Acanthamoeba, Balamuthia and Naegleria); a Review
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Protistology Mitochondrial Genomes of Amoebozoa
Protistology 13 (4), 179–191 (2019) Protistology Mitochondrial genomes of Amoebozoa Natalya Bondarenko1, Alexey Smirnov1, Elena Nassonova1,2, Anna Glotova1,2 and Anna Maria Fiore-Donno3 1 Department of Invertebrate Zoology, Faculty of Biology, Saint Petersburg State University, 199034 Saint Petersburg, Russia 2 Laboratory of Cytology of Unicellular Organisms, Institute of Cytology RAS, 194064 Saint Petersburg, Russia 3 University of Cologne, Institute of Zoology, Terrestrial Ecology, 50674 Cologne, Germany | Submitted November 28, 2019 | Accepted December 10, 2019 | Summary In this mini-review, we summarize the current knowledge on mitochondrial genomes of Amoebozoa. Amoebozoa is a major, early-diverging lineage of eukaryotes, containing at least 2,400 species. At present, 32 mitochondrial genomes belonging to 18 amoebozoan species are publicly available. A dearth of information is particularly obvious for two major amoebozoan clades, Variosea and Tubulinea, with just one mitochondrial genome sequenced for each. The main focus of this review is to summarize features such as mitochondrial gene content, mitochondrial genome size variation, and presence or absence of RNA editing, showing if they are unique or shared among amoebozoan lineages. In addition, we underline the potential of mitochondrial genomes for multigene phylogenetic reconstruction in Amoebozoa, where the relationships among lineages are not fully resolved yet. With the increasing application of next-generation sequencing techniques and reliable protocols, we advocate mitochondrial -
The Intestinal Protozoa
The Intestinal Protozoa A. Introduction 1. The Phylum Protozoa is classified into four major subdivisions according to the methods of locomotion and reproduction. a. The amoebae (Superclass Sarcodina, Class Rhizopodea move by means of pseudopodia and reproduce exclusively by asexual binary division. b. The flagellates (Superclass Mastigophora, Class Zoomasitgophorea) typically move by long, whiplike flagella and reproduce by binary fission. c. The ciliates (Subphylum Ciliophora, Class Ciliata) are propelled by rows of cilia that beat with a synchronized wavelike motion. d. The sporozoans (Subphylum Sporozoa) lack specialized organelles of motility but have a unique type of life cycle, alternating between sexual and asexual reproductive cycles (alternation of generations). e. Number of species - there are about 45,000 protozoan species; around 8000 are parasitic, and around 25 species are important to humans. 2. Diagnosis - must learn to differentiate between the harmless and the medically important. This is most often based upon the morphology of respective organisms. 3. Transmission - mostly person-to-person, via fecal-oral route; fecally contaminated food or water important (organisms remain viable for around 30 days in cool moist environment with few bacteria; other means of transmission include sexual, insects, animals (zoonoses). B. Structures 1. trophozoite - the motile vegetative stage; multiplies via binary fission; colonizes host. 2. cyst - the inactive, non-motile, infective stage; survives the environment due to the presence of a cyst wall. 3. nuclear structure - important in the identification of organisms and species differentiation. 4. diagnostic features a. size - helpful in identifying organisms; must have calibrated objectives on the microscope in order to measure accurately. -
Acanthamoeba Spp., Balamuthia Mandrillaris, Naegleria Fowleri, And
