Asymmetric Catalysis: Ligand Design and Conformational Studies
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From Synthetic Chemistry and Stereoselective Biotransformations
PP Periodica Polytechnica From Synthetic Chemistry and Chemical Engineering Stereoselective Biotransformations to Enzyme Biochemistry – The Bioorganic Chemistry Group at the Budapest 59(1), pp. 59-71, 2015 University of Technology and Economics DOI: 10.3311/PPch.7390 Creative Commons Attribution b Zoltán BOROS1, Gábor HORNYÁNSZKY1, József NAGY1, László POPPE1 * research article Received 04 March 2014; accepted after revision 05 May 2014 Abstract 1 Introduction The activity of Bioorganic Chemistry Group (BCG) within 1.1 Scientific background of the Bioorganic Chemistry Department of Organic Chemistry and Technology at Budapest Research Group University of Technology and Economics is related to various The activity of Bioorganic Chemistry Group (BCG) of areas of synthetic chemistry, biotechnology and enzymology. Department of Organic Chemistry and Technology at Budapest This review gives an overview on the research activity of the University of Technology and Economics is related to various group covering development of synthetic organic chemistry areas of synthetic chemistry, selective biocatalysis [1] and methods; stereoselective biotransformations with lipases, enzymology with major emphasis on development of novel ammonia-lyases and further biocatalysts in batch and tools for stereoselective synthesis [2]. continuous-flow reactions; novel enzyme immobilization One of the main challenges facing organic chemistry is methods; and enzyme structural and mechanistic studies by the rational synthesis of an ever growing number of complex, experimental and computational techniques. optically active natural products and their analogues [3]. According to the regulation of FDA production of chiral Keywords drugs, agrochemicals, fine chemicals has been allowed in synthetic organic chemistry, stereoselective biotransformation, enantiomerically pure form, because it often happens that only continuous-flow reaction, lipase, ammonia-lyase, enzyme one of the two enantiomers shows the required therapeutical immobilization, enzyme structure, enzyme mechanism, QM/ effect [4]. -
Separation of the Mixtures of Chiral Compounds by Crystallization
1 Separation of the Mixtures of Chiral Compounds by Crystallization Emese Pálovics2, Ferenc Faigl1,2 and Elemér Fogassy1* 1Department of Organic Chemistry and Technology, Budapest University of Technology and Economics, 2Research Group for Organic Chemical Technology, Hungarian Academy of Sciences, Budapest, Hungary 1. Introduction Reaction of a racemic acid or base with an optically active base or acid gives a pair of diastereomeric salts. Members of this pair exhibit different physicochemical properties (e.g., solubility, melting point, boiling point, adsorbtion, phase distribution) and can be separated owing to these differences. The most important method for the separation of enantiomers is the crystallization. This is the subject of this chapter. Preparation of enantiopure (ee~100%) compounds is one of the most important aims both for industrial practice and research. Actually, the resolution of racemic compounds (1:1 mixture of molecules having mirror-imagine relationship) still remains the most common method for producing pure enantiomers on a large scale. In these cases the enantiomeric mixtures or a sort of their derivatives are separated directly. This separation is based on the fact that the enantiomeric ratio in the crystallized phase differs from the initial composition. In this way, obtaining pure enantiomers requires one or more recrystallizations. (Figure 1). The results of these crystallizations (recrystallizations) of mixtures of chiral compounds differ from those observed at the achiral compounds. Expectedly, not only the stereoisomer in excess can be crystallized, because the mixture of enantiomers (with mirror image relationship) follows the regularities established from binary melting point phase diagrams, and ternary composition solubility diagrams, respectively, as a function of the starting enantiomer proportion. -
Diastereomers Diastereomers
