Cones, Needles and Wood: <I> Micraspis
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Phylogeny and Classification of Cryptodiscus, with a Taxonomic Synopsis of the Swedish Species
Fungal Diversity Phylogeny and classification of Cryptodiscus, with a taxonomic synopsis of the Swedish species Baloch, E.1,3*, Gilenstam, G.2 and Wedin, M.1 1Department of Cryptogamic Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden. 2Department of Ecology and Environmental Sciences, Umeå University, SE-901 87 Umeå, Sweden. 3Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK. Baloch, E., Gilenstam, G. and Wedin, M. (2009). Phylogeny and classification of Cryptodiscus, with a taxonomic synopsis of the Swedish species. Fungal Diversity 38: 51-68. The phylogeny, taxonomy and classification of Cryptodiscus are examined. The current generic and species delimitations, and the relationship of the genus within the Ostropomycetidae, are tested by molecular phylogenetic analyses of the nuclear ITS and LSU rDNA and the mitochondrial SSU rDNA. In our new circumscription Cryptodiscus is a monophyletic group of saprotrophic and lichenized fungi characterized by small, urceolate apothecia, mostly hyaline ascomatal walls without any embedded crystals, no clear periphysoids, and with oblong to narrow- cylindrical septate ascospores. Cryptodiscus forms a well-supported clade together with Absconditella and the remaining Stictidaceae. Paschelkiella and Bryophagus are synonymised with Cryptodiscus. Species excluded from Cryptodiscus are Cryptodiscus anguillosporus, C. angulosus, C. microstomus, and C. rhopaloides. Cryptodiscus in Sweden is revised and six species are accepted, of which one is newly described: C. foveolaris, C. gloeocapsa comb. nov. (≡ Bryophagus gloeocapsa), C. incolor sp. nov., C. pallidus, C. pini comb. nov. (≡ Paschelkiella pini), and the rediscovered species C. tabularum. The additional new combinations Cryptodiscus similis comb. nov. and C. -
Methods and Work Profile
REVIEW OF THE KNOWN AND POTENTIAL BIODIVERSITY IMPACTS OF PHYTOPHTHORA AND THE LIKELY IMPACT ON ECOSYSTEM SERVICES JANUARY 2011 Simon Conyers Kate Somerwill Carmel Ramwell John Hughes Ruth Laybourn Naomi Jones Food and Environment Research Agency Sand Hutton, York, YO41 1LZ 2 CONTENTS Executive Summary .......................................................................................................................... 8 1. Introduction ............................................................................................................ 13 1.1 Background ........................................................................................................................ 13 1.2 Objectives .......................................................................................................................... 15 2. Review of the potential impacts on species of higher trophic groups .................... 16 2.1 Introduction ........................................................................................................................ 16 2.2 Methods ............................................................................................................................. 16 2.3 Results ............................................................................................................................... 17 2.4 Discussion .......................................................................................................................... 44 3. Review of the potential impacts on ecosystem services ....................................... -
Ascomyceteorg 06-05 Ascomyceteorg
“The story so far...” An Interim Bibliography of Hans-Otto Baral for the Years 1981-2014 Martin BEMMANN Ascomycete.org, 6 (5) : 95-98. Décembre 2014 Mise en ligne le 18/12/2014 Hans-Otto Baral, aka “Zotto”, has contributed a vast amount of pa- BARAL H.-O. 1987. — Der Apikalapparat der Helotiales. Eine lichtmi- pers and digital publications which have inspired not only his aca- kroskopische Studie über Arten mit Amyloidring. Zeitschrift für demic colleagues but also the community of amateur mycologists, Mykologie, 53 (1): 119-135. whose efforts he has included in his ascomycete research for de- [http://www.dgfm-ev.de/sites/default/files/ZM531119Baral.pdf] cades, thus helping stimulate their own work. This compilation of BARAL H.-O. 1989. — Beiträge zur Taxonomie der Discomyceten I. his publications and ephemeral works to date is also intended as a Zeitschrift für Mykologie, 55 (1): 119-130. guide for all those who are unaware of its extent, and includes keys [http://www.dgfm-ev.de/sites/default/files/ZM551119Baral.pdf] and some otherwise unpublished papers shared on the DVD “In Vivo BARAL H.-O. 1989. — Beiträge zur Taxonomie der Discomyceten II. Veritas 2005”. Die Calycellina-Arten mit 4sporigen Asci. Beiträge zur Kenntnis der The form “H.-O.” Baral as opposed to “H. O.” Baral has been used Pilze Mitteleuropas, 5: 209-236. consistently throughout, though it varies in the different publica- BARAL H.-O. 1992. — Vital versus herbarium taxonomy: morphologi- tions. Only names of genera and species are set in italics even if this cal differences between living and dead cells of Ascomycetes, and deviates from the original titles. -
