SUPPLEMENTARY MATERIAL

Table S1. Co-expressed of HNF1b genereted from GEO.

Rat Human LOC681714 A4GALT Abcb1 ABCA1 Abcb4 ABCA11P Abcc8 ABCA2 Abcg1 ABCA4 Abhd10 ABCC9 Abhd2 ABCD1 Abl1 ABT1 Abr ACE Abt1 ACTBL3 Abtb1 ACTN1 Acaa2 ACTR1A Acat1 ADAM30 Accn1 ADAMTS13 Accn1 ADAMTS6 Acsf3 ADCY1 Acss2 ADCY2 Actr1a ADCY9 Adam10 ADD3 Adam1a ADD3 Adamts9 ADH5 Adarb2 ADM2 Add2 ADNP Adora2a ADRA1B Adora2a AFF1 Adora2b AGFG2 Aff4 AGPAT2 Agpat6 AHCYL1 Agt AKAP1 Akap7 AKR1B10 Akap8l AKR7A2 Akr1c12 AKT3 Akr1cl2 ALDH1B1 Akt1s1 ALDOA Akt2 ALG9 Alcam ALMS1 Alpi ALOX5 Als2cr2 ALPP Amacr ALPPL2 Ambp ALPPL2 Amigo2 AMIGO3 Ankrd1 ANAPC5 Ankrd17 ANGEL2 Ankrd54 ANGPT4 Anks3 ANGPTL2 Ano6 ANKH Anp32e ANKRD1 Anxa7 ANKRD36B Anxa7 ANKRD6 Ap1m1 ANO3 Ap2a2 ANPEP Apbb1 AOAH Apob AP3D1 Apob AP3D1 Apoc1 APAF1 Aqp8 APBB2 Arf4 APLP2 Arf6 APOBEC3B Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Arhgap1 APOC4 Arhgef9 APOL1 Arl1 APOL6 Arl5a AQP3 Arl6ip6 ARAF Arnt2 ARF6 Arpc1b ARHGAP26 Arrb2 ARHGAP28 Asap1 ARHGAP6 Ascc2 ARID1A Ascl1 ARL1 Asns ARL4D Atf3 ARL6IP4 Atf5 ARNT Atf7ip ARPP-19 Atg3 ASIP Atp2a3 ASXL1 Atp2c1 ATG10 Atp5sl ATG4B Atp6v0e2 ATP1B1 Atp9b ATP2C1 Atp9b ATP5G2 Atp9b ATP6AP1 Atpbd4 ATP6V0A1 Auh ATP6V1D Baiap2 ATPAF2 Bat3 ATRX Baz1b AXIN1 Baz2b AZI1 Bbs2 AZI2 Bcas3 AZIN1 Bccip B3GAT3 Bche B4GALT4 Bcl2l13 B4GALT4 Bcs1l BAG1 Bhlhb8 BAGE Bik BAMBI Blcap BAP1 Brd1 BBC3 Brd7 BBS1 Brf2 BCKDK Brms1 BCL11A Brp16 BCOR Brunol4 BICD2 Brunol5 BMP8A Brwd2 BPHL Btbd6 BPTF Btg2 BRF1 Btrc BTAF1 Bub3 BTG3 C4bpa BTN2A1 Cab39 C10orf110 Cabc1 C15orf39 Cacna1b C15orf5 Cacna1g C16orf45 Cacnb2 C16orf67 Cacnb3 C16orf88 Cacng8 C18orf1 Cadps C19orf22 Cadps2 C19orf6 Camk2a C1GALT1C1 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Camk2b C1orf144 Camk2b C1orf50 Camk2d C1orf89 Camk2n1 C1QL1 Camkk2 C20orf29 Camkv C21orf2 Canx C2orf49 Capn9 C3orf60 Capza1 C3orf64 Car2 C6orf10 Car2 C6orf15 Car7 C6orf47 Cask C7orf25 Casp3 C8B Casp9 C8orf84 Casq2 C9orf86 Cav1 CA12 Cblb CA4 Cbln2 CABP1 Cbx3 CABP5 Cbx5 CADPS Cc2d1b CALB1 Ccbl1 CALCB Ccdc53 CAMK2B Ccdc86 CAMKK2 Ccl22 CAPN3 Ccnb2 CAPZB Cct6a CASKIN2 Cct8 CASP6 Cd151 CASP8 Cd164 CAT Cd2bp2 CBFA2T2 Cd38 CBL Cd52 CCBP2 Cd53 CCHCR1 Cdc2l6 CCL18 Cdc42bpb CCNC Cdc42ep3 