Western Australian Orchids
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Australian Endangered Orchid, Microtis Angusii: an Evaluation of the Utility of Dna Barcoding
Lankesteriana International Journal on Orchidology ISSN: 1409-3871 [email protected] Universidad de Costa Rica Costa Rica FLANAGAN, NICOLA S.; PEAKALL, ROD; CLEMENTS, MARK A.; OTERO, J. TUPAC MOLECULAR GENETIC DIAGNOSIS OF THE ‘TAXONOMICALLY DIFFICULT’ AUSTRALIAN ENDANGERED ORCHID, MICROTIS ANGUSII: AN EVALUATION OF THE UTILITY OF DNA BARCODING. Lankesteriana International Journal on Orchidology, vol. 7, núm. 1-2, marzo, 2007, pp. 196-198 Universidad de Costa Rica Cartago, Costa Rica Available in: http://www.redalyc.org/articulo.oa?id=44339813040 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative LANKESTERIANA 7(1-2): 196-198. 2007. MOLECULAR GENETIC DIAGNOSIS OF THE ‘TAXONOMICALLY DIFFICULT’ AUSTRALIAN ENDANGERED ORCHID, MICROTIS ANGUSII: AN EVALUATION OF THE UTILITY OF DNA BARCODING. 1,3,5 1 2 2, 4 NICOLA S. FLANAGAN , ROD PEAKALL , MARK A. CLEMENTS & J. TUPAC OTERO 1 School of Botany and Zoology, The Australian National University, Canberra, ACT 0200, Australia. 2 Centre for Plant Biodiversity Research, GPO Box 1600 Canberra ACT 2601, Australia. 3 Genetics & Biotechnology, University College Cork, Ireland 4 Dept. de Ciencias Agricolas, Universidad Nacional de Colombia, Palmira, Valle, Colombia 5 Author for correspondence: [email protected] KEY WORDS: Species diagnosis, barcoding, practical outcomes, clonality, Internal Transcribed Sequences (ITS), Single Nucleotide Polymorphisms (SNPs) As species are the common currency for conserva- to the endangered Australian orchid, Microtis angusii tion efforts, their accurate description is essential for (Flanagan et al. -
Vegetation Monitoring – Swan Coastal Plain
2007 Vegetation Monitoring – Swan Coastal Plain 2007 Vegetation Monitoring - Swan Coastal Plain (Bunbury, Busselton-Capel Groundwater Areas) A Report to the DoW R. Loomes, J. Wilson & R. Froend Centre for Ecosystem Management ECU Joondalup CEM report no. 2007- 15 February 2008 Centre for Ecosystem Management 1 2007 Vegetation Monitoring – Swan Coastal Plain Table of Contents SUMMARY .................................................................................................................................................. 3 PROJECT CONTEXT ................................................................................................................................4 PROPOSED MONITORING PROGRAM................................................................................................ 5 BACKGROUND............................................................................................................................................ 5 MONITORING OBJECTIVES AND HYPOTHESES ............................................................................................ 6 PARAMETERS ........................................................................................................................................... 10 MONITORING FREQUENCY AND APPROACH ............................................................................................. 15 Transect establishment ....................................................................................................................... 15 Baseline Monitoring .......................................................................................................................... -