Diastereomers Diastereomers: Stereoisomers that are not mirror images. enantiomer (R) (S) (S) (R) diastereomers diastereomer diastereomer enantiomer (R) (S) (R) (S) Diastereomers Diastereomers: Stereoisomers that are not mirror images. (R) enantiomer (S) (S) (R) diastereomer To draw the enantiomer of a molecule with chiral centers, invert stereochemistry at all chiral centers. (R) To draw a diastereomer of a molecule (R) with chiral centers, invert stereochemistry at only some chiral centers. Meso Compounds Meso: A molecule that contains chiral centers, but is achiral. 3 Are these molecules chiral? (R) (S) (These are diff eren t f rom th e 3 molecules I just showed; they have 2 -Cl’s, rather than 1 -Cl & 1 -OH. enantiomer (R) (S) (R) (S) These molecules are chiral mirror images of one another. (R,R) and (S,S) are not the same. Meso Compounds Meso: A molecule that contains chiral centers, but is achiral. 3 enantiomer ? (R) (S) (S) (R) no! 3 same molecule! enantiomer (R) (S) (R) (S) Meso Compounds Meso: A molecule that contains chiral centers, but is achiral. 3 enantiomer ? (R) (S) (S) (R) no! 3 same molecule! If a molecule • contains the same number of (R) and (S) stereocenters, and • those stereocenters have identical groups attached, then the molecule is achiral and meso. Meso Compounds Meso: A molecule that contains chiral centers, but is achiral. 3 same molecule (R) (S) (S) (R) 3 meso diastereomers meso diastereomer diastereomer enantiomer (R) (S) (R) (S) chiral chiral Properties of Enantiomers Most physical properties of enantiomers are identical. diethyl-(R,R)-tartrate diethyl-(S,S)-tartrate boiling point 280 °C 280 °C melting point 19 °C 19 °C density 1.204 g/mL 1.204 g/mL refractive index 1.447 1.447 i.e., chirality does not affect most physical properties. -
Page 1 of 108 RSC Advances
RSC Advances This is an Accepted Manuscript, which has been through the Royal Society of Chemistry peer review process and has been accepted for publication. Accepted Manuscripts are published online shortly after acceptance, before technical editing, formatting and proof reading. Using this free service, authors can make their results available to the community, in citable form, before we publish the edited article. This Accepted Manuscript will be replaced by the edited, formatted and paginated article as soon as this is available. You can find more information about Accepted Manuscripts in the Information for Authors. Please note that technical editing may introduce minor changes to the text and/or graphics, which may alter content. The journal’s standard Terms & Conditions and the Ethical guidelines still apply. In no event shall the Royal Society of Chemistry be held responsible for any errors or omissions in this Accepted Manuscript or any consequences arising from the use of any information it contains. www.rsc.org/advances Page 1 of 108 RSC Advances Applications of oxazolidinones as chiral auxiliaries in the asymmetric alkylation reaction applied to total synthesis Majid M. Heravi,* Vahideh Zadsirjan, Behnaz Farajpour Department of Chemistry, School of Science, Alzahra University, Vanak, Tehran, Iran Email: [email protected] Abstract Various chiral oxazolidinones (Evans' oxazolidinones) have been employed as effective chiral auxiliaries in the asymmetric alkylation of different enolates. This strategy has been found promising and successful when used as key step (steps) in the total synthesis of several biologically active natural products. In this report, we try to underscore the applications of Manuscript oxazolidinones as chiral auxiliary in asymmetric alkylation, and particularly in crucial chiral inducing steps in the total synthesis of natural products, showing biological activities. -
Chapter 4: Stereochemistry Introduction to Stereochemistry