CCR9 Cdc42ep4 CCRL1 Cdc42ep5 CCT3 Cdc42se1 CCT5 Cdca7l CCT8L2 Cdh2 CD163 Cdh2 CD164 Cdh22 CD1A Cdk5rap2 CD28 Cdkn2c CD300A Cdw92 CD33 Cebpd CD3D Cend1 CD58 Cesl1 CD86 Cggbp1 CD8A Chmp4b CD8B Chn2 CD93 Chpf CD99 Chrm3 CDA Chrna5 CDC123 Chrna6 CDC25C Chrne CDC42EP3 Ciao1 CDK2AP1 Cib1 CDK5RAP3 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Cipar1 CDK9 Cklf CDYL Ckmt2 CEACAM7 Clcc1 CEBPZ Cldn10 CELSR2 Clec11a CENPJ Clic1 CENPM Clic5 CEP170 Clk4 CEP250 Cltb CH25H Cml1 CHCHD7 Cndp1 CHD1L Cndp2 CHD8 Cnga3 CHRD Cnp CHRNA3 Cnp CHRNA3 Cntfr CHRNA6 Col10a1 CHRNB2 Col18a1 CHRNG Col1a2 CITED2 Copg CKLF Coro7 CLCC1 Cox17 CLCC1 Cox19 CLCN4 Cox8a CLDN18 Cpa2 CLIC4 Cpb1 CLINT1 Cpd CLIP1 Cpne9 CMAH Creg1 CNIH4 Creld2 CNKSR2 Crem COL13A1 Crhr1 COL14A1 Crhr1 COL1A1 Crlf2 COL4A3 Crot COL5A1 Crtap COL7A1 Cry2 COPS3 Csnk1g3 COPS7B Csrp2 CPT1A Ctbp2 CPVL Ctdsp1 CREBBP Cth CRISP1 Ctnnal1 CRYBG3 Ctsc CS Ctsc CSE1L Ctsh CSF3 Cul3 CSH1 Cux1 CSNK1A1 Cyb5a CSNK1D Cyfip2 CTNS Cyp11b1 CTRB1 Cyp2c13 CTRB2 Cyp3a9 CYLD Cyp4a1 CYLD Cyp4f1 CYP2C9 Cyp51 DACH1 Cyth2 DAXX Daam1 DBT Dcbld2 DBT Dci DCPS Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Dclk1 DDB1 Dclk1 DDEF1IT1 Ddah1 DDHD2 Ddit4 DDR1 Ddx31 DDT Ddx41 DDX19A Ddx46 DEFB4 Dhdds DENND3 Dhrs9 DES Dhx30 DHX29 Dhx9 DIDO1 Dip2a DLGAP2 Dlat DLK2 Dlg3 DNAI2 Dnaja2 DNALI1 Dnase2b DPP4 Dnm1l DPY19L1 Dnttip1 DPY19L1P1 Dock6 DSC2 Dock8 DSTYK Dpp3 DUS2L Dpy19l1 DVL2 Dspp DYNC2LI1 Dstn DYRK2 Dtd1 DYRK4 Dtnb DZIP1 Dusp16 DZIP3 Dusp26 EFNA5 Dusp6 EFS Dym EGFL7 Dync1li2 EGFR Dyrk2 EGFR E2f5 EIF3K E2f8 ELA3A Eef1d ELK3 Eef2k ELOVL6 Efha2 EML3 Egfl8 EMP2 Egr1 ENDOG Ehd4 ENPP2 Eif2ak1 ENTPD1 Eif2b2 EPB41L1 Eif3s6ip EPB41L2 Eif4a3 EPHA3 Eif4e3 EPHA3 Elfn2 EPM2AIP1 Elk3 EPS8 Ell2 ERBB4 Elovl5 ERCC6L Emcn EREG Emilin1 ERLIN1 Enc1 ERN2 Enpp1 ESD Eny2 ESR1 Ephx1 ESR2 Ewsr1 EVC Exoc5 EVPL Exoc6b EXOSC7 Ezr EXT1 F8a1 EZH1 Fahd1 F7 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Fam104a FABP1 Fam107b FAIM Fam136a FAM12A Fam148b FAM152A Fam171a1 FAM175B Fam171a1 FAM182A Fam45a FAM45A Fam89a FAM65B Fam92a1 FAR2 Fam96a FASTK Fam98b FAU Farp2 FBN2 Fat3 FBXO21 Fbxl11 FBXO9 Fbxo25 FBXW11 Fbxo32 FEN1 Fgf1 FERMT2 Fgf13 FGD6 Fgf14 FHL5 Fgf21 FKBP10 Fhit