MINIREVIEW Pathogenic and opportunistic free-living amoebae: Acanthamoeba spp., Balamuthia mandrillaris , Naegleria fowleri , and Sappinia diploidea Govinda S. Visvesvara1, Hercules Moura2 & Frederick L. Schuster3 1Division of Parasitic Diseases, National Center for Infectious Diseases, Atlanta, Georgia, USA; 2Division of Laboratory Sciences, National Center for Environmental Health, Centers for Disease Control and Prevention, Atlanta, Georgia, USA; and 3Viral and Rickettsial Diseases Laboratory, California Department of Health Services, Richmond, California, USA Correspondence: Govinda S. Visvesvara, Abstract Centers for Disease Control and Prevention, Chamblee Campus, F-36, 4770 Buford Among the many genera of free-living amoebae that exist in nature, members of Highway NE, Atlanta, Georgia 30341-3724, only four genera have an association with human disease: Acanthamoeba spp., USA. Tel.: 1770 488 4417; fax: 1770 488 Balamuthia mandrillaris, Naegleria fowleri and Sappinia diploidea. Acanthamoeba 4253; e-mail: [email protected] spp. and B. mandrillaris are opportunistic pathogens causing infections of the central nervous system, lungs, sinuses and skin, mostly in immunocompromised Received 8 November 2006; revised 5 February humans. Balamuthia is also associated with disease in immunocompetent chil- 2007; accepted 12 February 2007. dren, and Acanthamoeba spp. cause a sight-threatening infection, Acanthamoeba First published online 11 April 2007. keratitis, mostly in contact-lens wearers. Of more than 30 species of Naegleria, only one species, N. fowleri, causes an acute and fulminating meningoencephalitis in DOI:10.1111/j.1574-695X.2007.00232.x immunocompetent children and young adults. In addition to human infections, Editor: Willem van Leeuwen Acanthamoeba, Balamuthia and Naegleria can cause central nervous system infections in animals. Because only one human case of encephalitis caused by Keywords Sappinia diploidea is known, generalizations about the organism as an agent of primary amoebic meningoencephalitis; disease are premature. -
A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
Diagnosis of Infections Caused by Pathogenic Free-Living Amoebae
Virginia Commonwealth University VCU Scholars Compass Microbiology and Immunology Publications Dept. of Microbiology and Immunology 2009 Diagnosis of Infections Caused by Pathogenic Free- Living Amoebae Bruno da Rocha-Azevedo Virginia Commonwealth University Herbert B. Tanowitz Albert Einstein College of Medicine Francine Marciano-Cabral Virginia Commonwealth University Follow this and additional works at: http://scholarscompass.vcu.edu/micr_pubs Part of the Medicine and Health Sciences Commons Copyright © 2009 Bruno da Rocha-Azevedo et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Downloaded from http://scholarscompass.vcu.edu/micr_pubs/9 This Article is brought to you for free and open access by the Dept. of Microbiology and Immunology at VCU Scholars Compass. It has been accepted for inclusion in Microbiology and Immunology Publications by an authorized administrator of VCU Scholars Compass. For more information, please contact [email protected]. Hindawi Publishing Corporation Interdisciplinary Perspectives on Infectious Diseases Volume 2009, Article ID 251406, 14 pages doi:10.1155/2009/251406 Review Article Diagnosis of Infections Caused by Pathogenic Free-Living Amoebae Bruno da Rocha-Azevedo,1 Herbert B. Tanowitz,2 and Francine Marciano-Cabral1 1 Department of Microbiology and Immunology, Virginia Commonwealth University School of Medicine, Richmond, VA 23298, USA 2 Department of Pathology, Albert Einstein College of Medicine, Bronx, NY 10461, USA Correspondence should be addressed to Francine Marciano-Cabral, [email protected] Received 25 March 2009; Accepted 5 June 2009 Recommended by Louis M. Weiss Naegleria fowleri, Acanthamoeba spp., Balamuthia mandrillaris,andSappinia sp. -
Bacterial Brain Abscess in a Patient with Granulomatous Amebic Encephalitis
SVOA Neurology ISSN: 2753-9180 Case Report Bacterial Brain Abscess in a Patient with Granulomatous Amebic Encephalitis. A Misdiagnosis or Free-Living Amoeba Acting as Trojan Horse? Rolando Lovaton1* and Wesley Alaba1 1 Hospital Nacional Cayetano Heredia (Lima-Peru) *Corresponding Author: Dr. Rolando Lovaton, Neurosurgery Service-Hospital Nacional Cayetano Heredia, Avenida Honorio Delgado 262 San Martin de Porres, Lima-Peru Received: July 13, 2021 Published: July 24, 2021 Abstract Amebic encephalitis is a rare and devastating disease. Mortality rate is almost 90% of cases. Here is described a very rare case of bacterial brain abscess in a patient with recent diagnosis of granulomatous