Evolving the Concept of Homology
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Flatworms Phylum Platyhelminthes
Flatworms Phylum Platyhelminthes The flatworms include more than 13,000 species of free-living and parasitic species.There are 3 classes of flat- worms, the planarians, flukes and tapeworms. General Physical Traits (Anatomy): Flatworms are bilaterally symmetrical. This means that they can only be cut them length-wise to produce two mirror-image halves. They have a distinct right and left half. This is differ- ent from radially symmetrical animals, like the anemones, which can be cut anywhere top to bottom to get two similar halves. Flatworms have 3 tissue layers, compared to the 2 layers in sponges and cnidarians (jellyfishes, anemones and corals). They also have only one opening for food to enter and waste to leave, like the sponges and cnidarians. This is called a “sac” body plan. Planarian (class Tubellaria) Habitat: They live mostly in saltwater (marine) habitats, but are also found in freshwater. Habits: They are free-living flatworms (not parasites). Physical Traits (Anatomy): Planarians are small - less than a centimeter long. They have a head, brain and sense organs. This is called “cephalization.” The sense organs – called eyespots – look like eyes and are sensitive to light changes, but are not like human eyes. They are made up of simple nerve cells that respond to stimuli, like light. When many nerve cells are gathered in one place, they are called a “ganglion,” so the two eyespots are actually ganglia. They also have points on either side of the head that look a bit like ears, called “sensory lobes” or auricles. They do not hear, but can sense food. -
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B. M ü ller, G ü nter P. Wagner, and Werner Callebaut, editors The Evolution of Cognition , edited by Cecilia Heyes and Ludwig Huber, 2000 Origination of Organismal Form: Beyond the Gene in Development and Evolutionary Biology , edited by Gerd B. M ü ller and Stuart A. Newman, 2003 Environment, Development, and Evolution: Toward a Synthesis , edited by Brian K. Hall, Roy D. Pearson, and Gerd B. M ü ller, 2004 Evolution of Communication Systems: A Comparative Approach , edited by D. Kimbrough Oller and Ulrike Griebel, 2004 Modularity: Understanding the Development and Evolution of Natural Complex Systems , edited by Werner Callebaut and Diego Rasskin-Gutman, 2005 Compositional Evolution: The Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution , by Richard A. Watson, 2006 Biological Emergences: Evolution by Natural Experiment , by Robert G. B. Reid, 2007 Modeling Biology: Structure, Behaviors, Evolution , edited by Manfred D. Laubichler and Gerd B. M ü ller, 2007 Evolution of Communicative Flexibility: Complexity, Creativity, and Adaptability in Human and Animal Communication , edited by Kimbrough D. Oller and Ulrike Griebel, 2008 Functions in Biological and Artifi cial Worlds: Comparative Philosophical Perspectives , edited by Ulrich Krohs and Peter Kroes, 2009 Cognitive Biology: Evolutionary and Developmental Perspectives on Mind, Brain, and Behavior , edited by Luca Tommasi, Mary A. Peterson, and Lynn Nadel, 2009 Innovation in Cultural Systems: Contributions from Evolutionary Anthropology , edited by Michael J. O ’ Brien and Stephen J. Shennan, 2010 The Major Transitions in Evolution Revisited , edited by Brett Calcott and Kim Sterelny, 2011 Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by Snait B. -
Evolution by Natural Selection, Formulated Independently by Charles Darwin and Alfred Russel Wallace
UNIT 4 EVOLUTIONARY PATT EVOLUTIONARY E RNS AND PROC E SS E Evolution by Natural S 22 Selection Natural selection In this chapter you will learn that explains how Evolution is one of the most populations become important ideas in modern biology well suited to their environments over time. The shape and by reviewing by asking by applying coloration of leafy sea The rise of What is the evidence for evolution? Evolution in action: dragons (a fish closely evolutionary thought two case studies related to seahorses) 22.1 22.4 are heritable traits that with regard to help them to hide from predators. The pattern of evolution: The process of species have changed evolution by natural and are related 22.2 selection 22.3 keeping in mind Common myths about natural selection and adaptation 22.5 his chapter is about one of the great ideas in science: the theory of evolution by natural selection, formulated independently by Charles Darwin and Alfred Russel Wallace. The theory explains how T populations—individuals of the same species that live in the same area at the same time—have come to be adapted to environments ranging from arctic tundra to tropical wet forest. It revealed one of the five key attributes of life: Populations of organisms evolve. In other words, the heritable characteris- This chapter is part of the tics of populations change over time (Chapter 1). Big Picture. See how on Evolution by natural selection is one of the best supported and most important theories in the history pages 516–517. of scientific research. -
Many but Not All Lineage-Specific Genes Can Be Explained by Homology Detection Failure
