Of Pyrenomonas Salina (Cryptophyceae)
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Biology and Systematics of Heterokont and Haptophyte Algae1
American Journal of Botany 91(10): 1508±1522. 2004. BIOLOGY AND SYSTEMATICS OF HETEROKONT AND HAPTOPHYTE ALGAE1 ROBERT A. ANDERSEN Bigelow Laboratory for Ocean Sciences, P.O. Box 475, West Boothbay Harbor, Maine 04575 USA In this paper, I review what is currently known of phylogenetic relationships of heterokont and haptophyte algae. Heterokont algae are a monophyletic group that is classi®ed into 17 classes and represents a diverse group of marine, freshwater, and terrestrial algae. Classes are distinguished by morphology, chloroplast pigments, ultrastructural features, and gene sequence data. Electron microscopy and molecular biology have contributed signi®cantly to our understanding of their evolutionary relationships, but even today class relationships are poorly understood. Haptophyte algae are a second monophyletic group that consists of two classes of predominately marine phytoplankton. The closest relatives of the haptophytes are currently unknown, but recent evidence indicates they may be part of a large assemblage (chromalveolates) that includes heterokont algae and other stramenopiles, alveolates, and cryptophytes. Heter- okont and haptophyte algae are important primary producers in aquatic habitats, and they are probably the primary carbon source for petroleum products (crude oil, natural gas). Key words: chromalveolate; chromist; chromophyte; ¯agella; phylogeny; stramenopile; tree of life. Heterokont algae are a monophyletic group that includes all (Phaeophyceae) by Linnaeus (1753), and shortly thereafter, photosynthetic organisms with tripartite tubular hairs on the microscopic chrysophytes (currently 5 Oikomonas, Anthophy- mature ¯agellum (discussed later; also see Wetherbee et al., sa) were described by MuÈller (1773, 1786). The history of 1988, for de®nitions of mature and immature ¯agella), as well heterokont algae was recently discussed in detail (Andersen, as some nonphotosynthetic relatives and some that have sec- 2004), and four distinct periods were identi®ed. -
Diversity and Evolution of Protist Mitochondria: Introns, Gene Content and Genome Architecture
Diversity and Evolution of Protist Mitochondria: Introns, Gene Content and Genome Architecture 著者 西村 祐貴 内容記述 この博士論文は内容の要約のみの公開(または一部 非公開)になっています year 2016 その他のタイトル プロティストミトコンドリアの多様性と進化:イン トロン、遺伝子組成、ゲノム構造 学位授与大学 筑波大学 (University of Tsukuba) 学位授与年度 2015 報告番号 12102甲第7737号 URL http://hdl.handle.net/2241/00144261 Diversity and Evolution of Protist Mitochondria: Introns, Gene Content and Genome Architecture A Dissertation Submitted to the Graduate School of Life and Environmental Sciences, the University of Tsukuba in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Science (Doctral Program in Biologial Sciences) Yuki NISHIMURA Table of Contents Abstract ........................................................................................................................... 1 Genes encoded in mitochondrial genomes of eukaryotes ..................................................... 3 Terminology .......................................................................................................................... 4 Chapter 1. General introduction ................................................................................ 5 The origin and evolution of mitochondria ............................................................................ 5 Mobile introns in mitochondrial genome .............................................................................. 6 The organisms which are lacking in mitochondrial genome data ........................................ 8 Chapter 2. Lateral transfers of mobile introns -
Chloroplast Structure of the Cryptophyceae
