Amino Acid Trp: the Far out Impacts of Host and Commensal Tryptophan Metabolism
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The Gut Microbiota and Inflammation
International Journal of Environmental Research and Public Health Review The Gut Microbiota and Inflammation: An Overview 1, 2 1, 1, , Zahraa Al Bander *, Marloes Dekker Nitert , Aya Mousa y and Negar Naderpoor * y 1 Monash Centre for Health Research and Implementation, School of Public Health and Preventive Medicine, Monash University, Melbourne 3168, Australia; [email protected] 2 School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane 4072, Australia; [email protected] * Correspondence: [email protected] (Z.A.B.); [email protected] (N.N.); Tel.: +61-38-572-2896 (N.N.) These authors contributed equally to this work. y Received: 10 September 2020; Accepted: 15 October 2020; Published: 19 October 2020 Abstract: The gut microbiota encompasses a diverse community of bacteria that carry out various functions influencing the overall health of the host. These comprise nutrient metabolism, immune system regulation and natural defence against infection. The presence of certain bacteria is associated with inflammatory molecules that may bring about inflammation in various body tissues. Inflammation underlies many chronic multisystem conditions including obesity, atherosclerosis, type 2 diabetes mellitus and inflammatory bowel disease. Inflammation may be triggered by structural components of the bacteria which can result in a cascade of inflammatory pathways involving interleukins and other cytokines. Similarly, by-products of metabolic processes in bacteria, including some short-chain fatty acids, can play a role in inhibiting inflammatory processes. In this review, we aimed to provide an overview of the relationship between the gut microbiota and inflammatory molecules and to highlight relevant knowledge gaps in this field. -
Advancing Clostridia to Clinical Trial: Past Lessons and Recent Progress
cancers Review Advancing Clostridia to Clinical Trial: Past Lessons and Recent Progress Alexandra M. Mowday 1,2, Christopher P. Guise 1,2, David F. Ackerley 2,3, Nigel P. Minton 4, Philippe Lambin 5, Ludwig J. Dubois 5, Jan Theys 5, Jeff B. Smaill 1,2 and Adam V. Patterson 1,2,* 1 Translational Therapeutics Team, Auckland Cancer Society Research Centre, School of Medical Sciences, University of Auckland, Auckland 1023, New Zealand; [email protected] (A.M.M.); [email protected] (C.P.G.); [email protected] (J.B.S.) 2 Maurice Wilkins Centre for Molecular Biodiscovery, School of Biological Sciences, University of Auckland, Auckland 1023, New Zealand 3 School of Biological Sciences, Victoria University of Wellington, Wellington 6140, New Zealand; [email protected] 4 The Clostridia Research Group, BBSRC/EPSRC Synthetic Biology Research Centre (SBRC) School of Life Sciences, University of Nottingham, Nottingham NG72RD, UK; [email protected] 5 Maastro (Maastricht Radiation Oncology), GROW School for Oncology and Development Biology, Maastricht University Medical Centre, 6200 MD Maastricht, The Netherlands; [email protected] (P.L.); [email protected] (L.J.D.); [email protected] (J.T.) * Correspondence: [email protected]; Tel.: +64-9-923-6941 Academic Editor: Gabi Dachs Received: 16 May 2016; Accepted: 22 June 2016; Published: 28 June 2016 Abstract: Most solid cancers contain regions of necrotic tissue. The extent of necrosis is associated with poor survival, most likely because it reflects aggressive tumour outgrowth and inflammation. Intravenously injected spores of anaerobic bacteria from the genus Clostridium infiltrate and selectively germinate in these necrotic regions, providing cancer-specific colonisation. -
Targeting the Microbiota-Gut-Brain Axis