amebic encephalitis. Case De- scription: A 29-year-old woman presented with headache, right hemiparesis and tonic-clonic seizure. Patient was diag- nosed with granulomatous amebic encephalitis due to Acanthamoeba spp.; although, there was no improvement of symptoms in spite of stablished treatment. Three months after initial diagnosis, a brain MRI showed a ring-enhancing lesion in the left frontal lobe compatible with brain abscess. Patient was scheduled for surgical evacuation and brain abscess was confirmed intraoperatively. However, Gram staining of the purulent content showed gram-positive cocci. Patient improved headache and focal deficit after surgery. Conclusion: It is the first reported case of a patient with cen- tral nervous system infection secondary to Acanthamoeba spp. who presented a bacterial brain abscess in a short time. Keywords: amebic encephalitis; Acanthamoeba spp; bacterial brain abscess Introduction Free–living amoebae cause potentially fatal infection of central nervous system. Two clinical entities have been de- scribed for amebic encephalitis: primary amebic meningoencephalitis (PAM), and granulomatous amebic encephalitis (GAE). -
Acanthamoeba Castellanii
Int. J. Biol. Sci. 2018, Vol. 14 306 Ivyspring International Publisher International Journal of Biological Sciences 2018; 14(3): 306-320. doi: 10.7150/ijbs.23869 Research Paper Environmental adaptation of Acanthamoeba castellanii and Entamoeba histolytica at genome level as seen by comparative genomic analysis Victoria Shabardina1, Tabea Kischka1, Hanna Kmita2, Yutaka Suzuki3, Wojciech Maka owski1 1. Institute of Bioinformatics, University Münster, Niels-Stensen Strasse 14, Münster 48149, Germany ł 2. Laboratory of Bioenergetics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University 3. Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan Corresponding author: [email protected] © Ivyspring International Publisher. This is an open access article distributed under the terms of the Creative Commons Attribution (CC BY-NC) license (https://creativecommons.org/licenses/by-nc/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2017.11.15; Accepted: 2017.12.30; Published: 2018.02.12 Abstract Amoebozoans are in many aspects interesting research objects, as they combine features of single-cell organisms with complex signaling and defense systems, comparable to multicellular organisms. Acanthamoeba castellanii is a cosmopolitan species and developed diverged feeding abilities and strong anti-bacterial resistance; Entamoeba histolytica is a parasitic amoeba, who underwent massive gene loss and its genome is almost twice smaller than that of A. castellanii. Nevertheless, both species prosper, demonstrating fitness to their specific environments. Here we compare transcriptomes of A. castellanii and E. histolytica with application of orthologs’ search and gene ontology to learn how different life strategies influence genome evolution and restructuring of physiology. -
Evolution of Developmental Signalling in Dictyostelid Social Amoebas
Available online at www.sciencedirect.com ScienceDirect Evolution of developmental signalling in Dictyostelid social amoebas Pauline Schaap Dictyostelia represent a tractable system to resolve the The developmental programme has been most thoroughly evolution of cell-type specialization, with some taxa studied in Dictyostelium discoideum, a robust laboratory differentiating into spores only, and other taxa with additionally model that uses cAMP as a chemoattractant for aggrega- one or up to four somatic cell types. One of the latter forms, tion. The development of genetic transformation, gene Dictyostelium discoideum, is a popular model system for cell knock-out, targeted mutagenesis and high resolution im- biology and developmental biology with key signalling aging techniques in the ’80 and ’90s, make it the organism pathways controlling cell-specialization being resolved of choice for research into fundamental problems in cell recently. For the most dominant pathways, evolutionary origins biology and developmental biology [3]. More recently, it were retraced to a stress response