CHLOROPLAST STRUCTURE OF THE CRYPTOPHYCEAE Evidence for Phycobiliproteins within Intrathylakoidal Spaces E . GANTT, M . R . EDWARDS, and L . PROVASOLI From the Radiation Biology Laboratory, Smithsonian Institution, Rockville, Maryland 20852, the Division of Laboratories and Research, New York State Department of Health, Albany, New York 12201, and the Haskins Laboratories, New Haven, Connecticut 06520 ABSTRACT Selective extraction and morphological evidence indicate that the phycobiliproteins in three Cryptophyceaen algae (Chroomonas, Rhodomonas, and Cryptomonas) are contained within intrathylakoidal spaces and are not on the stromal side of the lamellae as in the red and blue-green algae . Furthermore, no discrete phycobilisome-type aggregates have thus far been observed in the Cryptophyceae . Structurally, although not necessarily functionally, this is a radical difference . The width of the intrathylakoidal spaces can vary but is gen- erally about 200-300 A . While the thylakoid membranes are usually closely aligned, grana- type fusions do not occur. In Chroomonas these membranes evidence an extensive periodic display with a spacing on the order of 140-160 A . This periodicity is restricted to the mem- branes and has not been observed in the electron-opaque intrathylakoidal matrix . INTRODUCTION The varied characteristics of the cryptomonads (3), Greenwood in Kirk and Tilney-Bassett (10), are responsible for their indefinite taxonomic and Lucas (13) . The thylakoids have a tendency position (17), but at the same time they enhance to be arranged in pairs, that is, for two of them to their status in evolutionary schemes (1, 4) . Their be closely associated with a 30-50 A space between chloroplast structure is distinct from that of every them . -
Algal Toxic Compounds and Their Aeroterrestrial, Airborne and Other Extremophilic Producers with Attention to Soil and Plant Contamination: a Review
toxins Review Algal Toxic Compounds and Their Aeroterrestrial, Airborne and other Extremophilic Producers with Attention to Soil and Plant Contamination: A Review Georg G¨аrtner 1, Maya Stoyneva-G¨аrtner 2 and Blagoy Uzunov 2,* 1 Institut für Botanik der Universität Innsbruck, Sternwartestrasse 15, 6020 Innsbruck, Austria; [email protected] 2 Department of Botany, Faculty of Biology, Sofia University “St. Kliment Ohridski”, 8 blvd. Dragan Tsankov, 1164 Sofia, Bulgaria; mstoyneva@uni-sofia.bg * Correspondence: buzunov@uni-sofia.bg Abstract: The review summarizes the available knowledge on toxins and their producers from rather disparate algal assemblages of aeroterrestrial, airborne and other versatile extreme environments (hot springs, deserts, ice, snow, caves, etc.) and on phycotoxins as contaminants of emergent concern in soil and plants. There is a growing body of evidence that algal toxins and their producers occur in all general types of extreme habitats, and cyanobacteria/cyanoprokaryotes dominate in most of them. Altogether, 55 toxigenic algal genera (47 cyanoprokaryotes) were enlisted, and our analysis showed that besides the “standard” toxins, routinely known from different waterbodies (microcystins, nodularins, anatoxins, saxitoxins, cylindrospermopsins, BMAA, etc.), they can produce some specific toxic compounds. Whether the toxic biomolecules are related with the harsh conditions on which algae have to thrive and what is their functional role may be answered by future studies. Therefore, we outline the gaps in knowledge and provide ideas for further research, considering, from one side, Citation: G¨аrtner, G.; the health risk from phycotoxins on the background of the global warming and eutrophication and, ¨а Stoyneva-G rtner, M.; Uzunov, B. -
Cryptophyceae)
Plankton Benthos Res 4(3): 122–124, 2009 Plankton & Benthos Research © The Plankton Society of Japan Note Isolation and characterization of a novel virus infecting Teleaulax amphioxeia (Cryptophyceae) KEIZO NAGASAKI1,*, JIN-JOO KIM2, YUJI TOMARU1, YOSHITAKE TAKAO1,† & SATOSHI NAGAI1 1 Harmful Algal Bloom Division, National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2–17–5 Maruishi, Hatsukaichi, Hiroshima 739–0452, Japan 2 Department of Fisheries Biology, Pukyong National University, Busan 608–737, Korea Received 10 March 2009; Accepted 2 June 2009 Abstract: Teleaulax amphioxeia (Conrad) Hill is a marine free-living cryptophyte. Here, we report the basic characteristics of the cryptophyte-infecting virus “TampV (Teleaulax amphioxeia virus)”, the host of which is T. amphioxeia, as the first such virus to be successfully cultured. TampV strain 301 (TampV301) is a polyhedral large virus (ca. 203 nm in diameter), propagating in its host’s cy - toplasm. Because of the virion size, thin-section view and propagation characteristics, TampV301 was assumed to harbor a large dou- ble-stranded (ds) DNA