Lankesteriana IV
LANKESTERIANA 7(1-2): 229-239. 2007. DENSITY INDUCED RATES OF POLLINARIA REMOVAL AND DEPOSITION IN THE PURPLE ENAMEL-ORCHID, ELYTHRANTHERA BRUNONIS (ENDL.) A.S. GEORGE 1,10 2 3 RAYMOND L. TREMBLAY , RICHARD M. BATEMAN , ANDREW P. B ROWN , 4 5 6 7 MARC HACHADOURIAN , MICHAEL J. HUTCHINGS , SHELAGH KELL , HAROLD KOOPOWITZ , 8 9 CARLOS LEHNEBACH & DENNIS WIGHAM 1 Department of Biology, 100 Carr. 908, University of Puerto Rico – Humacao campus, Humacao, Puerto Rico, 00791-4300, USA 2 Natural History Museum, Cromwell Road, London SW7 5BD, UK 3 Department of Environment and Conservation, Species and Communities Branch, Locked Bag 104 Bentley Delivery Centre WA 6893, Australia 4 New York Botanic Garden, 112 Alpine Terrace, Hilldale, NJ 00642, USA 5 School of Life Sciences, University of Sussex, Falmer, Brighton, Sussex, BN1 9QG, UK 6 IUCN/SSC Orchid Specialist Group Secretariat, 36 Broad Street, Lyme Regis, Dorset, DT7 3QF, UK 7 University of California, Ecology and Evolutionary Biology, Irvine, CA 92697, USA 8 Massey University, Allan Wilson Center for Molecular Ecology and Evolution 9 Smithsonian Institution, Smithsonian Environmental Research Center, Box 28, Edgewater, MD 21037, USA 10 Author for correspondence: [email protected] RESUMEN. La distribución y densidad de los individuos dentro de las poblaciones de plantas pueden afectar el éxito reproductivo de sus integrantes. Luego de describir la filogenia de las orquideas del grupo de las Caladeniideas y su biología reproductiva, evaluamos el efecto de la densidad en el éxito reproductivo de la orquídea terrestre Elythranthera brunonis, endémica de Australia del Oeste. El éxito reproductivo de esta orquídea, medido como la deposición y remoción de polinios, fue evaluado. -
Orchid Historical Biogeography, Diversification, Antarctica and The
Journal of Biogeography (J. Biogeogr.) (2016) ORIGINAL Orchid historical biogeography, ARTICLE diversification, Antarctica and the paradox of orchid dispersal Thomas J. Givnish1*, Daniel Spalink1, Mercedes Ames1, Stephanie P. Lyon1, Steven J. Hunter1, Alejandro Zuluaga1,2, Alfonso Doucette1, Giovanny Giraldo Caro1, James McDaniel1, Mark A. Clements3, Mary T. K. Arroyo4, Lorena Endara5, Ricardo Kriebel1, Norris H. Williams5 and Kenneth M. Cameron1 1Department of Botany, University of ABSTRACT Wisconsin-Madison, Madison, WI 53706, Aim Orchidaceae is the most species-rich angiosperm family and has one of USA, 2Departamento de Biologıa, the broadest distributions. Until now, the lack of a well-resolved phylogeny has Universidad del Valle, Cali, Colombia, 3Centre for Australian National Biodiversity prevented analyses of orchid historical biogeography. In this study, we use such Research, Canberra, ACT 2601, Australia, a phylogeny to estimate the geographical spread of orchids, evaluate the impor- 4Institute of Ecology and Biodiversity, tance of different regions in their diversification and assess the role of long-dis- Facultad de Ciencias, Universidad de Chile, tance dispersal (LDD) in generating orchid diversity. 5 Santiago, Chile, Department of Biology, Location Global. University of Florida, Gainesville, FL 32611, USA Methods Analyses use a phylogeny including species representing all five orchid subfamilies and almost all tribes and subtribes, calibrated against 17 angiosperm fossils. We estimated historical biogeography and assessed the -
Redalyc.ARE OUR ORCHIDS SAFE DOWN UNDER?
