A Silicified Carboniferous Lycopsid Forest in the Colorado Rocky
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Gene Expression Data Support the Hypothesis That Isoetes Rootlets Are True Roots and Not Modifed Leaves Alexander J
www.nature.com/scientificreports OPEN Gene expression data support the hypothesis that Isoetes rootlets are true roots and not modifed leaves Alexander J. Hetherington1,2, David M. Emms1, Steven Kelly1 & Liam Dolan1,3* Rhizomorphic lycopsids are the land plant group that includes the frst giant trees to grow on Earth and extant species in the genus Isoetes. Two mutually exclusive hypotheses account for the evolution of terminal rooting axes called rootlets among the rhizomorphic lycopsids. One hypothesis states that rootlets are true roots, like roots in other lycopsids. The other states that rootlets are modifed leaves. Here we test predictions of each hypothesis by investigating gene expression in the leaves and rootlets of Isoetes echinospora. We assembled the de novo transcriptome of axenically cultured I. echinospora. Gene expression signatures of I. echinospora rootlets and leaves were diferent. Furthermore, gene expression signatures of I. echinospora rootlets were similar to gene expression signatures of true roots of Selaginella moellendorfi and Arabidopsis thaliana. RSL genes which positively regulate cell diferentiation in roots were either exclusively or preferentially expressed in the I. echinospora rootlets, S. moellendorfi roots and A. thaliana roots compared to the leaves of each respective species. Taken together, gene expression data from the de-novo transcriptome of I. echinospora are consistent with the hypothesis that Isoetes rootlets are true roots and not modifed leaves. Te frst giant (> 50 m) trees to grow on Earth, the arborescent clubmosses, were tethered to the ground by rooting structures termed stigmarian systems whose homology has been debated for more than 150 years1–9. Stigmarian rooting systems consisted of two components, a central axis (rhizomorph) on which developed large numbers of fne axes (rootlets). -
Chapter 2 Paleozoic Stratigraphy of the Grand Canyon
CHAPTER 2 PALEOZOIC STRATIGRAPHY OF THE GRAND CANYON PAIGE KERCHER INTRODUCTION The Paleozoic Era of the Phanerozoic Eon is defined as the time between 542 and 251 million years before the present (ICS 2010). The Paleozoic Era began with the evolution of most major animal phyla present today, sparked by the novel adaptation of skeletal hard parts. Organisms continued to diversify throughout the Paleozoic into increasingly adaptive and complex life forms, including the first vertebrates, terrestrial plants and animals, forests and seed plants, reptiles, and flying insects. Vast coal swamps covered much of mid- to low-latitude continental environments in the late Paleozoic as the supercontinent Pangaea began to amalgamate. The hardiest taxa survived the multiple global glaciations and mass extinctions that have come to define major time boundaries of this era. Paleozoic North America existed primarily at mid to low latitudes and experienced multiple major orogenies and continental collisions. For much of the Paleozoic, North America’s southwestern margin ran through Nevada and Arizona – California did not yet exist (Appendix B). The flat-lying Paleozoic rocks of the Grand Canyon, though incomplete, form a record of a continental margin repeatedly inundated and vacated by shallow seas (Appendix A). IMPORTANT STRATIGRAPHIC PRINCIPLES AND CONCEPTS • Principle of Original Horizontality – In most cases, depositional processes produce flat-lying sedimentary layers. Notable exceptions include blanketing ash sheets, and cross-stratification developed on sloped surfaces. • Principle of Superposition – In an undisturbed sequence, older strata lie below younger strata; a package of sedimentary layers youngs upward. • Principle of Lateral Continuity – A layer of sediment extends laterally in all directions until it naturally pinches out or abuts the walls of its confining basin. -
Wec01's SSSS Fossils Test 2019
