Supramolecular Chemistry: from Molecular Architectures to Functional Assemblies - Huaping Xu , Xi Zhang , Junqi Sun, Shuxun Cui
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
DNA-Functionalized Supramolecular Polymers
DNA-functionalized supramolecular polymers Citation for published version (APA): Wijnands, S. P. W., Meijer, E. W., & Merkx, M. (2019). DNA-functionalized supramolecular polymers: dynamic multicomponent assemblies with emergent properties. Bioconjugate Chemistry, 30(7), 1905-1914. https://doi.org/10.1021/acs.bioconjchem.9b00095 Document license: CC BY-NC-ND DOI: 10.1021/acs.bioconjchem.9b00095 Document status and date: Published: 17/07/2019 Document Version: Publisher’s PDF, also known as Version of Record (includes final page, issue and volume numbers) Please check the document version of this publication: • A submitted manuscript is the version of the article upon submission and before peer-review. There can be important differences between the submitted version and the official published version of record. People interested in the research are advised to contact the author for the final version of the publication, or visit the DOI to the publisher's website. • The final author version and the galley proof are versions of the publication after peer review. • The final published version features the final layout of the paper including the volume, issue and page numbers. Link to publication General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal. -
Supramolecular Chemistry
Supramolecular Chemistry Rohit Kanagal Introduction Supramolecular Chemistry is one of the most rapidly growing areas of chemistry. This branch of chemistry emphasises on ‘chemistry beyond the molecule’ and ‘chemistry of molecular assemblies and the intermolecular bond’. Supramolecular Chemistry lends the idea of how molecules interact with one another. It aims to understand the structural and functional properties of systems that contain more than one molecular assembly. Phenomena such as molecular self-assembly, protein folding, molecular recognition, host-guest chemistry, mechanically-interlocked molecular architectures, and dynamic covalent chemistry are all integral parts of Supramolecular chemistry. These phenomena are controlled by certain non- covalent interactions between molecules such as ion-dipole, dipole-dipole interactions, van der Waals forces, hydrogen bonding, metal coordination, hydrophobic forces, pi-pi interactions, and various electrostatic effects. Over the last few decades, the ideas and studies of supramolecular chemistry have entered multiple fields such as chemical science, biological science, physical science, and material science. (Hasenknopf) An example of a supramolecular assembly Superamolecule A supramolecule or supramolecular assembly is a well-defined system of molecules that are held together with non-covalent intermolecular forces to form a bigger unit having its own organization, stability and tendency to associate or isolate. These are formed through the interactions between a molecule having convergent binding sites (such as hydrogen bond donor atoms and a large cavity) and another molecule having divergent binding sites (such as hydrogen bond acceptor atoms). The molecule having convergent binding sites is called host or receptor molecule while the molecule having divergent binding sites is called a guest or analyte molecule. -
From Supramolecular Chemistry to Nanotechnology: Assembly of 3D Nanostructures*
Pure Appl. Chem.,Vol. 81, No. 12, pp. 2225–2233, 2009. doi:10.1351/PAC-CON-09-07-04 © 2009 IUPAC, Publication date (Web): 3 November 2009 From supramolecular chemistry to nanotechnology: Assembly of 3D nanostructures* Xing Yi Ling‡, David N. Reinhoudt, and Jurriaan Huskens Molecular Nanofabrication Group, MESA+ Institute for Nanotechnology, University of Twente, Enschede, The Netherlands Abstract: Fabricating well-defined and stable nanoparticle crystals in a controlled fashion re- ceives growing attention in nanotechnology. The order and packing symmetry within a nanoparticle crystal is of utmost importance for the development of materials with unique op- tical and electronic properties. To generate stable and ordered 3D nanoparticle structures, nanotechnology is combined with supramolecular chemistry to control the self-assembly of 2D and 3D receptor-functionalized nanoparticles. This review focuses on the use of molecu- lar recognition chemistry to establish stable, ordered, and functional nanoparticle structures. The host–guest complexation