Lankesteriana International Journal on Orchidology ISSN: 1409-3871 [email protected] Universidad de Costa Rica Costa Rica BACKHOUSE, GARY N. ARE OUR ORCHIDS SAFE DOWN UNDER? A NATIONAL ASSESSMENT OF THREATENED ORCHIDS IN AUSTRALIA Lankesteriana International Journal on Orchidology, vol. 7, núm. 1-2, marzo, 2007, pp. 28- 43 Universidad de Costa Rica Cartago, Costa Rica Available in: http://www.redalyc.org/articulo.oa?id=44339813005 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative LANKESTERIANA 7(1-2): 28-43. 2007. ARE OUR ORCHIDS SAFE DOWN UNDER? A NATIONAL ASSESSMENT OF THREATENED ORCHIDS IN AUSTRALIA GARY N. BACKHOUSE Biodiversity and Ecosystem Services Division, Department of Sustainability and Environment 8 Nicholson Street, East Melbourne, Victoria 3002 Australia [email protected] KEY WORDS:threatened orchids Australia conservation status Introduction Many orchid species are included in this list. This paper examines the listing process for threatened Australia has about 1700 species of orchids, com- orchids in Australia, compares regional and national prising about 1300 named species in about 190 gen- lists of threatened orchids, and provides recommen- era, plus at least 400 undescribed species (Jones dations for improving the process of listing regionally 2006, pers. comm.). About 1400 species (82%) are and nationally threatened orchids. geophytes, almost all deciduous, seasonal species, while 300 species (18%) are evergreen epiphytes Methods and/or lithophytes. At least 95% of this orchid flora is endemic to Australia. -
25. MICROTIS R. Brown, Prodr. 320. 1810. 葱叶兰属 Cong Ye Lan Shu Chen Xinqi (陈心启 Chen Sing-Chi); Stephan W
Flora of China 25: 89–90. 2009. 25. MICROTIS R. Brown, Prodr. 320. 1810. 葱叶兰属 cong ye lan shu Chen Xinqi (陈心启 Chen Sing-chi); Stephan W. Gale, Phillip J. Cribb Herbs, terrestrial, small. Tubers subglobose, to 1 cm in diam., fleshy; roots wiry, filamentous. Stem erect, slender, with mem- branous cataphylls at nodes. Leaf basal, solitary, cylindric, slender, hollow, glabrous, basally amplexicaul, sessile. Inflorescence ter- minal, racemose, with several to many flowers, emerging through opening in leaf; floral bracts small, sheathing. Flowers resupinate, small; ovary ribbed, glabrous; pedicel extremely short. Dorsal sepal free, erect, similar to but larger than lateral sepals, cucullate over column; lateral sepals free, spreading. Petals free, smaller than sepals; lip adnate to base of column, usually with basal callus adaxially, entire or sometimes apically emarginate, spurless. Column very short, fleshy, with 2 wings apically or laterally; anther erect, 2-locular; stigma entire, quadrate; pollinia 4, in 2 pairs, granular-farinaceous, with short caudicle and viscidium. Capsule erect. About 14 species: mainly in Australia and New Zealand, with one species extending to tropical and subtropical Asia; one species in China. 1. Microtis unifolia (G. Forster) H. G. Reichenbach, Beitr. Syst. Pflanzenk. 62. 1871. 葱叶兰 cong ye lan Ophrys unifolia G. Forster, Fl. Ins. Austr. 59. 1786; Micro- tis formosana Schlechter; M. parviflora R. Brown. Plants 15–30 cm tall. Tuber small, 4–7 × 3–6 mm. Leaf erect or suberect, 16–33 × 0.2–0.3 cm, adaxially channeled. In- florescence usually more than 10-flowered, emergent through opening in lower half of leaf; rachis 2.5–5 cm; floral bracts nar- rowly ovate-lanceolate, 1–2 mm. -
Arid Land Microtis (Orchidaceae) in Western Australia with the Description of Three New Taxa
J. Adelaide Bot. Gard. 17: 119-125 (1996) ARID LAND MICROTIS (ORCHIDACEAE) IN WESTERN AUSTRALIA WITH THE DESCRIPTION OF THREE NEW TAXA R.J. Bates cl- State Herbarium of South Australia, Botanic Gardens of Adelaide, North Terrace, Adelaide, South Australia 5000 Abstract Microns eremaea, M graniticola and M media R.Br. ssp. eremicola are described as new; illustrations are provided together with a distribution map. Discussion of variation within each species and suspected hybrids is included. Introduction Bates (1984) recorded seven species of Microtis from Western Australia. Only M unifolia sensu lato was thought to occur in the dry inland. Later, Bates (1990) recognised ten Western Australian Microtis and identified three inland species which were treated as M media R.Br., M parvifolia R.Br. and M unifolia (Forst f.)Reichb.f. sens. lar. The type forms of M media, M parviflora and M unifolia are all plants of high rainfall coastal regions; M media ssp. media