in the unicellular ancestor, has also gained popularity for studies into social conflict while modifications in the ancestral pathway were associated [4], prey–predator interactions [5] and evolution of multi- with acquisition of multicellular complexity. This review cellular complexity [6]. In this review, I will first describe summarizes our current understanding of developmental the developmental signalling mechanisms that control the signalling in D. discoideum and its evolution. life cycle of D. discoideum and next summarize studies aimed to elucidate in which order specific aspects of Address complexity evolved, and how this was associated with School of Life Sciences, University of Dundee, DD15EH Dundee, UK innovations in intercellular communication. -
Pathogenic Free Living Amoeba
Middle Black Sea Journal of Health Science August 2015; 1(2): 13-20 REVIEW Risks and Threats Comes with Global Warming: Pathogenic Free Living Amoeba Nihal Doğan1 1Osmangazi University Medical Faculty Microbiology Department. Eskişehir, Turkey Received: 28 July 2015 accepted: 12 August 2015/ published online: 30 August 2015 © Ordu University Institute of Health Science, Turkey, 2015 Abstract Free living amoebae like Naegleria, Acanthamoeba, Balamuthia and Sappinia are known appearing opportunistic and also fatal protozoa in humans and other animals. They are widely distributed in soil and water in the world. They cause “Primer Amoebic Meningoencephalitis” the host immune response to these protist pathogens differs from each other to evidence by the postmortem laboratory findings from the affected patients. This review was performed with a search in Medline, PubMed, Science Direct, Ovid, and Scopus literatures by the search terms of “pathogenic free-living amoeba infections”. Analysis of a detailed review and literature shown that Naegleria fowleri, Acanthamoeba and Balamuthia and also Sappinia sp. infections are causing extensive brain damage to the host immune response. In human infection due to related to brain, skin, lung and eyes have increased significantly during the last years. They have different effects on epidemiology, immunology, pathology, and clinical features of the infections produced. This particular review planned to raise awareness about free-living amoeba, which found in a patient who applied to ESOGU Hospital Neurology Clinic because of suddenly unconsciousness and coma and diagnosed with Naegleria fowleri. Clinicians should be aware of PAM infections and include in differential diagnosis of meningoencephalitis. PAM should be suspected in young adults and children with acute neurological symptoms as described below and recent exposure to fresh water. -
Eukaryotic Microbiology Protistologists
The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 57(2), 2010 pp. 189–196 r 2010 The Author(s) Journal compilation r 2010 by the International Society of Protistologists DOI: 10.1111/j.1550-7408.2009.00466.x Invalidation of Hyperamoeba by Transferring its Species to Other Genera of Myxogastria ANNA MARIA FIORE-DONNO,a AKIKO KAMONO,b EMA E. CHAO,a MANABU FUKUIb and THOMAS CAVALIER-SMITHa aZoology Department, University of Oxford, South Parks Road, OX1 3PS Oxford, United Kingdom, and bThe Institute of Low Temperature Science, Hokkaido University, Kita 19, Nishi 8, Kita-ku, Sapporo, Hokkaido 010-0819, Japan ABSTRACT. The genus Hyperamoeba Alexeieff, 1923 was established to accommodate an aerobic amoeba exhibiting three life stages— amoeba, flagellate, and cyst. As more species/strains were isolated, it became increasingly evident from small subunit (SSU) gene phylo- genies and ultrastructure that Hyperamoeba is polyphyletic and its species occupy different positions within the class Myxogastria. To pinpoint Hyperamoeba strains within other myxogastrid genera we aligned numerous myxogastrid sequences: whole small subunit ribo- somal (SSU or 18S rRNA) gene for 50 dark-spored (i.e. Stemonitida and Physarida) Myxogastria (including a new ‘‘Hyperamoeba’’/ Didymium sequence) and a 400-bp SSU fragment for 147 isolates assigned to 10 genera of the order Physarida. Phylogenetic analyses show unambiguously that the type species Hyperamoeba flagellata is a Physarum (Physarum flagellatum comb. nov.) as it nests among other Physarum species as robust sister to Physarum didermoides. Our trees also allow the following allocations: five Hyperamoeba strains to the genus Stemonitis; Hyperamoeba dachnaya, Pseudodidymium cryptomastigophorum, and three other Hyperamoeba strains to the genus Didymium; and two further Hyperamoeba strains to the family Physaridae. -