genome; i.e., TampV is most likely one of the “nucleo-cytoplasmic large DNA viruses (NCLDVs)” belonging to the family Phycodnaviridae. Its infectivity was ‘strain-specific’ rather than ‘species-specific’ as is the case in other algal viruses. The burst size and latent period were roughly estimated to be 430–530 infectious units cellϪ1 and Ͻ24 h, respectively. Considering the uniqueness of cryptophytes’ evolutionary position and the host’s unique role within the complicated food chain involving kleptoplastid acquisition (composed of T. amphioxeia, the ciliate Myrionecta rubra and a dinoflagellate Dinophysis species), TampV is of much in- terest from the viewpoints of both eukaryotic host-virus coevolution and marine microbial ecology. -
Introns, Gene Content and Genome Architecture
Diversity and Evolution of Protist Mitochondria: Introns, Gene Content and Genome Architecture A Dissertation Submitted to the Graduate School of Life and Environmental Sciences, the University of Tsukuba in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Science (Doctral Program in Biologial Sciences) Yuki NISHIMURA Table of Contents Abstract ........................................................................................................................... 1 Genes encoded in mitochondrial genomes of eukaryotes ..................................................... 3 Terminology .......................................................................................................................... 4 Chapter 1. General introduction ................................................................................ 5 The origin and evolution of mitochondria ............................................................................ 5 Mobile introns in mitochondrial genome .............................................................................. 6 The organisms which are lacking in mitochondrial genome data ........................................ 8 Chapter 2. Lateral transfers of mobile introns among distantly related mitochondrial genomes ................................................................................................ 11 Summary ................................................................................................................................ 11 2-1. Leucocryptos -
Mitosis in the Cryptophyceae "
300 Nature Vol. 247 February 1 1974 16 Linskens and Heinen , and perhaps offer some clue as to the Lastly, Oakley and Dodge infer that Chroomonas (a Crypto meaning of the cytochemically detectable 'esterase' activity phyte with a chloroplast) is a primitive genus in my scheme on of the pellicle itself. the phylogeny of the algaez• This is not so as this type of O. MA'ITSSON* organism is fairly advanced along the evolutionary pathway. R. B. KNoxt If they were seeking a more primitive organism to investigate J. HEsLOP-HARRISON they should have chosen a Cryptophyte without chloroplasts Y. HESLOP-HARRISON or one with cyanelles (endosymbiotic Cyanophyceae). Cell Physiology Laboratory, ROBERT EDWARD LEE Royal Botanic Gardens, University of the Witwarersrand, Kew, Jan Smuts Avenue, Richmond, Surrey Johannesburg Received September 14, 1973. Received October 1,1973. * Present address: Institute of Plant Anatomy and Cytology, 1 Oakley, B. R., and Dodge, J. D., Nature, 244, 521 (1973). University of Copenhagen, S"dvgade 83, DK-1307 Copenhagen K. 2 Lee, R. E., Nature, 237, 44 (1972). 3 McDonald, K., J. Phycol., 8, 156 (1972). t Present address: Department of Botany, Australian National University, PO Box 4, Canberra ACf. Drs Oakley and Dodge reply: In regard to Dr R. E. Lee's 1 Knox, R. B., and Heslop-Harrison, J., Nature, 223, 92 (1969). correspondence, our letter to Natule l was not intended to be 2 Knox, R. B., and Heslop-Harrison, J., J. Cell Sci., 6, 1 (1970). particularly critical of Dr Lee's previous article on endosym 3 Heslop-Harrison, J., Heslop-Harrison, Y., Knox, R. -
Bangor University DOCTOR of PHILOSOPHY