of β-cyclodextrin (CD) and its guest molecules (e.g., adaman- tane and ferrocene) are applied to assist the nanoparticle assembly. Direct adsorption of supramolecular guest- and host-functionalized nanoparticles onto (patterned) CD self-as- sembled monolayers (SAMs) occurs via multivalent host–guest interactions and layer-by- layer (LbL) assembly. The reversibility and fine-tuning of the nanoparticle-surface binding strength in this supramolecular assembly scheme are the control parameters in the process. Furthermore, the supramolecular nanoparticle assembly has been integrated with top- down nanofabrication schemes to generate stable and ordered 3D nanoparticle structures, with con- trolled geometries and sizes, on surfaces, other interfaces, and as free-standing structures. Keywords: nanoparticles; nanoparticle arrays; self-assembly; self-assembled monolayer; supramolecular chemistry. -
Part III Project 2016/17 Professor Chris Hunter Physical Organic
Department of Chemistry: Part III Project 2016/17 Professor Chris Hunter Physical Organic Chemistry or Synthetic Supramolecular Chemistry EMAIL [email protected] Group web site http://www-hunter.ch.cam.ac.uk/ Contact details: I will be available to discuss projects on Monday 15th May (please email to make an appointment) The success of synthetic chemistry in the last century was built on the development of a set of design rules that allowed the quantitative prediction of reactivity and conformation based simply on chemical structure. The goal of our research is to establish a comparable set of rules that can be used for the design of non-covalent systems with equal reliability. Research projects are available in different areas and can be tailored to involve combinations of different techniques: organic synthesis; coordination chemistry; structural and thermodynamic characterisation of intermolecular complexes using NMR spectroscopy, mass spectrometry, X-ray crystallography; high-throughput physical organic chemistry; molecular design and molecular modelling. Physical Organic Chemistry: Quantitative Non-Covalent Chemistry Synthetic supramolecular systems are ideally suited for the systematic study and quantitative determination of the thermodynamic properties of non-covalent interactions. We are developing new experimental methods for quantifying the relative contributions of different factors that influence the behaviour of complex systems. By characterising the relationship between chemical structure and thermodynamic properties, we aim to develop rules of thumb (and software) for predicting the properties of molecular systems based on a quantitative fundamental understanding of non-covalent interactions. This project will involve some synthetic chemistry, but the focus will be on quantitative physical measurements using a variety of spectroscopic techniques and instrumentation as well as mathematical model building. -
Spatiotemporal Control and Superselectivity in Supramolecular Polymers Using Multivalency
Spatiotemporal control and superselectivity in supramolecular polymers using multivalency Lorenzo Albertazzia, Francisco J. Martinez-Veracoecheab, Christianus M. A. Leendersa, Ilja K. Voetsa, Daan Frenkelb, and E. W. Meijera,1 aInstitute for Complex Molecular Systems and Laboratory of Macromolecular and Organic Chemistry, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands; and bDepartment of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom Edited by Michael L. Klein, Temple University, Philadelphia, PA, and approved May 28, 2013 (received for review February 22, 2013) Multivalency has an important but poorly understood role in pegylated BTAs self-assemble in water through a combination of molecular self-organization. We present the noncovalent synthesis hydrogen bonding and hydrophobic effects to create long su- of a multicomponent supramolecular polymer in which chemically pramolecular polymers of ∼0.1–10 μminlength(9). distinct monomers spontaneously coassemble into a dynamic, In the biology and chemistry communities, there is intense functional structure. We show that a multivalent recruiter is able interest in the role of multivalency as a tool to encode structure to bind selectively to one subset of monomers (receptors) and and function into soft materials. Several fascinating papers trigger their clustering along the self-assembled polymer, be- reported how nature exploits multivalency to exert control over havior that mimics raft formation in cell membranes. This phe- spatial segregation and phase separation inside living cells (10). nomenon is reversible and affords spatiotemporal control over Segregation of proteins and sphingolipids in lipid raft domains the monomer distribution inside the supramolecular polymer by superselective binding of single-strand DNA to positively charged (11) is a remarkable example of this phenomenon. -