wec01’s SSSS Fossils Test 2019 Team Name: _________________KEY________________ Team Number: ___KEY___ Team Members: ____________KEY____________, ____________KEY____________ This test consists of 18 stations with a total of 200 points. Each answer is worth one point except where specified otherwise. You are only given 2 ½ minutes with the specimens at each station, however you can work on any station’s questions at any time. Scoring Station 1: ___10___ / 10 Station 10: ___12___ / 12 Station 2: ___10___ / 10 Station 11: ____9___ / 9 Station 3: ___11___ / 11 Station 12: ___11___ / 11 Station 4: ___10___ / 10 Station 13: ___10___ / 10 Station 5: ___10___ / 10 Station 14: ___10___ / 10 Station 6: ____9___ / 9 Station 15: ___12___ / 12 Station 7: ____9___ / 9 Station 16: ____9___ / 9 Station 8: ___10___ / 10 Station 17: ___10___ / 10 Station 9: ____9___ / 9 Station 18: ___29___ / 29 Total: __200___ / 200 Team Number: _KEY_ Station 1: Dinosaurs (10 pt) 1. Identify the genus of specimen A Tyrannosaurus (1 pt) 2. Identify the genus of specimen B Stegosaurus (1 pt) 3. Identify the genus of specimen C Allosaurus (1 pt) 4. Which specimen(s) (A, B, or C) are A, C (1 pt) Saurischians? 5. Which two specimens (A, B, or C) lived at B, C (1 pt) the same time? 6. Identify the genus of specimen D Velociraptor (1 pt) 7. Identify the genus of specimen E Coelophysis (1 pt) 8. Which specimen (D or E) is commonly E (1 pt) found in Ghost Ranch, New Mexico? 9. Which specimen (A, B, C, D, or E) would D (1 pt) specimen F have been found on? 10. -
Pennsylvanian Exposures in the White Breast Recreation Area, Marion County, Iowa ______
Iowa Geological & Water Survey - GSI PENNSYLVANIAN EXPOSURES IN THE WHITE BREAST RECREATION AREA, MARION COUNTY, IOWA ___________________________________________________ John P. Pope, Adrian E. Goettemoeller, and Raymond R. Anderson Geological Society of Iowa Sponsored by the Department of Natural Resources Iowa Geological and Water Survey ______________________________________ April 20, 2013 Guidebook 91 i Guidebook 91 Cover photo shows the field trip stop area, Pennsylvanian exposure on the south-facing shore of the White Breast Recreation area at Lake Red Rock. ii Iowa Geological & Water Survey - GSI PENNSYLVANIAN EXPOSURES IN THE WHITE BREAST RECREATION AREA, MARION COUNTY, IOWA John P. Pope Northwest Missouri State University Dept. Geography/Geology 800 University Drive Maryville, MO 64468-6001 [email protected] Adrian E. Goettemoeller 712 York Court Plattsmouth, NE 68048 [email protected] Raymond R. Anderson Iowa Dept. Natural Resources Geological Survey Bureau Iowa City, IA 52242-1319 [email protected] with contributions by Greg A. Ludvigson Kansas Geological Survey 1930 Constant Avenue Lawrence, KS 66047-3724 [email protected] April 20, 2013 Geological Society of Iowa Guidebook 91 Geological Society of Iowa Sponsored by the Department of Natural Resources Iowa Geological and Water Survey Additional Copies of this Guidebook or other GSI Guidebooks May be Ordered from the IGWS Publication page at https://programs.iowadnr.gov/igspubs/listPubs.aspx iii Guidebook 91 iv Iowa Geological & Water Survey - GSI TABLE OF CONTENTS Pennsylvanian Exposures in the White Breast Recreation Area, Marion County, Iowa Introduction to the Field Trip Raymond R. Anderson ................................................................................................................ 1 References ........................................................................................................................... 1 Overview of Lake Red Rock and the White Breast Recreation Area Raymond R. -
The Largest Tropical Peat Mires in Earth History
Geological Society of America Special Paper 370 2003 Desmoinesian coal beds of the Eastern Interior and surrounding basins: The largest tropical peat mires in Earth history Stephen F. Greb William M. Andrews Cortland F. Eble Kentucky Geological Survey, University of Kentucky, Lexington, Kentucky 40506, USA William DiMichele Smithsonian Institution, National Museum of Natural History, Washington, D.C., USA C. Blaine Cecil U.S. Geological Survey, Reston, Virginia, USA James C. Hower Center for Applied Energy Research, University of Kentucky, Lexington, Kentucky, USA ABSTRACT The Colchester, Springfield, and Herrin Coals of the Eastern Interior Basin are some of the most extensive coal beds in North America, if not the world. The Colchester covers an area of more than 100,000 km^, the Springfield covers 73,500-81,000 km^, and the Herrin spans 73,900 km^. Each has correlatives in the Western Interior Basin, such that their entire regional extent varies from 116,000 km^to 200,000 km^. Correlatives in the Appalachian Basin may indicate an even more widespread area of Desmoinesian peatland development, although possibly sUghtly younger in age. The Colchester Coal is thin, but the Springfield and Herrin Coals reach thicknesses in excess of 3 m. High ash yields, dominance of vitrinite macerals, and abundant lycopsids suggest that these Desmoinesian coals were deposited in topogenous (groundwater fed) to solige- nous (mixed-water source) mires. The only modern mire complexes that are as wide- spread are northern-latitude raised-bog mires, but Desmoinesian -