Bangor University DOCTOR OF PHILOSOPHY Studies on micro algal fine-structure, taxonomy and systematics : cryptophyceae and bacillariophyceae. Novarino, Gianfranco Award date: 1990 Link to publication General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal ? Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Download date: 02. Oct. 2021 Studies on microalgal fine-structure, taxonomy, and systematics: Cryptopbyceae and Bacillariopbyceae In Two Volumes Volume I (Text) ,, ý,ý *-ýýI Twl by Gianfranco Novarino, Dottore in Scienze Biologiche (Rom) A Thesis submitted to the University of Wales in candidature for the degree of Philosophiae Doctor University of Wales (Bangor) School of Ocean Sciences Marine Science Laboratories Menai Bridge, Isle of Anglesey, United Kingdom December 1990 Lýýic. JýýVt. BEST COPY AVAILABLE Acknowledge mehts Dr I. A. N. Lucas, who supervised this work, kindly provided his helpful guidance, sharing his knowledge and expertise with patience and concern, critically reading the manuscripts of papers on the Cryptophyceae, and supplying many starter cultures of the strains studied here. -
Nanoplankton Protists from the Western Mediterranean Sea. II. Cryptomonads (Cryptophyceae = Cryptomonadea)*
sm69n1047 4/3/05 20:30 Página 47 SCI. MAR., 69 (1): 47-74 SCIENTIA MARINA 2005 Nanoplankton protists from the western Mediterranean Sea. II. Cryptomonads (Cryptophyceae = Cryptomonadea)* GIANFRANCO NOVARINO Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, U.K. E-mail: [email protected] SUMMARY: This paper is an electron microscopical account of cryptomonad flagellates (Cryptophyceae = Cryptomon- adea) in the plankton of the western Mediterranean Sea. Bottle samples collected during the spring-summer of 1998 in the Sea of Alboran and Barcelona coastal waters contained a total of eleven photosynthetic species: Chroomonas (sensu aucto- rum) sp., Cryptochloris sp., 3 species of Hemiselmis, 3 species of Plagioselmis including Plagioselmis nordica stat. nov/sp. nov., Rhinomonas reticulata (Lucas) Novarino, Teleaulax acuta (Butcher) Hill, and Teleaulax amphioxeia (Conrad) Hill. Identification was based largely on cell surface features, as revealed by scanning electron microscopy (SEM). Cells were either dispersed in the water-column or associated with suspended particulate matter (SPM). Plagioselmis prolonga was the most common species both in the water-column and in association with SPM, suggesting that it might be a key primary pro- ducer of carbon. Taxonomic keys are given based on SEM. Key words: Cryptomonadea, cryptomonads, Cryptophyceae, flagellates, nanoplankton, taxonomy, ultrastructure. RESUMEN: PROTISTAS NANOPLANCTÓNICOS DEL MAR MEDITERRANEO NOROCCIDENTAL II. CRYPTOMONADALES (CRYPTOPHY- CEAE = CRYPTOMONADEA). – Este estudio describe a los flagelados cryptomonadales (Cryptophyceae = Cryptomonadea) planctónicos del Mar Mediterraneo Noroccidental mediante microscopia electrónica. La muestras recogidas en botellas durante la primavera-verano de 1998 en el Mar de Alboran y en aguas costeras de Barcelona, contenian un total de 11 espe- cies fotosintéticas: Chroomonas (sensu auctorum) sp., Cryptochloris sp., 3 especies de Hemiselmis, 3 especies de Plagio- selmis incluyendo Plagioselmis nordica stat. -
Sequestration, Performance, and Functional Control of Cryptophyte Plastids in the Ciliate Myrionecta Rubra (Ciliophora)1
J. Phycol. 42, 1235–1246 (2006) r 2006 by the Phycological Society of America DOI: 10.1111/j.1529-8817.2006.00275.x SEQUESTRATION, PERFORMANCE, AND FUNCTIONAL CONTROL OF CRYPTOPHYTE PLASTIDS IN THE CILIATE MYRIONECTA RUBRA (CILIOPHORA)1 Matthew D. Johnson2 Horn Point Laboratory, Center for Environmental Science, University of Maryland, Cambridge, Maryland 21613, USA Torstein Tengs National Veterinary Institute, Section of Food and Feed Microbiology, Ullevaalsveien 68, 0454 Oslo, Norway David Oldach Institute of Human Virology, School of Medicine, University of Maryland, Baltimore, Maryland, USA and Diane K. Stoecker Horn Point Laboratory, Center for Environmental Science, University of Maryland, Cambridge, Maryland 21613, USA Myrionecta rubra (Lohmann 1908, Jankowski Key index words: ciliate; Geminigera cryophila; 1976) is a photosynthetic ciliate with a global dis- mixotrophy; Myrionecta rubra; nucleomorph; or- tribution in neritic and estuarine habitats and has ganelle sequestration long been recognized to possess organelles of Abbreviations: CMC, chloroplast–mitochondria cryptophycean origin. Here we show, using nucleo- complex; HL, high light; LL, low light; LMWC, morph (Nm) small subunit rRNA gene sequence low-molecular-weight compound; MAA, micros- data, quantitative PCR, and