Chapter 4: Stereochemistry Introduction To Stereochemistry Consider two of the compounds we produced while finding all the isomers of C7H16: CH3 CH3 2-methylhexane 3-methylhexane Me Me Me C Me H Bu Bu Me Me 2-methylhexane H H mirror Me rotate Bu Me H 2-methylhexame is superimposable with its mirror image Introduction To Stereochemistry Consider two of the compounds we produced while finding all the isomers of C7H16: CH3 CH3 2-methylhexane 3-methylhexane H C Et Et Me Pr Pr 3-methylhexane Me Me H H mirror Et rotate H Me Pr 2-methylhexame is superimposable with its mirror image Introduction To Stereochemistry Consider two of the compounds we produced while finding all the isomers of C7H16: CH3 CH3 2-methylhexane 3-methylhexane .Compounds that are not superimposable with their mirror image are called chiral (in Greek, chiral means "handed") 3-methylhexane is a chiral molecule. .Compounds that are superimposable with their mirror image are called achiral. 2-methylhexane is an achiral molecule. .An atom (usually carbon) with 4 different substituents is called a stereogenic center or stereocenter. Enantiomers Et Et Pr Pr Me CH3 Me H H 3-methylhexane mirror enantiomers Et Et Pr Pr Me Me Me H H Me H H Two compounds that are non-superimposable mirror images (the two "hands") are called enantiomers. Introduction To Stereochemistry Structural (constitutional) Isomers - Compounds of the same molecular formula with different connectivity (structure, constitution) 2-methylpentane 3-methylpentane Conformational Isomers - Compounds of the same structure that differ in rotation around one or more single bonds Me Me H H H Me H H H H Me H Configurational Isomers or Stereoisomers - Compounds of the same structure that differ in one or more aspects of stereochemistry (how groups are oriented in space - enantiomers or diastereomers) We need a a way to describe the stereochemistry! Me H H Me 3-methylhexane 3-methylhexane The CIP System Revisited 1. -
Download Author Version (PDF)
Chemical Science Accepted Manuscript This is an Accepted Manuscript, which has been through the Royal Society of Chemistry peer review process and has been accepted for publication. Accepted Manuscripts are published online shortly after acceptance, before technical editing, formatting and proof reading. Using this free service, authors can make their results available to the community, in citable form, before we publish the edited article. We will replace this Accepted Manuscript with the edited and formatted Advance Article as soon as it is available. You can find more information about Accepted Manuscripts in the Information for Authors. Please note that technical editing may introduce minor changes to the text and/or graphics, which may alter content. The journal’s standard Terms & Conditions and the Ethical guidelines still apply. In no event shall the Royal Society of Chemistry be held responsible for any errors or omissions in this Accepted Manuscript or any consequences arising from the use of any information it contains. www.rsc.org/chemicalscience Page 1 of 4 PleaseChemical do not adjust Science margins Chemical Science EDGE ARTICLE Absolute Structure Determination of Compounds with Axial and Planar Chirality Using the Crystalline Sponge Method a a a b a Received 00th January 20xx, Shota Yoshioka, Yasuhide Inokuma, Manabu Hoshino, Takashi Sato, and Makoto Fujita* Accepted 00th January 20xx The absolute stereochemistry of compounds with axial and planar chirality is successfully determined by the crystalline DOI: 10.1039/x0xx00000x sponge method without crystallization or derivatization of the compounds. This method is applied to absolute structure determination in the asymmetric synthesis of unique compounds with axial and planar chirality. -
Synthesis of Axially Chiral Biaryl Compounds by Asymmetric Catalytic Reactions with Transition Metals Pauline Loxq, E
Synthesis of axially chiral biaryl compounds by asymmetric catalytic reactions with transition metals Pauline Loxq, E. Manoury, Rinaldo Poli, Éric Deydier, A. Labande To cite this version: Pauline Loxq, E. Manoury, Rinaldo Poli, Éric Deydier, A. Labande. Synthesis of axially chiral biaryl compounds by asymmetric catalytic reactions with transition metals. Coordination Chemistry Re- views, Elsevier, 2016, 308, Part 2, pp.131-190. 10.1016/j.ccr.2015.07.006. hal-01929757 HAL Id: hal-01929757 https://hal.archives-ouvertes.fr/hal-01929757 Submitted on 1 Mar 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Synthesis of axially chiral biaryl compounds by asymmetric catalytic reactions with transition metals Pauline Loxq, a,b Eric Manoury,a,b Rinaldo Poli,a,b,c Eric Deydier a,b,d,* and Agnès Labande a,b,* a CNRS, LCC (Laboratoire de Chimie de Coordination), 205 route de Narbonne, BP 44099, F-31077 Toulouse Cedex 4, France. b Université de Toulouse, UPS, INPT, F-31077 Toulouse Cedex 4, France. c Institut Universitaire de France, 103, bd Saint-Michel, 75005 Paris, France. d IUT A Paul Sabatier, Departement de Chimie, Avenue Georges Pompidou, CS 20258, F- 81104 Castres Cedex, France Dedicated to the memory of our colleague and friend Guy Lavigne (1947-2015). -
