The Open Knowledge Foundation: Open Data Means Better Science
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When Is Open Access Not Open Access?
Editorial When Is Open Access Not Open Access? Catriona J. MacCallum ince 2003, when PLoS Biology Box 1. The Bethesda Statement on Open-Access Publishing was launched, there has been This is taken from http:⁄⁄www.earlham.edu/~peters/fos/bethesda.htm. a spectacular growth in “open- S 1 access” journals. The Directory of An Open Access Publication is one that meets the following two conditions: Open Access Journals (http:⁄⁄www. 1. The author(s) and copyright holder(s) grant(s) to all users a free, irrevocable, doaj.org/), hosted by Lund University worldwide, perpetual right of access to, and a license to copy, use, distribute, transmit Libraries, lists 2,816 open-access and display the work publicly and to make and distribute derivative works, in any digital journals as this article goes to press medium for any responsible purpose, subject to proper attribution of authorship2, as (and probably more by the time you well as the right to make small numbers of printed copies for their personal use. read this). Authors also have various 2. A complete version of the work and all supplemental materials, including a copy of “open-access” options within existing the permission as stated above, in a suitable standard electronic format is deposited subscription journals offered by immediately upon initial publication in at least one online repository that is supported traditional publishers (e.g., Blackwell, by an academic institution, scholarly society, government agency, or other well- Springer, Oxford University Press, and established organization that seeks to enable open access, unrestricted distribution, many others). In return for a fee to interoperability, and long-term archiving (for the biomedical sciences, PubMed Central the publisher, an author’s individual is such a repository). -
Of Us Research Program Ethical, Legal, and Social Implications (ELSI)
All of Us Research Program Ethical, Legal, and Social Implications (ELSI) Research Priorities Workshop June 24–25, 2019 Executive Summary The All of Us Research Program’s Ethical, Legal, and Social Implications (ELSI) Research Priorities Workshop was held on June 24–25, 2019. The workshop convened ELSI professionals and All of Us participant ambassadors to help identify ELSI research opportunities using the All of Us Research Program, provide feedback on how to advance ELSI research by using the program and its data resources, and suggest ELSI-related research use cases.1 On Day 1, attendees received information on the program’s research platform, scientific framework and priorities, commitment to diversity, participant engagement strategy, data access and privacy policies, and new activities that are being planned. They also received a demonstration of the All of Us public data browser. Attendees then divided into working groups organized around three themes: (1) genomics; (2) social determinants of health; and (3) legal, regulatory, and policy issues. In these groups, attendees participated in a facilitated activity where they discussed and recorded ELSI research questions of interest and the data needed to answer them, including data with planned availability through the program’s Research Hub. During an open discussion on Day 2, attendees raised significant concerns about the structure of Day 1 and asserted that the program could make better use of their deep and varied expertise by reframing the workshop to allow for exploration of some important ELSI considerations that the program raises, including protecting participants’ rights and privacy and ensuring that participants have a real voice in the program. -
A Fool's Errand
COMMENT by the madness of mobs. Will a crowd- sourced scholarship be dominated by pro- vocative pap that fills without nourishing? Here we must recall first that schol- arship has always been a community MONROE BRENDAN enterprise, driven by building consen- sus among experts10. So the question is not ‘Should we crowdsource?’ but ‘How should we crowdsource?’. Second, we must dispose of the straw-man argument that hundreds of uninformed readers’ opinions will count for more than one Fields medallist’s recommendation. Authority and expertise are central in the Web era as they were in the journal era. The difference is that whereas the paper- based system used subjective criteria to identify authoritative voices, the Web- based one assesses authority recursively from the entire community. We now have a unique opportunity as scholars to guide the evolution of our tools in directions that honour our val- ues and benefit our communities. Here’s what to do. First, try new things: publish new kinds of products, share them in new places and brag about them using new metrics. Intellectual playfulness is a core scholarly virtue. Second, take risks (another scholarly virtue): publishing more papers may be safe, but scholars who establish early leadership in Web- native production will be ahead of the curve as these genres become dominant. A fool’s errand Finally, resist the urge to cling to the trap- pings of scientific excellence rather than Objections to the Creative Commons attribution excellence itself. ‘Publication’ is just one mode of making public and one way of licence are straw men raised by parties who want open validating scholarly excellence. -