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.27.968420; this version posted April 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Many but not all lineage-specific genes can be explained by homology detection failure Caroline M. Weisman1, Andrew W. Murray1, Sean R. Eddy1,2,3 1 Department of Molecular & Cellular Biology, 2 Howard Hughes Medical Institute, 3 John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge MA, USA Abstract Genes for which homologs can be detected only in a limited group of evolutionarily related species, called “lineage-specific genes,” are pervasive: essentially every lineage has them, and they often comprise a sizable fraction of the group’s total genes. Lineage-specific genes are often interpreted as “novel” genes, representing genetic novelty born anew within that lineage. Here, we develop a simple method to test an alternative null hypothesis: that lineage-specific genes do have homologs outside of the lineage that, even while evolving at a constant rate in a novelty-free manner, have merely become undetectable by search algorithms used to infer homology. We show that this null hypothesis is sufficient to explain the lack of detected homologs of a large number of lineage-specific genes in fungi and insects. However, we also find that a minority of lineage-specific genes in both clades are not well-explained by this novelty- free model. -
Phylum Chordata
Phylum Chordata 48,000 species very diverse phylum but still more unity in major characteristics than in most other phyla most advanced phylum of animal kingdom one to which we belong along with fish, amphibians reptiles, birds and other mammals some of the largest or most massive animals true coelom 4 major identifying characteristics: 1. Notochord flexible rodlike structure enclosed by a fibrous sheath extends the length of the body in larva and/or adult provides basic support and serves as main axis for muscle attachments to permit “fishlike” undulatory movements first part of skeleton to form in embryo in primitive chordates the notochord persists through life Animals: Chordates & Introduction to Vertebrates; Ziser Lecture Notes, 2006 1 in most chordates the notochord is replaced by a vertebral column of bone remnants of the notochord remain as “intervertebral discs” 2. Dorsal tubular nerve cord in most invert groups; nerve cord is ventral & paired in chordates the nerve cord is a single dorsal hollow nerve cord front end usually enlarged to form brain 3. Pharyngeal (gill) slits slit-like opening sleading from throat to outside first evolved as a filter feeding apparatus still used by some to filter water for food in others as gills in some groups they are only found in embryo and lost as adults 4. endostyle or thyroid gland specific kind of tissue found only in chordates was originally part of the feeding apparatus endostyle secretes mucus and traps food inside the pharyngeal cavity eg. lamprey larva in most chordates the same tissue has become an endocrine Animals: Chordates & Introduction to Vertebrates; Ziser Lecture Notes, 2006 2 gland in the neck region that helps control metabolism 5. -
Animal Phylum Poster Porifera
Phylum PORIFERA CNIDARIA PLATYHELMINTHES ANNELIDA MOLLUSCA ECHINODERMATA ARTHROPODA CHORDATA Hexactinellida -- glass (siliceous) Anthozoa -- corals and sea Turbellaria -- free-living or symbiotic Polychaetes -- segmented Gastopods -- snails and slugs Asteroidea -- starfish Trilobitomorpha -- tribolites (extinct) Urochordata -- tunicates Groups sponges anemones flatworms (Dugusia) bristleworms Bivalves -- clams, scallops, mussels Echinoidea -- sea urchins, sand Chelicerata Cephalochordata -- lancelets (organisms studied in detail in Demospongia -- spongin or Hydrazoa -- hydras, some corals Trematoda -- flukes (parasitic) Oligochaetes -- earthworms (Lumbricus) Cephalopods -- squid, octopus, dollars Arachnida -- spiders, scorpions Mixini -- hagfish siliceous sponges Xiphosura -- horseshoe crabs Bio1AL are underlined) Cubozoa -- box jellyfish, sea wasps Cestoda -- tapeworms (parasitic) Hirudinea -- leeches nautilus Holothuroidea -- sea cucumbers Petromyzontida -- lamprey Mandibulata Calcarea -- calcareous sponges Scyphozoa -- jellyfish, sea nettles Monogenea -- parasitic flatworms Polyplacophora -- chitons Ophiuroidea -- brittle stars Chondrichtyes -- sharks, skates Crustacea -- crustaceans (shrimp, crayfish Scleropongiae -- coralline or Crinoidea -- sea lily, feather stars Actinipterygia -- ray-finned fish tropical reef sponges Hexapoda -- insects (cockroach, fruit fly) Sarcopterygia -- lobed-finned fish Myriapoda Amphibia (frog, newt) Chilopoda -- centipedes Diplopoda -- millipedes Reptilia (snake, turtle) Aves (chicken, hummingbird) Mammalia -
Echinoderms for Dummies Colwyn Sleep Echinoderm Classification and Examples