occurring in south-western Australia, M parviflora in eastern Australia and M unifolia in New Zealand. In view of the very different habitat requirements of plants from semi-arid Western Australia is seemed most unlikely they were the same taxa. The author spent time collecting Microtis in Western Australia in 1990 and after re-examining herbarium collections from PERTH and AD concluded that several undescribed taxa were involved, the three best known being here described as new. New taxa 1. Microtis eremaea R. Bates, sp. nov. M parviflora sensu Bates, J. Adelaide Bot. Gard. 13 (1990) 57. A M pauciflorae spicibus floralibus rigidioribus, bracteis floralibus longioribus, sepalis dorsalis apiculo erecto, labellique marginibus crenatis differt. -
ACT, Australian Capital Territory
Biodiversity Summary for NRM Regions Species List What is the summary for and where does it come from? This list has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. The list was produced using the AustralianAustralian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. For each family of plant and animal covered by ANHAT (Appendix 1), this document gives the number of species in the country and how many of them are found in the region. It also identifies species listed as Vulnerable, Critically Endangered, Endangered or Conservation Dependent under the EPBC Act. A biodiversity summary for this region is also available. For more information please see: www.environment.gov.au/heritage/anhat/index.html Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. Groups notnot yet yet covered covered in inANHAT ANHAT are notnot included included in in the the list. list. • The data used come from authoritative sources, but they are not perfect. All species names have been confirmed as valid species names, but it is not possible to confirm all species locations. -
Ingleside –Angus's Onion Orchid (Microtis Angusii) – Survey Results
Ingleside –Angus’s Onion Orchid (Microtis angusii) – Survey Results Dr Steven Ward Document Set ID: 5284144 Version: 1, Version Date: 09/12/2015 Background • Cryptic (hard to detect) plant • Listed as Endangered Document Set ID: 5284144 Version: 1, Version Date: 09/12/2015 Background • Need to survey when flowering (Sep - Oct) • Genetic testing to confirm identification • Often occurs in roadside edge habitat • Roads and Maritime results used to generate a habitat model Document Set ID: 5284144 Version: 1, Version Date: 09/12/2015 Habitat Model Document Set ID: 5284144 Version: 1, Version Date: 09/12/2015 Methods • Known population checked every 2 weeks • Survey done over two weeks (Sep - Oct) • Two teams of 2 ecologists = 40 person days • Habitat of modelled higher potential targeted • GPS points taken when located • Number of plants counted • Small piece(s) of leaf sample taken and sent off for genetic analysis • Also surveyed adjoining National Parks (map on next slide) Document Set ID: 5284144 Version: 1, Version Date: 09/12/2015 Field Survey Sites Document Set ID: 5284144 Version: 1, Version Date: 09/12/2015 Results - Field • Field identifications of four (4) Microtis species: – Microtis angusii - low numbers (Endangered) – Microtis unifolia – high numbers – Microtis parviflora – high numbers – Microtis rara – low numbers • Some large populations of Microtis, generally in the road corridors – map on next slide. Document Set ID: 5284144 Version: 1, Version Date: 09/12/2015 Microtis Map Document Set ID: 5284144 (all species) Version: 1, Version Date: 09/12/2015 Results – Genetic Testing 1 = Estimate for two large • The key genetic results were : populations of Microtis parviflora – Zero Microtis unifolia (field = high no’s) – Many Microtis angusii (field = low no’s) Document Set ID: 5284144 Version: 1, Version Date: 09/12/2015 Why the Difference? • Two possibilities : 1. -
Branch Circus Flora and Fauna Survey PDF Document