<I>Cyanodermella Asteris</I> Sp. Nov. (<I>Ostropales</I>)
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 Mycotaxon, Ltd. ©2017 January–March 2017—Volume 132, pp. 107–123 http://dx.doi.org/10.5248/132.107 Cyanodermella asteris sp. nov. (Ostropales) from the inflorescence axis of Aster tataricus Linda Jahn1,*, Thomas Schafhauser2, Stefan Pan2, Tilmann Weber2,7, Wolfgang Wohlleben2, David Fewer3, Kaarina Sivonen3, Liane Flor4, Karl-Heinz van Pée4, Thibault Caradec5, Philippe Jacques5,8, Mieke M.E. Huijbers6,9, Willem J.H. van Berkel6 & Jutta Ludwig-Müller1,* 1 Institut für Botanik, Technische Universität Dresden, 01062 Dresden, Germany 2 Mikrobiologie und Biotechnologie, Interfakultäres Institut für Mikrobiologie und Infektionsmedizin, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 28, 72076 Tübingen, Germany 3 Microbiology and Biotechnology Division, Dept. of Food and Environmental Sciences, University of Helsinki, Viikinkaari 9, FIN-00014, Helsinki, Finland 4 Allgemeine Biochemie, Technische Universität Dresden, 01069 Dresden, Germany 5 Laboratoire ProBioGEM, Université Lille1- Sciences et Technologies, Villeneuve d’Ascq, France 6 Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703 HA Wageningen, The Netherlands 7 moved to: Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet Bygning 220, 2800 Kgs. Lyngby, Denmark 8 moved to: Gembloux Agro-Bio Tech, Université de Liege, Passage des Déportés 2, 5030 Gembloux, Belgium 9 moved to: Department of Biotechnology, Technical University Delft, Van der Maasweg 9, 2629 HZ Delft, The Netherlands *Correspondence to: [email protected], [email protected] Abstract—An endophytic fungus isolated from the inflorescence axis ofAster tataricus is proposed as a new species. Phylogenetic analyses based on sequences from the ribosomal DNA cluster (the ITS1+5.8S+ITS2, 18S, and 28S regions) and the RPB2 gene revealed a relationship between the unknown fungus and the Stictidaceae lineage of the Ostropales. -
Doctoral Dissertation Template
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE METAGENOMIC INSIGHTS INTO MICROBIAL COMMUNITY RESPONSES TO LONG-TERM ELEVATED CO2 A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By QICHAO TU Norman, Oklahoma 2014 METAGENOMIC INSIGHTS INTO MICROBIAL COMMUNITY RESPONSES TO LONG-TERM ELEVATED CO2 A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Jizhong Zhou, Chair ______________________________ Dr. Meijun Zhu ______________________________ Dr. Fengxia (Felicia) Qi ______________________________ Dr. Michael McInerney ______________________________ Dr. Bradley Stevenson © Copyright by QICHAO TU 2014 All Rights Reserved. Acknowledgements At this special moment approaching the last stage for this degree, I would like to express my gratitude to all the people who encouraged me and helped me out through the past years. Dr. Jizhong Zhou, my advisor, is no doubt the most influential and helpful person in pursuing my academic goals. In addition to continuous financial support for the past six years, he is the person who led me into the field of environmental microbiology, from a background of bioinformatics and plant molecular biology. I really appreciated the vast training I received from the many interesting projects I got involved in, without which I would hardly develop my broad experienced background from pure culture microbial genomics to complex metagenomics. Dr. Zhili He, who played a role as my second advisor, is also the person I would like to thank most. Without his help, I could be still struggling working on those manuscripts lying in my hard drive. I definitely learned a lot from him in organizing massed results into logical scientific work—skills that will benefit me for life. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Wood Staining Fungi Revealed Taxonomic Novelties in Pezizomycotina: New Order Superstratomycetales and New Species Cyanodermella Oleoligni