FKBP1A Fhl2 FKSG49 Filip1 FLJ10357 Fkbp1b FLRT3 Flot2 FLVCR2 Flt1 FMO3 Fnbp1 FMO5 Fntb FMR1 Folr1 FN1 Foxn3 FNTB Foxs1 FOXA2 Frmd8 FOXI1 Fstl3 FRMD4A Fxyd1 FUBP3 Fxyd2 FUSIP1 Fxyd5 FUT9 Fxyd6 FXYD6 Fyco1 FXYD7 Fzd1 FZR1 G0s2 GAB1 Gad2 GABARAP Gadd45a GABARAPL1 Gadd45gip1 GABARAPL3 Galnt1 GABRB1 Galnt11 GALNT1 Gart GARS Gca GAS6 Gch1 GAS7 Gclc GATA1 Gclc GCM1 Gcn1l1 GCNT2 Ggnbp1 GDF10 Ggnbp2 GDF9 Ghitm GDPD3 Ghitm GFI1B Ghr GFRA2 Gipc2 GGA2 Gjc2 GLYAT Glce GMEB1 Glp1r GML Glra1 GNAS Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Glra2 GNG4 Glrx1 GNMT Glt8d1 GOLGA7 Glud1 GOLGA9P Glud1 GOLPH3 Gnai2 GOT1 Gnaz GP1BA Gnb1 GPBP1L1 Gnpda1 GPR109B Gnpnat1 GPR183 Gorasp1 GPR39 Gpd2 GPX1 Gpr108 GRK6 Gpr149 GRM5 Gpr176 GRTP1 Gpr20 GSPT1 Gpr56 GSTA1 Gpr88 GTPBP1 Gpr98 GYPB Gprc5b HAB1 Grb14 HAB1 Grik2 HABP4 Gsta2 HADHA Gstm1 HAPLN2 Gstt2 HCG2P7 Gtf2h3 HERC4 Gtpbp2 HIST1H2BC Guca2b HLA-DPA1 Gucy2c HMG20B Gucy2g HMMR Gys2 HMP19 H13 HNRNPH1 H2afz HNRNPM H2-M3 HNRNPU H2-T23 HOXA11 H2-T24 HOXA5 Hagh HOXD1 Hand2 HOXD10 Hapln2 HS1BP3 Hba-a2 HSD11B2 Hbegf HSPA12A Hbg1 HSPD1 Hcca2 HTR3A Hdac10 HTR4 Hdhd2 ICA1 Hdhd3 ICAM1 Hdlbp ICMT Herc1 ID1 Herc3 ID4 Hibadh IDE Hip1 IDUA Hist1h1t IFNGR1 Hist2h2aa3 IFT52 Hist3h2a IGF2 Hk1 IGF2BP3 Hnf1a IGFBP2 Hnrnpab IGFBP5 Hnrnph3 IGHG1 Homer1 IGL@ Homer1 IL1F6 Hpgd IL1RL1 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Hrb2 IL1RN Hrpap20 IL27RA Hrsp12 IL8RA Hspa1l INSRR Hspc159 INTS5 Hspe1 INTS7 Htatip2 IQSEC1 Htr3b IREB2 Htr4 ITGAX Htr7 JAG1 Id2 JAG1 Idi1 JAKMIP2 Ifi27l JPH2 Ifi35 KCNAB3 Ifitm3 KCNC3 Ifngr1 KCNE1L Igf1r KCNG1 Igf2r KCNJ1 Igfbp3 KCTD9 Igfbp3 KDELR2 Igfbp7 KIAA0090 Igsf1 KIAA0090 Il12a KIAA0100 Il1r1 KIAA0368 Ing4 KIAA0391 Inpp1 KIAA0415 Inpp5k KIAA0776 Inppl1 KIF5B Ints10 KIR2DL4 Ipo4 KLF7 Iqcb1 KLHL20 Iqgap1 KLK13 Iqgap1 KLK14 Iqwd1 KLRA1 Irs2 KNTC1 Itga7 KPNA1 Itgb5 KPNA1 Itpkc KRCC1 Jak3 KRIT1 Jmjd6 KRT18P44 Jun KRT24 Jun KRT8P12 Jup L2HGDH Kbtbd4 LAMA1 Kcna4 LAMA2 Kcnc2 LAMA4 Kcng2 LAMB4 Kcnh2 LAMP2 Kcnj11 LAPTM5 Kcnj11 LASS2 Kcnj3 LDHA Kcnk3 LETMD1 Kcnma1 LGR5 Kctd15 LIG3 Kctd9 LILRA6 Kif3c LILRB1 Kif5c LIMA1 Kit LIMS1 Klc2 LMO7 Klf2 LMOD1 Klf6 LOC100129482 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Kng1 