Author’s Accepted Manuscript Targeting the Microbiota-Gut-Brain Axis: Prebiotics Have Anxiolytic and Antidepressant-like Effects and Reverse the Impact of Chronic Stress in Mice“Prebiotics for Stress-Related Disorders” Aurelijus Burokas, Silvia Arboleya, Rachel D. Moloney, Veronica L. Peterson, Kiera Murphy, Gerard Clarke, Catherine Stanton, Timothy G. www.elsevier.com/locate/journal Dinan, John F. Cryan PII: S0006-3223(17)30042-2 DOI: http://dx.doi.org/10.1016/j.biopsych.2016.12.031 Reference: BPS13098 To appear in: Biological Psychiatry Cite this article as: Aurelijus Burokas, Silvia Arboleya, Rachel D. Moloney, Veronica L. Peterson, Kiera Murphy, Gerard Clarke, Catherine Stanton, Timothy G. Dinan and John F. Cryan, Targeting the Microbiota-Gut-Brain Axis: Prebiotics Have Anxiolytic and Antidepressant-like Effects and Reverse the Impact of Chronic Stress in Mice“Prebiotics for Stress-Related Disorders”, Biological Psychiatry, http://dx.doi.org/10.1016/j.biopsych.2016.12.031 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting galley proof before it is published in its final citable form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. Targeting the Microbiota-Gut-Brain Axis: Prebiotics Have Anxiolytic and Antidepressant-like Effects and Reverse the Impact of Chronic Stress in Mice Aurelijus Burokas1, Silvia Arboleya1,2*, Rachel D. Moloney1*, Veronica L. -
Analysis of Human Gut Microbiota Composition Associated to the Presence of Commensal and Pathogen Microorganisms in Côte D’Ivoire
microorganisms Article Analysis of Human Gut Microbiota Composition Associated to the Presence of Commensal and Pathogen Microorganisms in Côte d’Ivoire Veronica Di Cristanziano 1,*,† , Fedja Farowski 2,3,† , Federica Berrilli 4,† , Maristella Santoro 4, David Di Cave 4, Christophe Glé 5, Martin Daeumer 6, Alexander Thielen 6, Maike Wirtz 1, Rolf Kaiser 1, Kirsten Alexandra Eberhardt 7,8 , Maria J. G. T. Vehreschild 2,3,9 and Rossella D’Alfonso 5,10 1 Institute of Virology, Faculty of Medicine and University Hospital of Cologne, University of Cologne, 50935 Cologne, Germany; [email protected] (M.W.); [email protected] (R.K.) 2 Department I of Internal Medicine, Faculty of Medicine and University Hospital of Cologne, University of Cologne, 50937 Cologne, Germany; [email protected] (F.F.); [email protected] (M.J.G.T.V.) 3 Department of Internal Medicine, Infectious Diseases, University Hospital Frankfurt, Goethe University Frankfurt, 60590 Frankfurt am Main, Germany 4 Department of Clinical Sciences and Translational Medicine, University of Rome Tor Vergata, 00133 Rome, Italy; [email protected] (F.B.); [email protected] (M.S.); [email protected] (D.D.C.) 5 Centre Don Orione Pour Handicapés Physiques, Bonoua BP 21, Côte d’Ivoire; [email protected] (C.G.); [email protected] (R.D.) 6 Seq-IT GmbH & Co KG, 67655 Kaiserslautern, Germany; [email protected] (M.D.); [email protected] (A.T.) Citation: Di Cristanziano, V.; 7 Department of Tropical Medicine, Bernhard Nocht Institute for Tropical Medicine & I. Department of Farowski, F.; Berrilli, F.; Santoro, M.; Medicine, University Medical Center Hamburg-Eppendorf, 20359 Hamburg, Germany; [email protected] Di Cave, D.; Glé, C.; Daeumer, M.; 8 Institute for Transfusion Medicine, University Medical Center Hamburg-Eppendorf, Thielen, A.; Wirtz, M.; Kaiser, R.; et al. -
Clostridium Sporogenes
(R)-Indolelactyl-CoA dehydratase, the key enzyme of tryptophan reduction to indolepropionate in Clostridium sporogenes Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. Nat.) dem Fachbereich Biologie der Philipps-Universität Marburg vorgelegt von Diplom-Chemikerin Huan Li aus JiLin VR. China Marburg/Lahn, 2014 Die Untersuchungen zur vorliegenden Arbeit wurden von September 2010 bis Dezember 2013 im Max-Planck-Institut für terrestrische Mikrobiologie, Marburg und im Laboratorium für Mikrobiologie, Fachbereich Biologie, der Philipps-Universität Marburg (Hochschulkennziffer: 1180) unter der Leitung von Prof. Dr. Wolfgang Buckel durchgeführt. Vom Fachbereich Biologie der Philipps-Universität Marburg als Dissertation am angenommen. Erstgutachter: Prof. Dr. Wolfgang Buckel Zweitgutachter: Prof. Dr. Johann Heider Tag der mündlichen Prüfung am: Für den gläubigen Menschen steht Gott am Anfang, für den Wissenschaftler am Ende aller seiner Überlegungen. Max Planck 献给最亲爱的爸爸妈妈 Index Zusammenfassung 1 Summary 2 Introduction 3 1. The role of gastrointestinal microbiota metabolites ........................................................... 3 2. Fermentation of amino acids and Stickland-reaction ......................................................... 5 3. Clostridium sporogenes ........................................................................................................... 7 4. 2-Hydroxyacyl-CoA dehydratases and the unusual radical H2O-elimination ................. 9 5. Family Ш CoA-transferases ............................................................................................... -