Formation and Crystallization Based Separation of Diastereomeric Salts
Formation and Crystallization based Separation of Diastereomeric Salts Der Fakultät für Verfahrens- und Systemtechnik der Otto-von-Guericke-Universität Magdeburg zur Erlangung des akademischen Grades Doktoringenieur (Dr.-Ing.) am: 03.05.2012. vorgelegte Dissertation (Einreichungsdatum) von: M.Sc. Venkata Subbarayudu Sistla i Schriftliche Erklärung Ich erkläre hiermit, dass ich die vorliegende Arbeit ohne unzulässige Hilfe Dritter und ohne Benutzung anderer als der angegebenen Hilfsmittel angefertigt habe. Die aus fremden Quellen direkt oder indirekt übernommenen Gedanken sind als solche kenntlich gemacht. Insbesondere habe ich nicht die Hilfe einer Kommerziellen Promotionsberatung in Anspruch genommen. Dritte haben von mir weder unmittelbar noch mittelbar geldwerte Leistungen für Arbeiten erhalten, die im Zusammenhang mit dem Inhalt der vorgelegten Dissertation stehen. Die Arbeit wurde bisher weder im Inland noch im Ausland in gleicher oder ähnlicher Form als Dissertation eingereicht und ist als Ganzes auch noch nicht veröffentlicht. (Magdeburg, 03.05.2012) (M.Sc. Venkata Subbarayudu, Sistla) ii It’s an immense pleasure for me to dedicate this work to my Uncle M.K. Ramatarakam garu and to my parents Sistla. Lakshmi Savitri Annapurna Devi and Sistla.Venkateswarlu. iii Acknowledgement First of all, I bow in front of the lord Sita-Rama, Who is there along with me all along in my life and made me to follow the path of truth in all the situations when my mind was not stable. I would like to convey my profound gratitude to Professor Andreas Seidel-Morgenstern and apl. Professor Heike Lorenz as they gave me this great opportunity to explore myself and in the area of Crystallization. I am proud to be in the group PCG under the guidance of Prof. -
1,2-Asymmetric Induction in Carbonyl Compounds - a Computational Study
1,2-Asymmetric Induction in Carbonyl Compounds - A Computational Study by Jeffrey Retallick B.Sc., University of New Brunswick, 2015 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF Master of Science In the Graduate Academic Unit of Chemistry Supervisor(s): Ghislain Deslongchamps, Ph.D., Chemistry Examining Board: Rodney Cooper, M.Sc., Computer Science, Chair External Examiner: Ben Newling, Ph.D., Physics This thesis is accepted by the Dean of Graduate Studies THE UNIVERSITY OF NEW BRUNSWICK October, 2019 © Jeffrey Retallick, 2020 Abstract In asymmetric synthesis, it is important to reliably predict the major stereoisomeric prod- uct of a reaction. One such reaction is the nucleophilic addition to a carbonyl compound featuring an adjacent chiral carbon. Several reaction models exist in literature to predict the facial selectivity of these reactions. These models provide simple visual drawings to quickly predict the major product of such a reaction without requiring exhaustive quantum mechanical calculations. These models are used on a daily basis, and some models per- form better than others, making it valuable to investigate which ones are the most effective. For the first time in this thesis, high-level computations have been performed on all of the literature models to verify their efficacy. The results of this thesis offers a definitive answer that the Felkin-Anh and Wintner models are the most effective, and that bent bond theory offers an interesting insight on the mechanics of these reactions. ii Dedication Kyle, Nan, and Taryn. iii Acknowledgements Thanks to my family for their support. Ghislain, thank you for putting up with me over the past while. -
Chapter 8. Chiral Catalysts José M