The Fourth Paradigm
ABOUT THE FOURTH PARADIGM This book presents the first broad look at the rapidly emerging field of data- THE FOUR intensive science, with the goal of influencing the worldwide scientific and com- puting research communities and inspiring the next generation of scientists. Increasingly, scientific breakthroughs will be powered by advanced computing capabilities that help researchers manipulate and explore massive datasets. The speed at which any given scientific discipline advances will depend on how well its researchers collaborate with one another, and with technologists, in areas of eScience such as databases, workflow management, visualization, and cloud- computing technologies. This collection of essays expands on the vision of pio- T neering computer scientist Jim Gray for a new, fourth paradigm of discovery based H PARADIGM on data-intensive science and offers insights into how it can be fully realized. “The impact of Jim Gray’s thinking is continuing to get people to think in a new way about how data and software are redefining what it means to do science.” —Bill GaTES “I often tell people working in eScience that they aren’t in this field because they are visionaries or super-intelligent—it’s because they care about science The and they are alive now. It is about technology changing the world, and science taking advantage of it, to do more and do better.” —RhyS FRANCIS, AUSTRALIAN eRESEARCH INFRASTRUCTURE COUNCIL F OURTH “One of the greatest challenges for 21st-century science is how we respond to this new era of data-intensive -
The Machine That Would Predict the Future
TECHNOLOGY SPECIAL REPORT The Machine That Would Predic t the If you dropped all the world’s data into a black box, could it become a crystal ball that Futurewould let you see the future—even test what would happen if you chose A over B? One researcher thinks so, and he could soon get a billion euros to build it By David Weinberger In the summer and fall of last year, the Greek financial crisis tore at the seams of the global economy. Having run up a debt that it would never be able to repay, the country faced a number of poten- tial outcomes, all unpleasant. Efforts to slash spending spurred riots in the streets of Athens, while threats of default rattled global financial markets. Many economists argued that Greece should leave the euro zone and devalue its currency, a move that would in theory help the economy grow. “Make no mistake: an orderly euro exit will be hard,” wrote New York Universi- ty economist Nouriel Roubini in the Financial Times. “But watching the slow disorderly implo- sion of the Greek economy and society will be much worse.” No one was sure exactly how the scenario would play out, limit the spread of infectious disease. Altered trade routes could though. Fear spread that if Greece were to abandon the euro, disrupt native ecosystems. The question itself is simple— Spain and Italy might do the same, weakening the central bond Should Greece drop the euro?—but the potential fallout is so of the European Union. Yet the Economist opined that the crisis far-reaching and complex that even the world’s sharpest minds would “bring more fiscal-policy control from Brussels, turning found themselves unable to grasp all the permutations. -
The Legal Framework for Reproducible Scientific Research Licensing and Copyright
R EPRODUCIBLE RESEARCH The Legal Framework for Reproducible Scientific Research Licensing and Copyright As computational researchers increasingly make their results available in a reproducible way, questions naturally arise regarding copyright, subsequent use and citation, and ownership rights in general. The author proposes the Reproducible Research Standard for all components of scientific researchers’ scholarship, which should encourage replicable scientific investigation through attribution, the facilitation of greater collaboration, and the promotion of the engagement of the larger community in scientific learning and discovery. n the US, when scientists put their original computational work because researchers often research on the Web, it automatically falls need more than just the published article to re- under copyright. However, copyright is produce the results. an unsuitable legal structure for scientific Although this trend seems to be changing, the Iworks. Scientific norms guide scientists to repro- typical journal publishing format doesn’t allow for duce and build on others’ research, and default transmission of supporting files such as accom- copyright law by its very purpose runs counter panying images, source code, or demonstrations to these goals. In this article, I present a meth- of work to interested readers—although some odology for scientists to rescind copyright from journals are beginning to require that code or their work in such a way that it realigns scientific data be released as a precondition for publication, information sharing with long-established scien- (for example, Nature [www.nature.com/authors/ tific norms. editorial_policies/availability.html], The Insight Journal [www.insight-journal.org], and Annals of Options for Researchers Internal Medicine [www.annals.org/cgi/content/ Computational research is becoming more per- full/0000605-200703200-00154v1]). -