The Human Gut Microbiota: a Dynamic Interplay with the Host from Birth to Senescence Settled During Childhood
Review nature publishing group The human gut microbiota: a dynamic interplay with the host from birth to senescence settled during childhood Lorenza Putignani1, Federica Del Chierico2, Andrea Petrucca2,3, Pamela Vernocchi2,4 and Bruno Dallapiccola5 The microbiota “organ” is the central bioreactor of the gastroin- producing immunological memory (2). Indeed, the intestinal testinal tract, populated by a total of 1014 bacteria and charac- epithelium at the interface between microbiota and lymphoid terized by a genomic content (microbiome), which represents tissue plays a crucial role in the mucosa immune response more than 100 times the human genome. The microbiota (2). The IS ability to coevolve with the microbiota during the plays an important role in child health by acting as a barrier perinatal life allows the host and the microbiota to coexist in a against pathogens and their invasion with a highly dynamic relationship of mutual benefit, which consists in dispensing, in modality, exerting metabolic multistep functions and stimu- a highly coordinated way, specific immune responses toward lating the development of the host immune system, through the biomass of foreign antigens, and in discriminating false well-organized programming, which influences all of the alarms triggered by benign antigens (2). The failure to obtain growth and aging processes. The advent of “omics” technolo- or maintain this complex homeostasis has a negative impact gies (genomics, proteomics, metabolomics), characterized by on the intestinal and systemic health (2). Once the balance complex technological platforms and advanced analytical and fails, the “disturbance” causes the disease, triggering an abnor- computational procedures, has opened new avenues to the mal inflammatory response as it happens, for example, for the knowledge of the gut microbiota ecosystem, clarifying some inflammatory bowel diseases in newborns (2). -
Gut Microbiota Modulation Accounts for the Neuroprotective Properties of Anthocyanins
www.nature.com/scientificreports OPEN Gut microbiota modulation accounts for the neuroprotective properties of anthocyanins Received: 27 March 2018 Cláudia Marques1,2, Iva Fernandes 3, Manuela Meireles1,4, Ana Faria1,2,5, Accepted: 12 July 2018 Jeremy P. E. Spencer6, Nuno Mateus3 & Conceição Calhau1,2 Published: xx xx xxxx High-fat (HF) diets are thought to disrupt the profle of the gut microbiota in a manner that may contribute to the neuroinfammation and neurobehavioral changes observed in obesity. Accordingly, we hypothesize that by preventing HF-diet induced dysbiosis it is possible to prevent neuroinfammation and the consequent neurological disorders. Anthocyanins are favonoids found in berries that exhibit anti-neuroinfammatory properties in the context of obesity. Here, we demonstrate that the blackberry anthocyanin-rich extract (BE) can modulate gut microbiota composition and counteract some of the features of HF-diet induced dysbiosis. In addition, we show that the modifcations in gut microbial environment are partially linked with the anti-neuroinfammatory properties of BE. Through fecal metabolome analysis, we unravel the mechanism by which BE participates in the bilateral communication between the gut and the brain. BE alters host tryptophan metabolism, increasing the production of the neuroprotective metabolite kynurenic acid. These fndings strongly suggest that dietary manipulation of the gut microbiota with anthocyanins can attenuate the neurologic complications of obesity, thus expanding the classifcation of psychobiotics to anthocyanins. Te incidence of neurodegenerative diseases, such as Alzheimer’s and Parkinson’s diseases has been increasing as global population gets older. Te World Health Organization (WHO) predicts that by 2040, neurodegener- ative diseases will overtake cancer to become the second leading cause of death afer cardiovascular disease1. -