Chapter 8. Chiral Catalysts José M. Fraile, José I. García, José A. Mayoral 1. The Origin of Enantioselectivity in Catalytic Processes: the Nanoscale of Enantioselective Catalysis. Enantiomerically pure compounds are extremely important in fields such as medicine and pharmacy, nutrition, or materials with optical properties. Among the different methods to obtain enantiomerically pure compounds, asymmetric catalysis1 is probably the most interesting and challenging, in fact one single molecule of chiral catalyst can transfer its chiral information to thousands or even millions of new chiral molecules. Enantioselective reactions are the result of the competition between different possible diastereomeric reaction pathways, through diastereomeric transition states, when the prochiral substrate complexed to the chiral catalyst reacts with the corresponding reagent. The efficiency of the chirality transfer, measured as enantiomeric excess [% ee = (R−S)/(R+S) × 100], depends on electronic and steric factors in a very subtle form. A simple calculation shows that differences in energy of only 2 kcal/mol between these transition states are enough to obtain more than 90% ee, and small changes in any of the participants in the catalytic process can modify significantly this difference in energy. Those modifications may occur in the near environment of the catalytic centre, at less than 1 nm scale, but also at longer distances in the catalyst, substrate, reagent, solvent, or support in the case of immobilized catalysts. This is the reason because asymmetric -
[2.2]Paracyclophane-Based Bisoxazoline Ligands and Their
molecules Communication PlanarCommunication Chiral [2.2]Paracyclophane-Based Bisoxazoline LigandsPlanar Chiral and Their [2.2]Paracyclophane-Based Applications in Cu-Mediated Bisoxazoline N–H InsertionLigands and Reaction Their Applications in Cu-Mediated N–H Insertion1, Reaction1, 1 2 1,3, Daniel M. Knoll y , Yuling Hu y, Zahid Hassan , Martin Nieger and Stefan Bräse * 1 DanielInstitute M. ofKnoll Organic 1,†, Yuling Chemistry Hu (IOC),1,†, Zahid Karlsruhe Hassan Institute 1, Martin of Nieger Technology 2 and (KIT), Stefan Fritz-Haber-Weg Bräse 1,3,* 6, 76131 Karlsruhe, Germany; [email protected] (D.M.K.); [email protected] (Y.H.); 1 [email protected] Institute of Organic Chemistry (Z.H.) (IOC), Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131 2 DepartmentKarlsruhe, Germany; of Chemistry, [email protected] University of Helsinki, (D.M.K.); P.O. [email protected] Box 55 A.I. Virtasen aukio (Y.H.); 1, 00014 Helsinki, Finland; martin.nieger@helsinki.fi[email protected] (Z.H.) 2 3 Institute Department of Toxicology of Chemistry, and University Genetics (ITG), of Helsinki, Karlsruhe P.O. InstituteBox 55 A.I. of Virtasen Technology aukio (KIT), 1, 00014 Helsinki, Hermann-von-Helmholtz-PlatzFinland; [email protected] 1, D-76344 Eggenstein-Leopoldshafen, Germany 3 * Correspondence: Institute of Toxicology [email protected]; and Genetics Tel.: (ITG),+49-7216-084-2902 Karlsruhe Institute of Technology (KIT), Hermann-von- TheseHelmholtz-Platz authors contributed 1, D-76344 equally Eggenstein-Leopoldshafen, to this work. Germany. y * Correspondence: [email protected]; Tel.: +49-7216-084-2902 † These authors contributed equally to this work. -
Kem-4.450 Asymmetric Synthesis
KemKem--4.4504.450 AsymmetricAsymmetric SynthesisSynthesis Prof. Ari Koskinen Laboratory of Organic Chemistry © Helsinki University of Technology, Laboratory of Organic Chemistry © Ari Koskinen, 2007 ChiralityChirality andand DifferingDiffering PropertiesProperties OO Carvone spearmint odor caraway NH NH 2 H 2 H Aspartame HO2C NCO2Me HO2C NCO2Me (Nutrasweet) O O sweet bitter O O Thalidomide N N O O OON OON H H sedative, hypnotic teratogenic © Helsinki University of Technology, Laboratory of Organic Chemistry © Ari Koskinen, 2007 PharmaceuticalsPharmaceuticals Growing need for enantiopure compounds Enantiomers/diastereomers may have adverse effects Diastereomers usually easier to separate Enantiomers: FDA required © Helsinki University of Technology, Laboratory of Organic Chemistry © Ari Koskinen, 2007 PharmaceuticalsPharmaceuticals Penicillamine: NH2 NH2 CO2H CO2H SH SH antidote for Pb, Au, Hg can cause optic atrophy => blindness Timolol: O OH O OH H H N O N N O N N N N N S S adrenergic blocker ineffective © Helsinki University of Technology, Laboratory of Organic Chemistry © Ari Koskinen, 2007 SalesSales ofof EnantiomericEnantiomeric DrugsDrugs andand IntermediatesIntermediates Chem. Eng. News 2001, 79 (40), 79-97. © Helsinki University of Technology, Laboratory of Organic Chemistry © Ari Koskinen, 2007 AsymmetricAsymmetric InductionInduction -- DefinitionsDefinitions Chirality - handedness Asymmetry - lacking all symmetry (except E) B Dissymmetry - lacking some element of symmery H NB!!! Molecules can be chiral but not asymmetric!