The Carboniferous Evolution of Nova Scotia
Downloaded from http://sp.lyellcollection.org/ by guest on September 27, 2021 The Carboniferous evolution of Nova Scotia J. H. CALDER Nova Scotia Department of Natural Resources, PO Box 698, Halifax, Nova Scotia, Canada B3J 2T9 Abstract: Nova Scotia during the Carboniferous lay at the heart of palaeoequatorial Euramerica in a broadly intermontane palaeoequatorial setting, the Maritimes-West-European province; to the west rose the orographic barrier imposed by the Appalachian Mountains, and to the south and east the Mauritanide-Hercynide belt. The geological affinity of Nova Scotia to Europe, reflected in elements of the Carboniferous flora and fauna, was mirrored in the evolution of geological thought even before the epochal visits of Sir Charles Lyell. The Maritimes Basin of eastern Canada, born of the Acadian-Caledonian orogeny that witnessed the suture of Iapetus in the Devonian, and shaped thereafter by the inexorable closing of Gondwana and Laurasia, comprises a near complete stratal sequence as great as 12 km thick which spans the Middle Devonian to the Lower Permian. Across the southern Maritimes Basin, in northern Nova Scotia, deep depocentres developed en echelon adjacent to a transform platelet boundary between terranes of Avalon and Gondwanan affinity. The subsequent history of the basins can be summarized as distension and rifting attended by bimodal volcanism waning through the Dinantian, with marked transpression in the Namurian and subsequent persistence of transcurrent movement linking Variscan deformation with Mauritainide-Appalachian convergence and Alleghenian thrusting. This Mid- Carboniferous event is pivotal in the Carboniferous evolution of Nova Scotia. Rapid subsidence adjacent to transcurrent faults in the early Westphalian was succeeded by thermal sag in the later Westphalian and ultimately by basin inversion and unroofing after the early Permian as equatorial Pangaea finally assembled and subsequently rifted again in the Triassic. -
Retallack 2021 Coal Balls
Palaeogeography, Palaeoclimatology, Palaeoecology 564 (2021) 110185 Contents lists available at ScienceDirect Palaeogeography, Palaeoclimatology, Palaeoecology journal homepage: www.elsevier.com/locate/palaeo Modern analogs reveal the origin of Carboniferous coal balls Gregory Retallack * Department of Earth Science, University of Oregon, Eugene, Oregon 97403-1272, USA ARTICLE INFO ABSTRACT Keywords: Coal balls are calcareous peats with cellular permineralization invaluable for understanding the anatomy of Coal ball Pennsylvanian and Permian fossil plants. Two distinct kinds of coal balls are here recognized in both Holocene Histosol and Pennsylvanian calcareous Histosols. Respirogenic calcite coal balls have arrays of calcite δ18O and δ13C like Carbon isotopes those of desert soil calcic horizons reflecting isotopic composition of CO2 gas from an aerobic microbiome. Permineralization Methanogenic calcite coal balls in contrast have invariant δ18O for a range of δ13C, and formed with anaerobic microbiomes in soil solutions with bicarbonate formed by methane oxidation and sugar fermentation. Respiro genic coal balls are described from Holocene peats in Eight Mile Creek South Australia, and noted from Carboniferous coals near Penistone, Yorkshire. Methanogenic coal balls are described from Carboniferous coals at Berryville (Illinois) and Steubenville (Ohio), Paleocene lignites of Sutton (Alaska), Eocene lignites of Axel Heiberg Island (Nunavut), Pleistocene peats of Konya (Turkey), and Holocene peats of Gramigne di Bando (Italy). Soils and paleosols with coal balls are neither common nor extinct, but were formed by two distinct soil microbiomes. 1. Introduction and Royer, 2019). Although best known from Euramerican coal mea sures of Pennsylvanian age (Greb et al., 1999; Raymond et al., 2012, Coal balls were best defined by Seward (1895, p. -