A Distinct Faecal Microbiota and Metabolite Profile Linked to Bowel Habits in Patients with Irritable Bowel Syndrome
cells Article A Distinct Faecal Microbiota and Metabolite Profile Linked to Bowel Habits in Patients with Irritable Bowel Syndrome Bani Ahluwalia 1,2,† , Cristina Iribarren 1,3,† , Maria K. Magnusson 1, Johanna Sundin 1, Egbert Clevers 3,4, Otto Savolainen 5, Alastair B. Ross 5,6, Hans Törnblom 3, Magnus Simrén 3,7 and Lena Öhman 1,* 1 Department of Microbiology and Immunology, Institute of Biomedicine, University of Gothenburg, 405 30 Gothenburg, Sweden; [email protected] (B.A.); [email protected] (C.I.); [email protected] (M.K.M.); [email protected] (J.S.) 2 Calmino Group AB, Research and Development, 413 46 Gothenburg, Sweden 3 Department of Molecular and Clinical Medicine, Institute of Medicine, University of Gothenburg, 413 45 Gothenburg, Sweden; [email protected] (E.C.); [email protected] (H.T.); [email protected] (M.S.) 4 GI Motility and Sensitivity Research Group, Translational Research Centre for Gastrointestinal Disorders (TARGID), KU Leuven, 3000 Leuven, Belgium 5 Chalmers Mass Spectrometry Infrastructure, Department of Biology and Biological Engineering, Chalmers University of Technology, 412 96 Gothenburg, Sweden; [email protected] (O.S.); [email protected] (A.B.R.) 6 Proteins and Metabolites Team, AgResearch, Lincoln 7674, New Zealand 7 Center for Functional Gastrointestinal and Motility Disorders, Division of Gastroenterology & Hepatology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA Citation: Ahluwalia, B.; Iribarren, C.; * Correspondence: [email protected]; Tel.: +46-31-786-6214 † These authors equally contributed to this work. Magnusson, M.K.; Sundin, J.; Clevers, E.; Savolainen, O.; Ross, A.B.; Törnblom, H.; Simrén, M.; Öhman, L. -
Phosphate, Microbiota and CKD
nutrients Review Phosphate, Microbiota and CKD Chiara Favero 1, Sol Carriazo 1,2, Leticia Cuarental 1,2, Raul Fernandez-Prado 1,2, Elena Gomá-Garcés 1, Maria Vanessa Perez-Gomez 1,2, Alberto Ortiz 1,2,*,† , Beatriz Fernandez-Fernandez 1,2,*,† and Maria Dolores Sanchez-Niño 1,2,3,*,† 1 Department of Nephrology and Hypertension, IIS-Fundacion Jimenez Diaz, Universidad Autonoma de Madrid, Av Reyes Católicos 2, 28040 Madrid, Spain; [email protected] (C.F.); [email protected] (S.C.); [email protected] (L.C.); [email protected] (R.F.-P.); [email protected] (E.G.-G.); [email protected] (M.V.P.-G.) 2 Red de Investigacion Renal (REDINREN), Av Reyes Católicos 2, 28040 Madrid, Spain 3 School of Medicine, Department of Pharmacology and Therapeutics, Universidad Autonoma de Madrid, 28049 Madrid, Spain * Correspondence: [email protected] (A.O.); [email protected] (B.F.-F.); [email protected] (M.D.S.-N.) † These authors contributed equally to this work. Abstract: Phosphate is a key uremic toxin associated with adverse outcomes. As chronic kidney dis- ease (CKD) progresses, the kidney capacity to excrete excess dietary phosphate decreases, triggering compensatory endocrine responses that drive CKD-mineral and bone disorder (CKD-MBD). Eventu- ally, hyperphosphatemia develops, and low phosphate diet and phosphate binders are prescribed. Recent data have identified a potential role of the gut microbiota in mineral bone disorders. Thus, parathyroid hormone (PTH) only caused bone loss in mice whose microbiota was enriched in the Th17 cell-inducing taxa segmented filamentous bacteria. Furthermore, the microbiota was required Citation: Favero, C.; Carriazo, S.; for PTH to stimulate bone formation and increase bone mass, and this was dependent on bacterial Cuarental, L.; Fernandez-Prado, R.; Gomá-Garcés, E.; Perez-Gomez, M.V.; production of the short-chain fatty acid butyrate. -
Gut Microbiota Composition Reflects Disease Severity and Dysfunctional