LOC100131713 Kpna1 LOC100132214 Kras LOC100132247 /// LOC23117 /// LOC440350 /// LOC641298 /// LOC730153 LOC642799 /// LOC729602 /// LOC729978 /// Krt7 LOC100132532 Lactb LOC100133696 Lactb2 LOC100134172 Lactb2 LOC284244 Lamc1 LOC376693 Laptm4b LOC390354 Lass5 LOC390612 Lats2 LOC441533 Lcn2 LOC644315 Ldlr LOC652821 Leng9 LOC728137 Lepr LOC728198 Leprot LOC728448 Leprotl1 LOC728855 Lgals3bp LOC91316 Lgals9 LOC93432 Lgr4 LPCAT4 Lin37 LPIN1 Lincr LPIN1 Lkap LPPR4 Llgl1 LRMP Lmo4 LRP6 Lmo4 LRRC61 LOC100188932 LRRFIP1 LOC100188932 LSM14A LOC100191012 LTF LOC286989 LUC7L2 LOC289378 M6PR LOC293103 MAEA LOC294446 MAGEF1 LOC295194 MAOA LOC296637 MAP2K5 LOC301128 MAP3K5 LOC360830 MAPK4 LOC361128 MAPK8IP2 LOC361635 MAPKAPK3 LOC362855 MAPT LOC362901 MASP1 LOC366431 MAZ LOC498145 MC1R LOC498996 MCAM LOC499235 MCL1 LOC500007 MCM4 LOC678741 MCOLN1 LOC679221 MED14 LOC679880 MED6 LOC680254 MEGF8 LOC680262 MFHAS1 LOC680367 MFN1 LOC681219 MGMT LOC681989 MGST3 LOC682888 MKNK1 LOC683548 MKRN3 LOC683674 MNAT1 LOC683897 MOBKL1B LOC683953 MOBKL1B LOC684270 MON2 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human LOC684556 MORF4L2 LOC684988 MRPL9 LOC684993 MRPS10 LOC684996 MRPS18B LOC685233 MRPS31 LOC686277 MRPS35 LOC686999 MSMB LOC687118 MSRB2 LOC687266 MSRB2 LOC687395 MSX2 LOC687538 MTAP LOC687656 MTAP LOC688173 MTDH LOC688257 MTHFR LOC688266 MTRF1 LOC688495 MUC16 LOC689994 MUC2 LOC690728 MYCBP LOC690745 MYL4 LOC691431 MYL4 LOC691504 MYO18A Lphn2 MYO1B Lpl MYO1B Lrba MYO5A Lrpap1 MYO9B Lrrc42 N4BP2L1 Lrrc49 NAAA Lrrc56 NADK Lsm10 NADK Lsm12 NARFL Lypla2 NARS2 Lyrm1 NAT10 Lysmd2 NAT6 Lzic NBEA Lztfl1 NDST2 Mafb NDUFA6 Maged2 NDUFB2 Magi3 NDUFS1 Mal2 NEBL Mamdc4 NEDD4 Man1b1 NEFL Man2a1 NET1 Man2b1 NEURL Map1lc3b NF1 Map2 NF1 Map2k6 NFATC1 Map3k8 NFRKB Map4k4 NFYC Mapk10 NID1 Mapre3 NIF3L1 Mapt NLE1 Mark4 NME6 Masp1 NOD2 Mast3 NOL6 Mast3 NOP56 Mast4 NPHP1 Max NPHP4 Mbnl2 NQO2 Mbnl2 NR4A1 Mecr NR4A2 Med13 NRP1 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Med15 NUMA1 Med19 NUMB Med25 NUP160 Mef2d NUP160 Met NUP210 Mfn2 NUP43 Mfsd2 NUP50 Mfsd9 OBFC1 MGC112830 OCLN MGC124740 OGFOD2 MGC72560 OGFOD2 MGC72974 OR1F1 MGC94190 ORC5L Mid1ip1 OSGIN2 Mkks OSGIN2 Mll5 OSTM1 