pigment absorption scans, that an M. rubra culture has plastids identi- porine-like amino acids; ML, maximum likelihood; NGC, number of genomes per cell; PE, photosyn- cal to those of its cryptophyte prey, Geminigera thesis versus irradiance; TBR, tree bisection-recon- cf. cryophila (Taylor and Lee 1971, Hill 1991). Using quantitative PCR, we demonstrate that G. cf. struction cryophila plastids undergo division in growing M. rubra and are regulated by the ciliate. M. rubra maintained chl per cell and maximum cellu- Myrionecta rubra (5Mesodinium rubrum) (Lohmann cell lar photosynthetic rates (Pmax) that were 6–8 times 1908, Jankowski 1976) (Mesodiniidae, Litostomatea) that of G. -
Nuclear Genome Sequence of the Plastid-Lacking
Cenci et al. BMC Biology (2018) 16:137 https://doi.org/10.1186/s12915-018-0593-5 RESEARCH ARTICLE Open Access Nuclear genome sequence of the plastid- lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids Ugo Cenci1,2†, Shannon J. Sibbald1,2†, Bruce A. Curtis1,2, Ryoma Kamikawa3, Laura Eme1,2,11, Daniel Moog1,2,12, Bernard Henrissat4,5,6, Eric Maréchal7, Malika Chabi8, Christophe Djemiel8, Andrew J. Roger1,2,9, Eunsoo Kim10 and John M. Archibald1,2,9* Abstract Background: The evolution of photosynthesis has been a major driver in eukaryotic diversification. Eukaryotes have acquired plastids (chloroplasts) either directly via the engulfment and integration of a photosynthetic cyanobacterium (primary endosymbiosis) or indirectly by engulfing a photosynthetic eukaryote (secondary or tertiary endosymbiosis). The timing and frequency of secondary endosymbiosis during eukaryotic evolution is currently unclear but may be resolved in part by studying cryptomonads, a group of single-celled eukaryotes comprised of both photosynthetic and non-photosynthetic species. While cryptomonads such as Guillardia theta harbor a red algal-derived plastid of secondary endosymbiotic origin, members of the sister group Goniomonadea lack plastids. Here, we present the genome of Goniomonas avonlea—the first for any goniomonad—to address whether Goniomonadea are ancestrally non-photosynthetic or whether they lost a plastid secondarily. Results: We sequenced the nuclear and mitochondrial genomes of Goniomonas avonlea and carried out a comparative analysis of Go. avonlea, Gu. theta, and other cryptomonads. The Go. avonlea genome assembly is ~ 92 Mbp in size, with 33,470 predicted protein-coding genes. Interestingly, some metabolic pathways (e.g., fatty acid biosynthesis) predicted to occur in the plastid and periplastidal compartment of Gu. -
From Algae to Flowering Plants
PP62CH23-Popper ARI 4 April 2011 14:20 Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants Zoe¨ A. Popper,1 Gurvan Michel,3,4 Cecile´ Herve,´ 3,4 David S. Domozych,5 William G.T. Willats,6 Maria G. Tuohy,2 Bernard Kloareg,3,4 and Dagmar B. Stengel1 1Botany and Plant Science, and 2Molecular Glycotechnology Group, Biochemistry, School of Natural Sciences, National University of Ireland, Galway, Ireland; email: [email protected] 3CNRS and 4UPMC University Paris 6, UMR 7139 Marine Plants and Biomolecules, Station Biologique de Roscoff, F-29682 Roscoff, Bretagne, France 5Department of Biology and Skidmore Microscopy Imaging Center, Skidmore College, Saratoga Springs, New York 12866 6Department of Plant Biology and Biochemistry, Faculty of Life Sciences, University of Copenhagen, Bulowsvej,¨ 17-1870 Frederiksberg, Denmark Annu. Rev. Plant Biol. 2011. 62:567–90 Keywords First published online as a Review in Advance on xyloglucan, mannan, arabinogalactan proteins, genome, environment, February 22, 2011 multicellularity The Annual Review of Plant Biology is online at plant.annualreviews.org Abstract This article’s doi: All photosynthetic multicellular Eukaryotes, including land plants 10.1146/annurev-arplant-042110-103809 by Universidad Veracruzana on 01/08/14. For personal use only. and algae, have cells that are surrounded by a dynamic, complex, Copyright c 2011 by Annual Reviews. carbohydrate-rich cell wall. The cell wall exerts considerable biologi- All rights reserved cal and biomechanical control over individual cells and organisms, thus Annu. Rev. Plant Biol. 2011.62:567-590. Downloaded from www.annualreviews.org 1543-5008/11/0602-0567$20.00 playing a key role in their environmental interactions.