FLORA AND VEGETATION SURVEY Branch Circus and Hammond Road, Success Prepared by: Prepared for: RPS MUNTOC PTY LTD AND 290 Churchill Avenue, SUBIACO WA 6008 SILVERSTONE ASSET PTY LTD PO Box 465, SUBIACO WA 6904 C/O Koltasz Smith T: 618 9382 4744 PO Box 127 F: 618 9382 1177 E: [email protected] BURSWOOD WA 6100 W: www.rpsgroup.com.au Report No: L07263 Version/Date: Rev 0, June 2008 RPS Environment Pty Ltd (ABN 45 108 680 977) Document Set ID: 5546761 Version: 1, Version Date: 31/01/2017 Flora and Vegetation Survey Branch Circus and Hammond Road, Success Document Status Review Format RPS Release Issue Version Purpose of Document Orig Review Date Review Approval Date Draft A Draft For Internal Review KelMcC VanYeo 30.04.08 Draft B Draft For Client Review VanYeo KarGod 14.05.08 SN 30.05.08 Rev 0 Final for Issue VanYeo 10.06.08 DC 12.06.08 B. Hollyock 13.06.08 Disclaimer This document is and shall remain the property of RPS. The document may only be used for the purposes for which it was commissioned and in accordance with the Terms of Engagement for the commission. Unauthorised copying or use of this document in any form whatsoever is prohibited. L07263, Rev 0, June 2008 DOCUMENT STATUS / DISCLAIMER Document Set ID: 5546761 Version: 1, Version Date: 31/01/2017 Flora and Vegetation Survey Branch Circus and Hammond Road, Success EXECUTIVE SUMMARY Flora A total of 229 taxa were recorded from the survey area, of which 155 or 68% were native. -
Australian Orchidaceae: Genera and Species (12/1/2004)
AUSTRALIAN ORCHID NAME INDEX (21/1/2008) by Mark A. Clements Centre for Plant Biodiversity Research/Australian National Herbarium GPO Box 1600 Canberra ACT 2601 Australia Corresponding author: [email protected] INTRODUCTION The Australian Orchid Name Index (AONI) provides the currently accepted scientific names, together with their synonyms, of all Australian orchids including those in external territories. The appropriate scientific name for each orchid taxon is based on data published in the scientific or historical literature, and/or from study of the relevant type specimens or illustrations and study of taxa as herbarium specimens, in the field or in the living state. Structure of the index: Genera and species are listed alphabetically. Accepted names for taxa are in bold, followed by the author(s), place and date of publication, details of the type(s), including where it is held and assessment of its status. The institution(s) where type specimen(s) are housed are recorded using the international codes for Herbaria (Appendix 1) as listed in Holmgren et al’s Index Herbariorum (1981) continuously updated, see [http://sciweb.nybg.org/science2/IndexHerbariorum.asp]. Citation of authors follows Brummit & Powell (1992) Authors of Plant Names; for book abbreviations, the standard is Taxonomic Literature, 2nd edn. (Stafleu & Cowan 1976-88; supplements, 1992-2000); and periodicals are abbreviated according to B-P- H/S (Bridson, 1992) [http://www.ipni.org/index.html]. Synonyms are provided with relevant information on place of publication and details of the type(s). They are indented and listed in chronological order under the accepted taxon name. Synonyms are also cross-referenced under genus. -
The Genus Microtis R. Br. (Orchidaceae): a Taxonomic Revision with Notes on Biology
J. Adelaide Bot. Gard. 7(1): 45-89 (1984) THE GENUS MICROTIS R. BR. (ORCHIDACEAE): A TAXONOMIC REVISION WITH NOTES ON BIOLOGY R. Bates 38 Portmamock Street, Fairview Park, South Australia 5126 Abstract A taxonomic revision of Micro lis is presented in which nine species are recognised; M. globula is described as new. M. brownii, M. magnadenia and M. truncata are placed in synonymy with M. rara. M. media is treatéd as a synonym of M. unifolia. The biology, taxonomic affinities and distribution are considered for each species, a key is provided and a detailed description of each species is supplemented with illustrations. Introduction Since Robert Brown (1810) described Microtis there have been numerous taxa added but no complete revision has appeared, nor has any flora dealt with all species. Bentham (1873, p. 269) when discussing the difficulty of determining many Australian orchids, including Microtis, from dried material wrote, "It is to be hoped that the revision of these ... vvill be taken on byresident botanists who have the opportunity of studying them in the fresh state". With this in mind the present author has observed, photographed and collected all species of Microtis in the process of completing this revision. Plants were obtained from as many locations as possible and cultivated in Adelaide and populations of all Australian species studied in the field. Endophytic soil fungi on Microtis were isolated and identified by Dr J. Warcup (Waite Agricultural Research Institute). Chromosome counts were attempted but results were inconclusive. Loans were obtained from numerous herbaria (see acknowledgements). Types of all taxa were examined unless otherwise indicated in the text.