Mllt11 P2RY1 Mllt4 PADI4 Mme PAEP Mmp11 PAIP1 Mmrn1 PARD3 Mosc2 PARD6A Mospd3 PARK2 Mpdz PAWR Mras PBX1 Mrpl38 PCDH1 Mrpl49 PCDH17 Mrpl49 PCDHA10 Mrpl55 PCDHA6 Mrps18b PCDHB17 Mrs2 PCDHGA10 Msn PCM1 Msra PCSK6 Mtch2 PDCD2 Mtf1 PDE11A Mtmr6 PDE4DIP Mtss1 PDE4DIP Mxi1 PDK4 Mxi1 PDLIM5 Myeov2 PDLIM7 Myl6 PDPK1 Myo1e PDZD7 Myo1g PDZRN3 Myo6 PELI2 Myof PEX16 N4bp2l2 PFDN2 Nadk PGM3 Nap1l1 PHACTR2 Nap1l5 PHF8 Nat1 PHKA1 Nat1 /// Nat2 PHLDA1 Nat8b PHTF2 Nbn PIAS3 Nck2 PIGC Ncln PIK3C3 Ncor1 PIK3CG Ndrg1 PIK3R1 Ndst2 PITPNA Ndufv2 PITPNB Nedd9 PKD1 Nefl PLAC8 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Net1 PLCB2 Nf2 PLK4 Nfasc PMS2L1 Nfia PNPLA4 Nfib POGZ Nfkb1 POLDIP3 Nfkbia POLDIP3 Nfs1 POLG2 Ngdn POLR2A Ngfr POLR2A Nid2 POMT1 Nit1 PON1 Nkx6-1 POU2F3 Nmbr POU6F1 Nme7 PPARA Nnat PPIF Nog PPP1R10 Nol12 PPP2R5D Nola1 PPP2R5D Nolc1 PPP3CA Nolc1 PRDX6 Nos1 PRKRIR Nos1ap PRL Nosip PRO1880 Npal2 PROSC Nphs1 PROSC Nploc4 PRPF18 Npm1 PRPF18 Nptxr PRPF40A Nr1h2 PRTN3 Nr1h4 PSEN2 Nr4a2 PSMA1 Nr4a3 PSMA1 Nrp1 PSMC3IP Nrp1 PSMC4 Nrsn1 PSMG1 Nrxn2 PSPC1 Nrxn3 PTCD3 Nsf PTCRA Nsun4 PTER Nub1 PTGDS Nubp2 PTGES2 Nubpl PTMS Nudcd1 PTMS Numb PTP4A1 Nup85 PTPN3 Nupr1 PTPRC Ociad1 PTPRC Ocln PTPRN Odf2 PTRH2 Odf2 PVR Odz2 PXDN Olr1278 RAB15 Opcml RAB17 Otx1 RAB31 Oxr1 RAB36 P4ha1 RAB3GAP1 P4ha2 RAB9A P4ha2 RAD1 P4hb RAD17 Pacsin1 RAD51C Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Pafah1b1 RALBP1 Pafah1b3 RALGPS2 Palm RAP2A Palmd RAPGEF1 Pam RASA2 Papss1 RASGRF1 Pard3 RASGRP2 Pard3 RBBP7 Parvb RBM23 Pawr RBM25 Pax6 RBM7 Pbld RBMXL2 Pbx3 RBPMS Pcbp4 RDX Pcdhb12 REC8 Pcdhga1 RECQL Pcif1 REG1B Pcmt1 RERE Pcp4 RGS7 Pcsk1 RHAG Pcsk1 RHCE /// RHD Pcsk2 RIC3 Pde2a RIF1 Pde4b RIG Pde4d RND1 Pdlim5 RNF122 Pdlim7 RNF219 Pds5b RNF24 Pdx1 RNF8 Pdxp RNGTT Pdzk1 RNMTL1 Pdzk1ip1 RNPS1 Perp ROBO3 Pfdn1 RP5-886K2.1 Pfkfb1 RPA3 Pfkfb3 RPH3AL Pgs1 RPL26L1 Phf12 RPL27A Phka1 RPLP0 Phkg1 RPP25 Phtf2 RPP38 Phyhip RPRD1A Pi4ka RPS6KA2 Pi4kb RPUSD2 Pigp RRBP1 Pip RRBP1 Pip4k2a RRM1 Pklr RSL1D1 Pla2g4b RSRC2 Pla2g6 RTEL1 Plcb4 RTN1 Plekha1 RTN1 Plekha6 RUNX1 Plekhj1 RUNX1T1 Plekho1 RWDD1 Plk1 S100A8 Pls1 S100PBP Plxnb1 SAA4 Podn SAP30 Podxl2 SARDH Polb SCAND2 