Supramolecular Assembly of DNA-Phenanthrene Conjugates Into Vesicles with Light-Harvesting Properties Caroline D
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Bern Open Repository and Information System (BORIS) Supramolecular Assembly of DNA-Phenanthrene Conjugates into Vesicles with Light-Harvesting Properties Caroline D. Bösch, Jovana Jevric, Nutcha Bürki, Markus Probst, Simon M. Langenegger, and Robert Häner* Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland Supporting Information Placeholder ABSTRACT : Vesicle-shaped supramolecular polymers are formed by self-assembly of a DNA duplex containing phenanthrene overhangs at both ends. In presence of spermine, the phenanthrene overhangs act as sticky ends linking the DNA duplexes together. In aqueous solution, the assembly leads to vesicles in the range of 50 – 200 nm, as shown by electron microscopy and dynamic light scattering. Fluorescence measurements show that the assembled phenanthrene units act as light-harvesting antennae and transfer absorbed energy to an acceptor, such as pyrene or Cy3, which can either be directly added to the polymer or attached via a complementary DNA strand. The presence of DNA in the nanostructures allows the con- struction of light-harvesting vesicles that are amenable to functionalization with different chemical groups. DNA is used to create one-, two-, or three-dimensional assemblies phodiester groups. Hybridization leads to the formation of DNA du- due to its unique molecular recognition properties which opens oppor- plex 1*2 containing three phenanthrenes at each end. Oligonucleotides tunities to precisely organize functional groups within space.1-9 Func- 3 and 4 serve as unmodified control sequences. tional supramolecular assemblies of DNA object have a potential for biomedical, biomimetic and electronic applications.10-18 DNA Table 1. -
Formation of Functionalized Supramolecular Metallo-Organic Oligomers with Cucurbituril a Thesis Presented to the Faculty Of
Formation of Functionalized Supramolecular Metallo-organic Oligomers with Cucurbituril A thesis presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Master of Science Ian M. Del Valle December 2015 © 2015 Ian M. Del Valle. All Rights Reserved. 2 This thesis titled Formation of Functionalized Supramolecular Metallo-organic Oligomers with Cucurbituril by IAN M. DEL VALLE has been approved for the Department of Chemistry and Biochemistry and the College of Arts and Sciences by Eric Masson Associate Professor of Chemistry and Biochemistry Robert Frank Dean, College of Arts and Sciences 3 Abstract DEL VALLE, IAN M., M.S., December 2015, Chemistry Formation of Functionalized Supramolecular Metallo-organic Oligomers with Cucurbituril Director of Thesis: Eric Masson The goal of this project is to functionalize supramolecular oligomer chains with amino acids and nucleic acids in order to observe interactions with proteins and DNA. Chiral substituents are also desirable to induce helicality in the oligomer much like DNA. We explored different pathways to afford these oligomers. The first project involves forming metallo-organic oligomers using non-covalent bonds and then functionalizing them. We synthesize ligands and use alkyne-azide cycloadditions to functionalize them. These ligands can then be coordinated to various transition metals. The aromatic regions of these oligomers can then self-assemble into tube-like chains with the participation of cucurbit[8]uril. Second, we explore an alternate pathway to form functionalized chains. This second set of chains coupled amines with carboxylic acid groups attached to the ligands. This project hopes to avoid solubility problems experienced with the first project. -
Supramolecular Assemblies of Cucurbiturils with Photoactive, Π