ECHINODERMS FOR DUMMIES COLWYN SLEEP ECHINODERM CLASSIFICATION AND EXAMPLES What exactly is an Echinoderm? Echinoderms (or “Echinodermata”) are a group of animals which exist only in a marine (ocean) environment. Their name comes from the Greek word for "spiny skin". They inhabit a diverse range of marine habitats and are found on the sea floor from the intertidal zone to great ocean depths. In the following slides we will explore echinoderms and look into their body systems and structures more closely. A FEW EXAMPLES OF ECHINODERMS Sea star Kingdom: Animalia Phylum: Echinodermata Class: Asteroidea Feather Star Kingdom: Animalia Phylum: Echinodermata Subphylum: Crinozoa Class: Crinoidea Probably one of the best known echinoderms This lesser-known star, the feather star gains is the easily recognized sea star. The its name from its featherlike arms, which it echinoderm phylum contains many more uses to swim through the water. Like all species, in fact there are around 7000 known echinoderms, they are “Deuterostomes.” echinoderms. Later, we will investigate the This means that during their embryonic sea star and it’s classification as an development the first embryonic opening echinoderm in greater detail. becomes the anus and the second becomes the mouth. Because of this, biologists believe that echinoderms are more evolutionarily advanced than some of the other animals. A FEW MORE… Sea cucumber Kingdom: Animalia Phylum: Echinodermata Class: Holothuroidea Sea Urchin Kingdom: Animalia Phylum: Echinodermata Class: Echinoidea Related to Jabba the Hutt in appearance Like other echinoderms, the sea urchin has only, the sea cucumber is actually another radial symmetry. Its pointed spines offer example of an echinoderm. -
Introduction to Phylum Chordata
Unifying Themes 1. Chordate evolution is a history of innovations that is built upon major invertebrate traits •bilateral symmetry •cephalization •segmentation •coelom or "gut" tube 2. Chordate evolution is marked by physical and behavioral specializations • For example the forelimb of mammals has a wide range of structural variation, specialized by natural selection 3. Evolutionary innovations and specializations led to adaptive radiations - the development of a variety of forms from a single ancestral group Characteristics of the Chordates 1. Notochord 2. dorsal hollow nerve cord 3. pharyngeal gill slits 4. postanal tail 5. endostyle Characteristics of the Chordates Notochord •stiff, flexible rod, provides internal support • Remains throughout the life of most invertebrate chordates • only in the embryos of vertebrate chordates Characteristics of the Chordates cont. Dorsal Hollow Nerve Cord (Spinal Cord) •fluid-filled tube of nerve tissue, runs the length of the animal, just dorsal to the notochord • Present in chordates throughout embryonic and adult life Characteristics of the Chordates cont. Pharyngeal gill slits • Pairs of opening through the pharynx • Invertebrate chordates use them to filter food •In fishes the gill sits develop into true gills • In reptiles, birds, and mammals the gill slits are vestiges (occurring only in the embryo) Characteristics of the Chordates cont. Endostyle • mucous secreting structure found in the pharynx floor (traps small food particles) Characteristics of the Chordates cont. Postanal Tail • works with muscles (myomeres) & notochord to provide motility & stability • Aids in propulsion in nonvertebrates & fish but vestigial in later lineages SubPhylum Urochordata Ex: tunicates or sea squirts • Sessile as adults, but motile during the larval stages • Possess all 5 chordate characteristics as larvae • Settle head first on hard substrates and undergo a dramatic metamorphosis • tail, notochord, muscle segments, and nerve cord disappear SubPhylum Urochordata cont. -
Convergent Evolution
Exploring the KU Natural History Museum Convergent Evolution Target Audience: Middle school and above Differentiated Instruction Summary Strategy Levels Content/Process/Product Grouping(s) Learning modalities Whole group • Level 1 – Visual (spatial) Small groups Process Cubing Level 2 – Kinesthetic (physical) Peer partners • Product • Level 3 – Verbal (linguistic) Homogeneous Heterogeneous * Varied grouping options can be used for this activity, depending on student needs and chaperone ability. Objectives: Explore examples of convergent evolution in vertebrates. Pre-assessment/Prior Knowledge: Prior to their visit, students should be familiar with the idea of convergent evolution, overall evolutionary relationships/classification of vertebrate groups and basic anatomy of those groups. Activity Description: Students explore the idea of convergent evolution through museum exhibits through different learning modalities. Materials Needed: • Student o Cubes (three levels, see attached) o Paper and pencils (alternatively you could use flipchart paper and markers, whiteboards and dry erase markers) o Optional (cell phones or other recording device for visual or kinesthetic levels) Note: Format to record/present findings determined by individual teacher. Provide clear instructions about expectations for documenting participation, particularly for verbal/spatial and body/kinesthetic levels (e.g. stage direction, audio/video recording). • Teacher o Content Outline o Cube labels o Cube template Content: Convergence Overview Convergent evolution refers to the similarities in biological traits that arise independently in organisms that are not closely related, e.g. wings in birds, bats and insects. Similarity among organisms and their structures that was not inherited from a common ancestor is considered to be homoplasy. This can be contrasted with homology, which refers to similarity of traits due to common ancestry. -
Systematic Morphology of Fishes in the Early 21St Century