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Polr3d SCN11A Polr3e SCNN1A Pomgnt1 SCYL2 Pon2 SDHB Pou3f3 SDK2 Ppa2 SEC23B Ppap2b SECISBP2 Ppap2b SEMA4A Ppbp SENP7 Ppib SERPINB13 Ppm1l SERPINB2 Ppp2r5b SERPIND1 Ppp3r2 SET Ppp4r2 SET Ppt1 SETD5 Pqcp SETD6 Prdm2 SETX Prdx4 SF1 Prep SFN Prkcd SFRS15 Prkd3 SFRS2 Prl3d4 SFRS7 Prnp SFTPB Prpf19 SGK2 Prpf8 SGSM3 Prph SH2D1A Prps2 SH3BP2 Prr6 SH3GL3 Prss23 SHARPIN Prtfdc1 SHH Psat1 SHPK Psen1 SIDT1 Psmb1 SIGLEC7 Psmb9 SKIV2L2 Psmd11 SLC12A5 Psmd6 SLC13A1 Psmg2 SLC14A2 Psmg4 SLC1A1 Ptdss2 SLC1A5 Pten SLC22A7 Pter SLC25A14 Ptgds2 SLC25A5 Ptger3 SLC28A2 Pthlh SLC2A11 Ptk2 SLC2A5 Ptp4a2 SLC30A10 Ptpn12 SLC30A3 Ptpn13 SLC33A1 Ptprc SLC38A1 Ptprz1 SLC5A4 Ptrh2 SLC6A15 Pycs SLC9A3R2 Pzp SLTM Qars SMAD1 Qk SMARCA1 Rab11a SMARCA5 Rab11a SMARCC1 Rab18 SMU1 Rab23 SNAPC5 Rab27a SNRPA1 Rab27b SNRPF Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Rab31 SNX1 Rab3a SNX15 Rab3c SNX19 Rab3ip SNX24 Rad54l2 SNX27 Rai1 SNX3 Ranbp10 SNX4 Rap1gap SNX5 Rapgef1 SOCS6 Raph1 SOX12 Rasgrp1 SOX2 Rasgrp1 SOX4 Rasgrp2 SOX9 Rasgrp3 SP110 Rasgrp4 SP140 Rbm27 SPAST Rbm39 SPATA2 Rbm39 SPIN2A Rcan1 SPINK4 Rcbtb1 SRI rCG_61032 SRP19 Reep1 SSFA2 Reep3 SSR1 Retsat SSX2IP Rexo2 SSX3 RGD1304693 STAG3L4 RGD1305274 STAU1 RGD1305350 STEAP3 RGD1305441 STK17A RGD1305441 STK25 RGD1305455 STOM RGD1305508 STOML1 RGD1305593 STRN3 RGD1305628 STS RGD1306058 STX17 RGD1306534 STX18 RGD1306917 SUCLG2 RGD1307399 TACC1 RGD1307682 TACR1 RGD1307722 TADA3L RGD1307789 TAF5L RGD1307844 TAF9 RGD1307935 TANK RGD1308290 TAOK2 RGD1308917 TAS2R14 RGD1309079 TBC1D13 RGD1309198 TBC1D2B RGD1309198 TBC1D8 RGD1309228 TBC1D9 RGD1309313 TBPL1 RGD1309492 TCEB2 RGD1309779 TCF25 RGD1309823 TCF25 RGD1309829 TCP11L1 RGD1309888 TDG RGD1310224 TDRD1 RGD1310271 TFAP2B RGD1310358 TFDP1 RGD1310414 TGM1 RGD1310453 TGOLN2 RGD1310606 TIMM17A Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human RGD1310660 TIMM44 RGD1311122 TKTL1 RGD1311251 TKTL1 RGD1311260 TLE1 RGD1359191 TLR5 RGD1559885 TLX1 RGD1560755 TM4SF1 RGD1561067 TMC6 RGD1561090 TMCO1 RGD1561090 TMED1 RGD1561797 TMEM110 RGD1561817 TMEM160 RGD1561940 TMEM183A RGD1562284 TMEM214 RGD1562747 TMEM87A RGD1563533 TNFAIP3 RGD1563612 TNFRSF10C RGD1563892 TNFRSF25 