Review 1 DOI: 10.1002/ijch.201700114 2 3 4 Supramolecular Assemblies of Cucurbiturils with 5 Photoactive, -conjugated Chromophores 6 p 7 [a] [a, b] 8 Ahmet Koc and Do¨nu¨s Tuncel* 9 10 11 Abstract: Supramolecular assemblies of cucurbituril (CBn) polymers. How supramolecular complexes of p-conjugated 12 homologues with p-conjugated chromophores will be over- chromophores including porphyrin derivatives, conjugated 13 viewed. Special emphasis will be given to the effect of CBn oligomers and polymers with CBn could be utilized in the 14 on the optical properties of conjugated oligomers and theranostic and photonic applications will also be discussed. 15 Keywords: Cucurbiturils · supramolecular assemblies · p-conjugated chromophores · porphyrins · conjugated polymers 16 17 18 1. Introduction 10 glycoluril units, respectively.[9] The new members of CB 19 family that shows remarkable differences in their cavity sizes, 20 In this review, we are going to discuss the supramolecular guest binding affinities, size selectivity and water-solubility 21 assemblies of cucurbituril (CBn) homologues with photo- attracted huge interest by the supramolecular chemists.[10] 22 active, conjugated chromophores. Photoactive, p-conjugated Among them, CB7, with good water solubility, appropriate 23 chromophores have many important applications in the areas guest size selectivity and binding affinity, have been the most 24 of sensing, catalysis, lasers, imaging, theranostics and pho- in demand up to now. 25 tonics.[1–6] However, there are some drawbacks that should be Compared to other well-known macrocyclic host mole- 26 overcome in order to utilize them in a wider context including cules such as cyclodextrins, calixarenes and crown ethers, CBs 27 stability (chemical, thermal, photo), solubility, poor optical not only exhibit the similar low-toxic nature, but they also 28 performance (low quantum yields, low lifetime) due to offer much higher chemical stability and far better guest 29 aggregation. -
Supramolecular Catalysts Green Chemistry
139 7 Supramolecular Catalysis as a Tool for Green Chemistry Courtney J. Hastings 7.1 Introduction Catalysis is central to advancing green chemistry in the area of synthetic chemis- try [1,2]. Beyond replacing stoichiometric reagents, catalysts have the potential to streamline multistep synthesis by enabling new bond-forming processes to shorten synthetic sequences and achieve better step economy [3,4]. Supra- molecular catalysis and the application of supramolecular concepts to catalytic reactions is emerging as a valuable tool for improving catalytic reactions for syn- thetic chemistry. Supramolecular catalysis can enable aqueous reaction condi- tions, improve reactions selectivity, improve catalyst lifetime, and enable tandem reactions, all of which can have positive impacts on the cost, waste, and energy associated with a reaction. The field of supramolecular chemistry concerns the design of molecular enti- ties that are defined by reversible, noncovalent interactions. While each supra- molecular interaction is quite weak individually, the effect of many such interactions working in concert can produce strongly associated and structurally well-defined molecular species [5–7]. Such additive effects are responsible for the spectacular structural complexity found in biomacromolecules such as pro- teins. Efforts to characterize these interactions have provided chemists with a “toolbox” of reliable methods to program the association between two or more molecules to form a single complexed species. Thus, supramolecular chemistry represents a complementary approach toward molecular construction, and one that offers certain advantages over covalent chemistry [5–8]. Like supramolecular interactions, host–guest binding relies on manifold non- covalent interactions, with the added requirement that the host possess an inte- rior cavity that is complementary in size and shape to the guest molecule [9–11]. -
PMSE Washington F'2000 Preprint Template
American Chemical Society Division of Polymeric Materials: Science and Engineering Spring 2009 PMSE Preprints Volume 100, Spring 2009 Salt Lake City, Utah, USA 22-26 March 2009 ISBN: 978-1-60560-960-7 Printed from e-media with permission by: Curran Associates, Inc. 57 Morehouse Lane Red Hook, NY 12571 www.proceedings.com Some format issues inherent in the e-media version may also appear in this print version. Copyright© (2009) by PMSE Division of ACS All rights reserved. Printed by Curran Associates, Inc. (2009) For permission requests, please contact PMSE Division of ACS at the address below. PMSE Division of ACS 5200 Bayway Drive Baytown, Texas 77520 Phone: (281) 834-0222 Fax: (281) 834-2395 [email protected] TABLE OF CONTENTS 6FDA-6FpDA as a Multipurpose Polymer: Synthesis and Influence of Casting Process on Gas Separation Properties of Ultra High MW 6FDA-6FpDA.........................................................................1 Javier de Abajo, Mariola Calle, José G. de la Campa, Carolina García-Sanchez, Angel E. Lozano, Antonio Hernandez, Angel Marcos-Fernandez, Dulce M. Muñoz, Laura Palacio, Pedro Pradanos, Alberto Tena Advances in Polymeric Systems .........................................................................................................................3 Eric Baer, A. Hiltner Characterization and Modelling of Organic Vapors Sorption, Diffusion and Swelling in High Free Volume Polynorbornene with Trimethyl-Silyl Side Groups .........................................................4 Michele Galizia, -