Classification and Nomenclature of Human Parasites Lynne S
C H A P T E R 2 0 8 Classification and Nomenclature of Human Parasites Lynne S. Garcia Although common names frequently are used to describe morphologic forms according to age, host, or nutrition, parasitic organisms, these names may represent different which often results in several names being given to the parasites in different parts of the world. To eliminate same organism. An additional problem involves alterna- these problems, a binomial system of nomenclature in tion of parasitic and free-living phases in the life cycle. which the scientific name consists of the genus and These organisms may be very different and difficult to species is used.1-3,8,12,14,17 These names generally are of recognize as belonging to the same species. Despite these Greek or Latin origin. In certain publications, the scien- difficulties, newer, more sophisticated molecular methods tific name often is followed by the name of the individual of grouping organisms often have confirmed taxonomic who originally named the parasite. The date of naming conclusions reached hundreds of years earlier by experi- also may be provided. If the name of the individual is in enced taxonomists. parentheses, it means that the person used a generic name As investigations continue in parasitic genetics, immu- no longer considered to be correct. nology, and biochemistry, the species designation will be On the basis of life histories and morphologic charac- defined more clearly. Originally, these species designa- teristics, systems of classification have been developed to tions were determined primarily by morphologic dif- indicate the relationship among the various parasite ferences, resulting in a phenotypic approach. -
Acta Protozool
Acta Protozool. (2015) 54: 45–51 www.ejournals.eu/Acta-Protozoologica ACTA doi:10.4467/16890027AP.15.004.2191 PROTOZOOLOGICA Electron Microscopical Investigations of a New Species of the Genus Sappinia (Thecamoebidae, Amoebozoa), Sappinia platani sp. nov., Reveal a Dictyosome in this Genus Claudia WYLEZICH1, Julia WALOCHNIK2, Daniele CORSARO3, Rolf MICHEL4, Alexander KUDRYAVTSEV5 1Department of General Ecology, Zoological Institute, University of Cologne, Germany; present address: Leibniz-Institute for Baltic Sea Research Warnemünde, Rostock, Germany; 2Molecular Parasitology, Institute of Specific Prophylaxis and Tropical Medicine, Medical University of Vienna, Austria; 3CHLAREAS – Chlamydia Research Association, Vandoeuvre-lès-Nancy, France; 4Central Institute of the Federal Armed Forces Medical Services, Department of Microbiology (Parasitology) Koblenz, Germany; 5Department of Invertebrate Zoology, Faculty of Biology, St. Petersburg State University, Russia Abstract. The genus Sappinia belongs to the family Thecamoebidae within the Discosea (Amoebozoa). For long time the genus comprised only two species, S. pedata and S. diploidea, based on morphological investigations. However, recent molecular studies on gene sequences of the small subunit ribosomal RNA (SSU rRNA) gene revealed a high genetic diversity within the genus Sappinia. This indicated a larger species richness than previously assumed and the establishment of new species was predicted. Here, Sappinia platani sp. nov. (strain PL- 247) is described and ultrastructurally investigated. This strain was isolated from the bark of a sycamore tree (Koblenz, Germany) like the re-described neotype of S. diploidea. The new species shows the typical characteristics of the genus such as flattened and binucleate tro- phozoites with a differentiation of anterior hyaloplasm and without discrete pseudopodia as well as bicellular cysts.