RGD1564778 TNPO1 RGD1565146 TOLLIP RGD1565149 TOP1 RGD1565184 TOP2A RGD1565192 TOP3A RGD1565616 TOX4 RGD1566215 TP63 RGD708545 TPD52 Rgnef TPM2 Rgs8 TRA2A Rhbdf1 TRAFD1 Rhoq TRAPPC9 Rhov TREX2 Rims2 TRIM2 Rkhd2 TRIM28 Rmnd5a TRIM34 Rnaseh2a TRIM44 Rnasel TRIM49 Rnasen TRPV1 Rnf128 TSKS Rnf26 TTK Rnf34 TTPA Rnf5 TTRAP Robo2 TTTY15 Rock2 TUBD1 Rod1 TUBGCP4 Rpap3 TUFM Rpl30 TULP4 Rpl39 TXNDC3 Rpl7l1 TXNDC4 Rpo1-3 TYROBP Rps6ka1 UBA6 Rraga UBA7 Rreb1 UBE2C Rrm2 UBE2D2 Rrp1b UBE2D3 Rrp7a UBL4A Rsbn1 UBN1 RT1-Aw2 UBOX5 Rtn4 UCHL5 Rtn4r UFSP2 Rtn4rl1 UGT2B15 Rufy1 UQCRQ Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Rup2 UROD Rwdd1 USO1 Rxra USP53 Ryr1 UTP20 S100a10 VCAM1 S100g VCAN Sacm1l VEGFA Sae1 VEGFB Samd4b VPRBP Sart1 VPS28 Sc5dl WDHD1 Scamp2 WDR13 Scarf2 WDR42A Scfd1 WDR60 Scg3 WIPF1 Scgb1a1 WIPI1 Scn3b WNT5B Scrib WWP1 Sec11c XIAP Sec13 XPA Sec24d XPNPEP1 Sel1l XPNPEP3 Sema3c XRCC5 Sema4a YKT6 Sema6b YY1 Sepx1 ZC3H12A Serinc2 ZC3H7B Serinc3 ZFC3H1 Serpina6 ZFP37 Serpinb9 ZFR2 Serpine2 ZMIZ2 Sert1 ZMYND8 Setd3 ZNF141 Sf3b2 ZNF184 Sf3b2 ZNF185 Sf3b4 ZNF223 Sfrs10 ZNF26 Sfrs16 ZNF335 Sftpb ZNF440 Sgip1 ZNF460 Sgk493 ZNF528 Sgsm3 ZNF550 Sh2b2 ZNF589 Sh2d3c ZNF611 Sh3bp5 ZNF665 Shank2 ZNF93 Shc2 ZSCAN12 Siah1a Sin3b Sirt2 Slc10a1 Slc10a2 Slc14a2 Slc15a2 Slc16a6 Slc1a1 Slc1a6 Slc22a2 Slc23a2 Slc24a3 Slc24a3 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Slc26a3 Slc30a5 Slc30a7 Slc35a4 Slc38a5 Slc39a1 Slc3a1 Slc40a1 Slc44a4 Slc45a4 Slc5a5 Slc6a18 Slc6a5 Slc6a6 Slc6a8 Slc6a9 Slc7a5 Slco3a1 Slco4a1 Slmap Smad5 Smarcal1 Smo Smpdl3b Smpdl3b Snca Snrpb Snrpn Snrpn Snx1 Snx27 Socs2 Sod2 Sorcs2 Sorcs3 Sord Sort1 Spag5 Spats2 Sphkap Spink3 Spire1 Spn Spon2 Spp1 Spr Spta1 Sqrdl Sqstm1 Sqstm1 Src Srf Srpk2 Srrm1 Ssbp1 Sspn St14 St8sia1 Star Stard7 Stat1 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Stc1 Stc1 Stim1 Stk39 Stom Stxbp1 Suds3 Surf4_predicted Sval2 Syncrip Synj1 Synpo2 Sypl1 Syt12 Syt5 Syt8 Syvn1 Tacr1 Tacr2 Tbrg4 Tead3 Tenc1 Tesc Tex19.2 Tff3 Tgif1 Them4 Thnsl2 Thoc7 Thop1 Thrap3 Timm17b Timm9 Tm2d1 Tm4sf4 Tmbim6 Tmcc2 Tmed2 Tmem106a Tmem110 Tmem140 Tmem141 Tmem164 Tmem168 Tmem185a Tmem189 Tmem199 Tmem208 Tmem218 Tmem222 Tmem50a Tmem55b