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 85: 107–124. Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni E.J. van Nieuwenhuijzen1, J.M. Miadlikowska2*, J.A.M.P. Houbraken1*, O.C.G. Adan3, F.M. Lutzoni2, and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Department of Biology, Duke University, Durham, NC 27708, USA; 3Department of Applied Physics, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, The Netherlands *Correspondence: J.M. Miadlikowska, [email protected]; J.A.M.P. Houbraken, [email protected] Abstract: A culture-based survey of staining fungi on oil-treated timber after outdoor exposure in Australia and the Netherlands uncovered new taxa in Pezizomycotina. Their taxonomic novelty was confirmed by phylogenetic analyses of multi-locus sequences (ITS, nrSSU, nrLSU, mitSSU, RPB1, RPB2, and EF-1α) using multiple reference data sets. These previously unknown taxa are recognised as part of a new order (Superstratomycetales) potentially closely related to Trypetheliales (Dothideomycetes), and as a new species of Cyanodermella, C. oleoligni in Stictidaceae (Ostropales) part of the mostly lichenised class Lecanoromycetes. Within Superstratomycetales a single genus named Superstratomyces with three putative species: S. flavomucosus, S. atroviridis, and S. albomucosus are formally described. Monophyly of each circumscribed Superstratomyces species was highly supported and the intraspecific genetic variation was substantially lower than interspecific differences detected among species based on the ITS, nrLSU, and EF-1α loci. Ribosomal loci for all members of Superstratomyces were noticeably different from all fungal sequences available in GenBank. -
Five New Species of Hypoderma (Rhytismatales, Ascomycota) with a Key to Hypoderma Species Known from China
Nova Hedwigia 82 1—2 91—104 Stuttgart, February 2006 Five new species of Hypoderma (Rhytismatales, Ascomycota) with a key to Hypoderma species known from China by Cheng-Lin Hou and Meike Piepenbring* Botanisches Institut, J. W. Goethe-Universität Frankfurt am Main, 60054 Frankfurt/M., Germany With 32 figures Hou, C.-L. & M. Piepenbring (2006): Five new species of Hypoderma (Rhytismatales, Ascomycota) with a key to Hypoderma species known from China. - Nova Hedwigia 82: 91-104. Abstract: Five new species of Hypoderma are described from China. They are Hypoderma berberidis on living prickles of Berberis jamesiana, H. cuspidatum on twigs of Rhododendron sp., H. linderae on leaves of Lindera glauca, H. shiqii on twigs of Rhododendron sp., and H. smilacicola on leaves of Smilax bracteata. They differ from known species mainly by the shape and position of their ascomata as well as characteristics of ascospores. A key to nine Hypoderma species known for China is provided. Key words: Berberidaceae, Ericaceae, Lauraceae, morphology, Rhytismataceae, Smilacaceae, taxonomy. Introduction With more than 30 species, Hypoderma is the third largest genus of the Rhytismatales, following Lophodermium and Coccomyces. The genus Hypoderma is separated from Lophodermium based on characteristics of asci and ascospores. Species of Hypoderma have more or less clavate asci and ellipsoid to clavate ascospores while those of Lophodermium have cylindrical asci and filiform ascospores (Cannon & Minter 1986, Darker 1967, Powell 1974). The long-standing nomenclatural problem concerning the generic name of Hypoderma was solved by Cannon & Minter (1983). Powell (1974) contributed a monograph on species of Hypoderma worldwide and recognized eight species. -
Phacidium Infestans) in Container-Grown Norway Spruce Seedlings
BALTIC FORESTRY ARTIFICIAL INFECTION AND DEVELOPMENT OF SNOW MOLD FUNGUS /.../ R.-L. PETÄISTÖ ET AL. Artificial Infection and Development of Snow Mold Fungus (Phacidium infestans) in Container-grown Norway Spruce Seedlings RAIJA-LIISA PETÄISTÖ*1, ARJA LILJA2 AND JARKKO HANTULA2 1 Finnish Forest Research Institute, Suonenjoki Research Unit, 77600 Suonenjoki, Finland, 2 Finnish Forest Research Institute, Vantaa Research Unit, PO Box 18, 01301 Vantaa, Finland. *Corresponding author. E-mail: [email protected] Petäistö, R.-L., Lilja, A. and Hantula, J. 2013. Artificial Infection and Development of Snow Mold Fungus (Phacidium infestans) in Container-grown Norway Spruce Seedlings. Baltic Forestry 19(1): 3138. Abstract Phacidium infestans causes common snow mold in Scots pine (Pinus sylvestris L.), its main host in Finland. Recently, a mycelial web similar to that occurring on pine has been observed on Norway spruce (Picea abies L.) seedlings in some forest nurseries of Finland. In this study, we showed that Ph. infestans can cause snow mold in container seedlings of Norway spruce exposed to treatments that simulated natural infection by ascospores borne on Scots pine saplings. In the following spring after infection, inoculated seedlings stored in the freezer (-3 °C) were generally more diseased than those stored outdoors during the 2006/2007 winter, suggesting that Ph. infestans does not require snow cover to develop on spruce seedlings. Diseased needles were grey-green in early spring. After death, diseased needles soon became yellow- brown or grey-brown and seedlings often died. In contrast to the disease in Scots pine of the same age, infected Norway spruce needles were dropped mainly during the summer of 2007.