempt to synthesize two logics, that of evolution and that of development, and the way we conceive one affects the other. This synthesis is far from being fulfilled, but an adequate theory of development may represent a further step towards this achievement. In this article, an epistemological analysis of EvoDevo is presented, with particular attention paid to the relations to the Extended Evolutionary Synthesis (EES) and the Standard Evolutionary Synthesis (SET). Keywords: evolutionary developmental biology; evolutionary extended synthesis; theory of development 1. Introduction: The House That Charles Built Evolutionary biology, as well as science in general, is characterized by a continuous genealogy of problems, i.e., “a kind of dialectical sequence” of problems that are “linked together in a continuous family tree” [1] (p. -
A Release from Developmental Bias Accelerates Morphological Diversification in Butterfly Eyespots
A release from developmental bias accelerates morphological diversification in butterfly eyespots Oskar Brattströma,b,1,2, Kwaku Aduse-Pokua,3, Erik van Bergena,4, Vernon Frenchc, and Paul M. Brakefielda,d aDepartment of Zoology, University of Cambridge, CB2 3EJ Cambridge, United Kingdom; bAfrican Butterfly Research Institute (ABRI), 0800 Nairobi, Kenya; cInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh, EH9 3JT, United Kingdom; and dCambridge University Museum of Zoology, CB2 3EJ Cambridge, United Kingdom Edited by Sean B. Carroll, Howard Hughes Medical Institute, College Park, MD, and approved September 8, 2020 (received for review April 28, 2020) Development can bias the independent evolution of traits sharing cells releasing a signal (e.g., a diffusible morphogen) that spreads ontogenetic pathways, making certain evolutionary changes less out to form a circular concentration gradient (21, 26). The sur- likely. The eyespots commonly found on butterfly wings each have rounding cells have sensitivity thresholds that direct the color of the concentric rings of differing colors, and these serially repeated pigmented scales that are formed. Below a certain signal threshold, pattern elements have been a focus for evo–devo research. In the the cells do not respond and will continue to develop into the butterfly family Nymphalidae, eyespots have been shown to func- normal base color of the wing, effectively forming the outer edge tion in startling or deflecting predators and to be involved in sex- of the eyespot. Despite two decades of research gradually unrav- ual selection. Previous work on a model species of Mycalesina eling the genetic basis of the developmental processes of butterfly butterfly, Bicyclus anynana, has provided insights into the devel- eyespots, the exact nature of the focal signal remains unknown. -
The Structure of Evolutionary Theory: Beyond Neo-Darwinism, Neo
1 2 3 The structure of evolutionary theory: Beyond Neo-Darwinism, 4 Neo-Lamarckism and biased historical narratives about the 5 Modern Synthesis 6 7 8 9 10 Erik I. Svensson 11 12 Evolutionary Ecology Unit, Department of Biology, Lund University, SE-223 62 Lund, 13 SWEDEN 14 15 Correspondence: [email protected] 16 17 18 19 1 20 Abstract 21 The last decades have seen frequent calls for a more extended evolutionary synthesis (EES) that 22 will supposedly overcome the limitations in the current evolutionary framework with its 23 intellectual roots in the Modern Synthesis (MS). Some radical critics even want to entirely 24 abandon the current evolutionary framework, claiming that the MS (often erroneously labelled 25 “Neo-Darwinism”) is outdated, and will soon be replaced by an entirely new framework, such 26 as the Third Way of Evolution (TWE). Such criticisms are not new, but have repeatedly re- 27 surfaced every decade since the formation of the MS, and were particularly articulated by 28 developmental biologist Conrad Waddington and paleontologist Stephen Jay Gould. 29 Waddington, Gould and later critics argued that the MS was too narrowly focused on genes and 30 natural selection, and that it ignored developmental processes, epigenetics, paleontology and 31 macroevolutionary phenomena. More recent critics partly recycle these old arguments and 32 argue that non-genetic inheritance, niche construction, phenotypic plasticity and developmental 33 bias necessitate major revision of evolutionary theory. Here I discuss these supposed 34 challenges, taking a historical perspective and tracing these arguments back to Waddington and 35 Gould. I dissect the old arguments by Waddington, Gould and more recent critics that the MS 36 was excessively gene centric and became increasingly “hardened” over time and narrowly 37 focused on natural selection.