Networks of Highly Branched Stigmarian Rootlets Developed on the First Giant Trees
Networks of highly branched stigmarian rootlets developed on the first giant trees Alexander J. Hetheringtona, Christopher M. Berryb, and Liam Dolana,1 aDepartment of Plant Sciences, University of Oxford, Oxford OX1 3RB, United Kingdom; and bSchool of Earth and Ocean Sciences, Cardiff University, Cardiff CF10 3AT, United Kingdom Edited by Peter R. Crane, Yale School of Forestry and Environmental Studies, New Haven, CT, and approved February 29, 2016 (received for review July 22, 2015) Lycophyte trees, up to 50 m in height, were the tallest in the that rootlet abscission resembled foliar abscission (17, 18), obser- Carboniferous coal swamp forests. The similarity in their shoot and vations on well-preserved fossil rhizomorph apices (30–32), and root morphology led to the hypothesis that their rooting (stig- their interpretation within a phylogenetic context (31, 33) led to a marian) systems were modified leafy shoot systems, distinct from complete revival of Schimper’s (27) modified shoot hypothesis. the roots of all other plants. Each consists of a branching main axis The only living relatives of these Carboniferous giant trees are covered on all sides by lateral structures in a phyllotactic arrange- small herbaceous plants in the genus Isoetes (24, 33–35). The rooting ment; unbranched microphylls developed from shoot axes, and system of Isoetes also consists of a rhizomorph meristem that de- largely unbranched stigmarian rootlets developed from rhizomorphs velops rootlets in a regular rhizotaxy (31, 36, 37). Aside from the axes. Here, we reexamined the morphology of extinct stigmarian reduction and modification of the rhizomorph, the rooting systems systems preserved as compression fossils and in coal balls from the of Isoetes and the tree lycopsids are morphologically similar (4, 19, Carboniferous period. -
Archaeopteris Is the Earliest Known Modern Tree
letters to nature seawater nitrate mapping systems for use in open ocean and coastal waters. Deep-Sea Res. I 43, 1763± zones as important sites for the subsequent development of lateral 1775 (1996). 26. Obata, H., Karatani, H., Matsui, M. & Nakayama, E. Fundamental studies for chemical speciation in organs; and wood anatomy strategies that minimize the mechani- seawater with an improved analytical method. Mar. Chem. 56, 97±106 (1997). cal stresses caused by perennial branch growth. Acknowledgements. We thank G. Elrod, E. Guenther, C. Hunter, J. Nowicki and S. Tanner for the iron Archaeopteris is thought to have been an excurrent tree, with a analyses and assistance with sampling, and the crews of the research vessels Western Flyer and New Horizon single trunk producing helically arranged deciduous branches for providing valuable assistance at sea. Funding was provided by the David and Lucile Packard 7 Foundation through MBARI and by the National Science Foundation. growing almost horizontally . All studies relating to the develop- ment of Archaeopteris support the view that these ephemeral Correspondence and requests for materials should be addressed to K.S.J. (e-mail: johnson@mlml. calstate.edu). branches arise from the pseudomonopodial division of the trunk apex8±11. Apical branching also characterizes all other contempora- neous non-seed-plant taxa including those that had also evolved an arborescent habit, such as lepidosigillarioid lycopsids and cladoxy- Archaeopteris is the earliest lalean ferns. This pattern, which can disadvantage the tree if the trunk apex is damaged, contrasts with the axillary branching knownmoderntree reported in early seed plants12. Analysis of a 4 m-long trunk from the Famennian of Oklahoma has shown that Archaeopteris may Brigitte Meyer-Berthaud*, Stephen E. -
PRISCUM the Newsletter of the Paleontological Society Volume 13, Number 2, Fall 2004