Synthesis and Characterization of Supramolecular Cucurbituril, Molybdenum 2,2'-Bipyridyl Complex
International Journal of Scientific & Engineering Research Volume 8, Issue 10, October-2017 140 ISSN 2229-5518 SYNTHESIS AND CHARACTERIZATION OF SUPRAMOLECULAR CUCURBITURIL, MOLYBDENUM 2,2’-BIPYRIDYL COMPLEX Ms. Anitha. V1 , Dr. Nandagopal. J2, Ms. Ramanachiar.R3, Ms. Sasikala.S4, Ms. Ariyamala .R5 Department of chemistry, Velammal Engineering college, Chennai, Tamilnadu. Abstract Supra molecular Cucurbituril, Molybdenum2,2’-bipyridyl complex has been synthesized by precipitation followed by slow evaporation techniques. Changes in the physical properties of the ligand and the complex were characterized by melting point and solubility test . The absorption spectrum of the Cucurbituril, Molybdenum2,2’-bipyridyl complex were studied by decreasing and increasing concentrations by using UV – Visible spectrophotometer and IR spectrophotometer. The interaction between the metal and ligands were studied by UV- visible spectral analysis. The functional groups and modes of vibration were identified by IR spectral analysis. Key words: Cucurbituril, evaporation, precipitation, absorption, ligand, spectrophotometer. INTRODUCTION complex of Cucurbit[6]uril which incorporates the p-Xylene diammonium cation into the macrocyclic A Supramolecular assembly or “supramolecule” is a cavity. Researchers have shown that Cucurbit[6]uril well defined complex of molecules held together by acts as a catalyst in cyclo-addition reactions. noncovalent bonds. Cucurbiturils are macrocyclic Detailed examination has been done on the molecules consisting of glycouril repeating units. construction of supramolecular organic, inorganic These supramolecular compounds are particularly compounds from macrocyclic cavitand interesting to chemists because they are molecular cucurbit[6]Uril and mono and polynuclear aqua containers that are capable of binding other complexes. Cucurbit[6]uril is used in the molecules within their cavities. -
Formation of Self-Healing Supramolecular Materials Using Inclusion Complexes Between Cyclodextrin and Hydrophobic Guest Groups
Formation of Self-healing Supramolecular Title Materials Using Inclusion Complexes between Cyclodextrin and Hydrophobic Guest Groups Author(s) 角田, 貴洋 Citation Issue Date Text Version ETD URL https://doi.org/10.18910/34046 DOI 10.18910/34046 rights Note Osaka University Knowledge Archive : OUKA https://ir.library.osaka-u.ac.jp/ Osaka University Formation of Self-healing Supramolecular Materials Using Inclusion Complexes between Cyclodextrin and Hydrophobic Guest Groups A Doctoral Thesis by Takahiro Kakuta Submitted to the Graduate School of Science, Osaka University February, 2014 Acknowledgements This work was carried out from 2011 to 2014 under the supervision of Professor Dr. Akira Harada at the Department of Macromolecular Science, Graduate School of Science, Osaka University. The author would like to express his sincere gratitude to Professor Dr. Akira Harada for his guidance and assistance throughout this study. Grateful acknowledgements are made to Assistant Professor Dr. Yoshinori Takashima for his continuing help. The author is also grateful to Professor Dr. Hiroyasu Yamaguchi, Associate Professor Dr. Akihito Hashidzume, Dr. Yuichiro Kobayashi, Dr. Takashi Nakamura, Mrs. Miyuki Otsubo, Dr. Yongtai Zheng, Mr. Masaki Nakahata, Ms. Tomoko Sekine, Mr. Kazuhisa Iwaso, Mr. Chun-Yen Liu, Mr. Lee Isaac Eng Ting, and Mr. Takaaki Sano, for their helpful suggestion and all the members of Harada laboratory for their cooperation and friendship. Grateful acknowledgements are also made to Professor Dr. Tadashi Inoue for dynamic viscoelastic measurement, Mr. Seiji Adachi and Dr. Naoya Inadumi for NMR measurement, and Dr. Akihiro Ito for SEM experiments. The author appreciates the financial support from JST-CREST (Japan Science Technology, Core Research of Excellence Science Technology) (May, 2010-present).