Copeia 103, No. 4, 2015, 858–873 When Tradition Meets Technology: Systematic Morphology of Fishes in the Early 21st Century Eric J. Hilton1, Nalani K. Schnell2, and Peter Konstantinidis1 Many of the primary groups of fishes currently recognized have been established through an iterative process of anatomical study and comparison of fishes that has spanned a time period approaching 500 years. In this paper we give a brief history of the systematic morphology of fishes, focusing on some of the individuals and their works from which we derive our own inspiration. We further discuss what is possible at this point in history in the anatomical study of fishes and speculate on the future of morphology used in the systematics of fishes. Beyond the collection of facts about the anatomy of fishes, morphology remains extremely relevant in the age of molecular data for at least three broad reasons: 1) new techniques for the preparation of specimens allow new data sources to be broadly compared; 2) past morphological analyses, as well as new ideas about interrelationships of fishes (based on both morphological and molecular data) provide rich sources of hypotheses to test with new morphological investigations; and 3) the use of morphological data is not limited to understanding phylogeny and evolution of fishes, but rather is of broad utility to understanding the general biology (including phenotypic adaptation, evolution, ecology, and conservation biology) of fishes. Although in some ways morphology struggles to compete with the lure of molecular data for systematic research, we see the anatomical study of fishes entering into a new and exciting phase of its history because of recent technological and methodological innovations. -
Comparative Anatomy and Functional Morphology University of California at Berkeley Department of Integrative Biology (5 Units)
Comparative Anatomy and Functional Morphology University of California at Berkeley Department of Integrative Biology (5 Units) Course Description: This course is an in-depth look at the biology of form and function. We will examine vertebrate anatomy to understand how structures develop, how they have evolved, and how they interact with one another to allow animals to live in a variety of environments. We will study the integration of the skeletal, muscular, nervous, vascular, respiratory, digestive, endocrine, and urogenital systems to explore the historical and present diversity of vertebrate animals. Format: This course will include lecture, discussion, and laboratory sessions. Lectures will focus primarily on broad concepts and ideas. Discussion sections will emphasize how to both read and analyze primary scientific literature. Laboratory sessions will allow students to physically explore the morphologies of a diversity of taxa and will include museum specimens as well as dissections of whole animals. Lecture: Monday, Tuesday, Wednesday, and Thursday, 9:30-11:00a.m. Discussion: Monday and Thursday, 11:00a.m. or 12:00p.m. Laboratory: Monday, Tuesday, Wednesday, and Thursday, 2:00-5:00p.m. All students must take lectures, discussion sections, and laboratory sections concurrently. Attendance of all sections is required. Goals: 1. A comparative approach will allow students to gain experience in identifying similarities and differences among taxa and further their understanding of how both evolutionary and environmental contexts influence the morphology and function. 2. Students will improve their ability to ask questions and answer them using scientific methodology. 3. Students will gain factual knowledge of terms and concepts regarding vertebrate anatomy and functional morphology. -
Brain-Size Evolution and Sociality in Carnivora
Brain-size evolution and sociality in Carnivora John A. Finarellia,b,1 and John J. Flynnc aDepartment of Geological Sciences, University of Michigan, 2534 C.C. Little Building, 1100 North University Avenue, Ann Arbor, MI 48109; bMuseum of Paleontology, University of Michigan, 1529 Ruthven Museum, 1109 Geddes Road, Ann Arbor, MI 48109; and cDivision of Paleontology and Richard Gilder Graduate School, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024 Edited by Alan Walker, Pennsylvania State University, University Park, PA, and approved April 22, 2009 (received for review February 16, 2009) Increased encephalization, or larger brain volume relative to body develop a comprehensive view of the evolutionary history of mass, is a repeated theme in vertebrate evolution. Here we present encephalization across 289 terrestrial species (including 125 an extensive sampling of relative brain sizes in fossil and extant extinct species) of Carnivora, providing an extensive sampling of taxa in the mammalian order Carnivora (cats, dogs, bears, weasels, fossil and living taxa for both major subclades: Caniformia and and their relatives). By using Akaike Information Criterion model Feliformia. selection and endocranial volume and body mass data for 289 species (including 125 fossil taxa), we document clade-specific Results evolutionary transformations in encephalization allometries. Akaike Information Criterion (AIC) model selection recovered These evolutionary transformations include multiple independent 4 optimal models (OM) within 2 log-likelihood units of the encephalization increases and decreases in addition to a remark- highest score (Table 1). There is broad agreement among the ably static basal Carnivora allometry that characterizes much of the OM with differences primarily in estimates of allometric slopes.