Tmod2 Tmprss2 Tmsbl1 Tnfrsf1b Tnfrsf21 Tnfrsf4 Tnfrsf9 Tnfsf13 Tnip1 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Tomm6 Tox4 Tp53bp1 Tpbg Tpd52l1 Tpm1 Tpm3 Tpo1 Tra2a Traf3 Traf4 Trak2 Tram1 Trib2 Trim32 Trim35 Trim8 Trip12 Trmt1 Trpc4 Trpv1 Tshr Tspan6 Tsta3 Ttc39a Ttr Tubb3 Txndc12 Txnl1 Ubap1 Ubc Ubd Ube2d3 Ube2g1 Ubl3 Ubqln2 Uchl3 Ufd1l Ugcg Ugcgl1 Ugt2b Ugt2b36 Uqcrc2 Usp21 Usp3 Usp4 UST4r Vcl Vcsa2 Vdac3 Vdr Vegfa Vegfc Vegp1 Vldlr Vldlr Vps25 Vps33b Vtn Wars Wbp2 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S1. Continued.

Rat Human Wdr6 Wdr89 Wif1 Wnk1 Wt1 Yars Yipf1 Yrdc Zbed3 Zc3h10 Zc3h15 Zdhhc14 Zdhhc2 Zfand2a Zfand6 Zfp219 Zfp364 Zfp422 Zfp462 Zfp637 Zmynd11 Znf496 Znf498 Znf513 Znf574 Znf580 Znrf1

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S2. Common genes between the DDPC data and the findings of our previous meta-analysis.

ABCC4 ABCG2 ACACA ACVR2A AGR2 AKR1C3 AKT1 ALCAM AMACR ANXA1 ANXA2 AOF2 ATM BAG1 BCL2 BIN1 BMP6 CAV1 CCND1 CCR2 CD44 CDH1 CDH13 CFLAR CHI3L1 CHUK CLDN7 CLPTM1 CLU COPE COX6C CRISP3 CRK CSK CSNK2A1 CXCR4 CYP19A1 CYP3A4 CYP3A5 DDIT4 DDR1 DRG1 DVL1 EBAG9 EDNRA EGR1 ENG ENO1 ENTPD5 ERBB3 ERBB4 ESR1 EZH2 F1 F2R F2RL1 F3 FASN FGF2 FGG FHIT FHL2 Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S2. Continued.

FLT1 FOXA1 FOXO3 GAPDH GCNT1 GDF15 GJA1 GSTM3 GSTP1 HDAC1 HGF HIPK3 HNRNPA1 HPN HSD3B1 HSPB1 HSPD1 HYAL1 ID2 IFI16 IGFBP2 IGFBP4 IGFBP5 IKBKB IL2 IRS1 ITGA5 ITGA7 ITGB1 ITGB3 ITGB4 ITPR1 JARID1B JUN JUND JUP KLF6 KLK2 KLK3 LAMA5 LEF1 LGALS1 LGALS3 LPAR1 LPXN LSM1 MAL MAPK3 MCM7 MET MICAL2 MKI67 MSH3 MT3 MTA1 MYC NCOR2 NGF NPY1R NR4A1 PA2G4 PAWR Continued on next page

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br Table S2. Continued.

PHB PIK3CG PML PRKCD PRPF8 PRSS8 PTEN PTN PTOV1 RAD9A RAF1 RAP2A RARA RECK REPS2 RUVBL1 SCN9A SEC62 SHC1 SLC39A1 SLC43A1 SMAD3 SMARCA4 SNAI2 SPDEF SPINT1 SRD5A1 SRD5A2 SREBF1 SSTR2 ST14 STAT3 STAT6 SYNJ2 TBXA2R TFAP2A TGFB1I1 TGFBR2 TGFBR3 TIMP2 TIMP3 TLE3 TMPRSS2 TNK2 TPD52 TXNIP TYK2 USP2 VDR VIPR1 WDR77 ZFHX3 DDPC = Dragon database of genes implicated in prostate cancer.

Genetics and Molecular Research 12 (2): (2013) ©FUNPEC-RP www.funpecrp.com.br