Gut microbiota Original research Gut microbiota composition reflects disease severity Gut: first published as 10.1136/gutjnl-2020-323020 on 11 January 2021. Downloaded from and dysfunctional immune responses in patients with COVID-19 Yun Kit Yeoh ,1,2 Tao Zuo ,2,3,4 Grace Chung- Yan Lui,3,5 Fen Zhang,2,3,4 Qin Liu,2,3,4 Amy YL Li,3 Arthur CK Chung,2,3,4 Chun Pan Cheung,2,3,4 Eugene YK Tso,6 Kitty SC Fung,7 Veronica Chan,6 Lowell Ling,8 Gavin Joynt,8 David Shu- Cheong Hui,3,5 Kai Ming Chow ,3 Susanna So Shan Ng,3,5 Timothy Chun- Man Li,3,5 Rita WY Ng,1 Terry CF Yip,3,4 Grace Lai- Hung Wong ,3,4 Francis KL Chan ,2,3,4 Chun Kwok Wong,9 Paul KS Chan,1,2,10 Siew C Ng 2,3,4 ► Additional material is ABSTRACT Significance of this study published online only. To view Objective Although COVID-19 is primarily a please visit the journal online respiratory illness, there is mounting evidence (http:// dx. doi. org/ 10. 1136/ What is already known on this subject? gutjnl- 2020- 323020). suggesting that the GI tract is involved in this disease. We investigated whether the gut microbiome is linked ► SARS- CoV-2 primarily infects the respiratory For numbered affiliations see tract, however, pathophysiology of COVID-19 end of article. to disease severity in patients with COVID-19, and whether perturbations in microbiome composition, if can be attributed to aberrant immune responses in clearing the virus. -
Microbial Tryptophan Catabolites in Health and Disease
Downloaded from orbit.dtu.dk on: Sep 27, 2021 Microbial tryptophan catabolites in health and disease Roager, Henrik Munch; Licht, Tine Rask Published in: Nature Communications Link to article, DOI: 10.1038/s41467-018-05470-4 Publication date: 2018 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Roager, H. M., & Licht, T. R. (2018). Microbial tryptophan catabolites in health and disease. Nature Communications, 9(1). https://doi.org/10.1038/s41467-018-05470-4 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. REVIEW ARTICLE DOI: 10.1038/s41467-018-05470-4 OPEN Microbial tryptophan catabolites in health and disease Henrik M. Roager1,2 & Tine R. Licht 2 Accumulating evidence implicates metabolites produced by gut microbes as crucial media- tors of diet-induced host-microbial cross-talk. Here, we review emerging data suggesting that microbial tryptophan catabolites resulting from proteolysis are influencing host health. -
Involvement of Gut Microbiome in Human Health and Disease
Liang et al. Gut Pathog (2018) 10:3 https://doi.org/10.1186/s13099-018-0230-4 Gut Pathogens REVIEW Open Access Involvement of gut microbiome in human health and disease: brief overview, knowledge gaps and research opportunities Dachao Liang1†, Ross Ka‑Kit Leung2*†, Wenda Guan2 and William W. Au3,4 Abstract The commensal, symbiotic, and pathogenic microbial community which resides inside our body and on our skin (the human microbiome) can perturb host energy metabolism and immunity, and thus signifcantly infuence develop‑ ment of a variety of human diseases. Therefore, the feld has attracted unprecedented attention in the last decade. Although a large amount of data has been generated, there are still many unanswered questions and no universal agreements on how microbiome afects human health have been agreed upon. Consequently, this review was writ‑ ten to provide an updated overview of the rapidly expanding feld, with a focus on revealing knowledge gaps and research opportunities. Specifcally, the review covered animal physiology, optimal microbiome standard, health inter‑ vention by manipulating microbiome, knowledge base building by text mining, microbiota community structure and its implications in human diseases and health monitoring by analyzing microbiome in the blood. The review should enhance interest in conducting novel microbiota investigations that will further improve health and therapy. Keywords: Microbiome, High throughput sequencing, Metagenomics, Human disease causation What is microbiome? collection of bacteria or their genomes, unless otherwise Microorganisms often live in the form of a community. specifed. Furthermore, they can live in close association with com- Microbiome can be found throughout the human plex organisms, such as plants and humans, by establish- body, ranging from the skin to the gut, and to previously ing commensal, ammensal, mutualistic, parasitic and/or considered as sterile environments such as the blood pathogenic relationships with their hosts.