PRISCUM The Newsletter of the Paleontological Society Volume 13, Number 2, Fall 2004 Paleontological PRESIDENT’S Society Officers COLUMN: Inside... President Treasurer’s Report 2 William I. Ausich WE NEED YOU! GSA Information 2 President-Elect by William I. Ausich Reviews of PS- David Bottjer Sponsored Sessions 3 Past-President Why are you a member of The Paleontology Portal 5 Patricia H. Kelley The Paleontological Society? In PS Lecture Program 6 Secretary the not too distance past, the Books for Review 9 Roger D. K. Thomas only way to receive a copy of the Journal of Book Reviews 9 Treasurer Paleontology and Paleobiology was to pay your dues Conference Announce- and belong to the Society. I suppose one could Mark E. Patzkowsky have borrowed a copy from a friend or wander over ments 14 JP Managing Editors to the library. However, this was probably done Ann (Nancy) F. Budd with a heavy burden of guilt. Now, as we move Christopher A. Brochu into the digital age of scientific journal publishing, Jonathan Adrain one can have copies of the Journal of Paleontology and Paleobiology transmitted right to your Paleobiology Editors computer. It actually may arrive faster than the Tomasz Baumiller U.S. mail, you do not have to pay anything, and Robyn Burnham you do not even have to walk over to the library. Philip Gingerich No need for shelf space, no hassle, no dues, no Program Coordinator guilt – isn’t the Web great? The Web is great, but the Society needs dues-paying members in order Mark A. Wilson to continue to publish in paper, digitally, or both. -
Div B Fossils Answer Key
Div B Fossils Answer Key Name: . Date: . This is a 50 minute test. Each station is 2 minutes and 30 seconds. Keep in mind that questions that require Multiple answers will only be marked correct if ALL of the answers chosen/written are correct. /120 Station 1: 1) Brachiosaurus 2) Elmer S. Riggs 3) Diplodocus 4) Cañon City, Colorado 5) Patagotitan 6) Late Cretaceous Station 2: 7) Velociraptor 8) Spinosaurus 9) Plateosaurus 10) Ankylosaurus 11) Parasaurolophus 12) Dracorex Station 3: 13) Platystrophia 14) A, C, D, E 15) Composita 16) Late Devonian-Late Permian 17) Atrypa 18) All around the world Station 4: 19) .Calymene 20) Beautiful crescent, references the glabella 21) Eldredgeops (formerly Phacops) 22) 11 23) Elrathia 24) Four axial rings Station 5: 25) A - Thorax 26) B - Genal Angle 27) C - Cephalon 28) D - Eye 29) E - Pleural furrow 30) F - Librigena 31) G - Fulcrum Station 6: 32) Order Ammonoid 33) Cretaceous–Paleogene extinction even 34) True 35) Planispirals, helically, heteromorphs 36) F Station 7: 37) Class Crinoidea 38) A 39) A characteristic of a species, meaning that it has distinct male and female individual organisms. 40) Yes 41) 600 42) 40 m (130 ft) Station 8: 43) Belemnitella 44) 84.9–66.043 Ma 45) Europe and North America 46) Internal 47) North America 48) True Station 9: 49) Bothriolepis 50) "pitted scale" or "trench scale", either or both accepted 51) Bothriolepis, keyhole, mouth 52) Three 53) a superficial -
Inferring the Evolutionary Reduction of Corm Lobation in Isoëtes Using Bayesian Model- Averaged Ancestral State Reconstruction
UC Berkeley UC Berkeley Previously Published Works Title Inferring the evolutionary reduction of corm lobation in Isoëtes using Bayesian model- averaged ancestral state reconstruction. Permalink https://escholarship.org/uc/item/39h708p5 Journal American journal of botany, 105(2) ISSN 0002-9122 Authors Freund, Forrest D Freyman, William A Rothfels, Carl J Publication Date 2018-02-01 DOI 10.1002/ajb2.1024 Peer reviewed eScholarship.org Powered by the California Digital Library University of California RESEARCH ARTICLE BRIEF COMMUNICATION Inferring the evolutionary reduction of corm lobation in Isoëtes using Bayesian model- averaged ancestral state reconstruction Forrest D. Freund1,2, William A. Freyman1,2, and Carl J. Rothfels1 Manuscript received 26 October 2017; revision accepted 2 January PREMISE OF THE STUDY: Inferring the evolution of characters in Isoëtes has been problematic, 2018. as these plants are morphologically conservative and yet highly variable and homoplasious 1 Department of Integrative Biology, University of California, within that conserved base morphology. However, molecular phylogenies have given us a Berkeley, Berkeley, CA 94720-3140, USA valuable tool for testing hypotheses of character evolution within the genus, such as the 2 Authors for correspondence (e-mail: [email protected], hypothesis of ongoing morphological reductions. [email protected]) Citation: Freund, F. D., W. A. Freyman, and C. J. Rothfels. 2018. METHODS: We examined the reduction in lobe number on the underground trunk, or corm, by Inferring the evolutionary reduction of corm lobation in Isoëtes using combining the most recent molecular phylogeny with morphological descriptions gathered Bayesian model- averaged ancestral state reconstruction. American from the literature and observations of living specimens.