Open Access, Open Education and Open Data
IFMSA Policy Proposal OpenAccess, OpenEducation and OpenData Proposed by Team of Officials Presented to the IFMSA General Assembly August Meeting 2017 in Arusha, Tanzania Policy Commission • Eleanor Parkhill, Medsin-UK, [email protected] • Kim van Daalen, IFMSA-The-Netherlands, ifmsa-the- [email protected] • Alexander Lachapelle, Liaison Officer for Medical Education issues, IFMSA, [email protected] Policy Statement Introduction Scholarly material is essential for research and education. Committing to making high value scientific knowledge accessible to researchers, scientists, entrepreneurs, and policy makers worldwide is a major step towards better health outcomes for all. Yet, cost barriers or use restrictions often prevent health professionals worldwide - and scientists from all areas - from engaging or consulting the very materials that report scientific discovery. Over the past decade, Open Access, Open Education & Open data have become central to advancing the interests of researchers, scholars, students, businesses and the public. Yet, while consulting academic journals, students face limited access to published research output, data and papers because of very high fees. The high cost of academic journals restricts the use of knowledge. A vast amount of research is funded from public sources – yet taxpayers are locked out by the cost of access. IFMSA Position The International Federation of Medical Students’ Associations (IFMSA) firmly believes in the importance of openness across all published research outputs (including among others, all online research output, peer-review and non-peer-reviewed academic journal articles, conference papers, theses, book chapters, monographs). Thereby IFMSA believes in the ability of openness to improve the educational experience, democratize access to research and education, advance research and education, and improve the visibility and impact of scholarship. -
Another Reason for Opening Access to Research
Downloaded from bmj.com on 16 February 2007 Another reason for opening access to research John Wilbanks BMJ 2006;333;1306-1308 doi:10.1136/sbmj.39063.730660.F7 Updated information and services can be found at: http://bmj.com/cgi/content/full/333/7582/1306 These include: Rapid responses 3 rapid responses have been posted to this article, which you can access for free at: http://bmj.com/cgi/content/full/333/7582/1306#responses You can respond to this article at: http://bmj.com/cgi/eletter-submit/333/7582/1306 Email alerting Receive free email alerts when new articles cite this article - sign up in the service box at the top left of the article Notes To order reprints follow the "Request Permissions" link in the navigation box To subscribe to BMJ go to: http://resources.bmj.com/bmj/subscribers Downloaded from bmj.com on 16 February 2007 Inspiration Another reason for opening access to research John Wilbanks Science Commons Much of the debate about open access has focused on Project, Creative Commons, c/o the principle of access for scientists and the economics Massachusetts of such a change. There is a second principle to Institute of consider: the full power of new technological Technology Computer Science approaches such as text mining, collaborative filtering, and Artificial and semantic indexing, are not resulting in powerful Intelligence new public resources. Despite real success in the open Laboratory, Cambridge, MA access movement, most scholarly research is unavailable, 02127, USA either for study or for processing by software. wilbanks@ creativecommons.org According to the Budapest open access initiative, John Wilbanks “There are many degrees and kinds of wider and easier executive director access to this literature. -
PLOS Biology Open Research: Protocols in PLOS ONE
COVID-19, Open Research, Trust and Transparency Niamh O’Connor │ March 2021 …is a nonprofit, Open Access publisher empowering researchers to accelerate progress in science and medicine by leading a transformation in research communication. We propelled the movement for OA alternatives to subscription journals. We established the first multi-disciplinary publication inclusive of all research regardless of novelty or impact. And we demonstrated the importance of open data availability. All articles across our journals are published under CC BY licence. From Open Access to Open Science How do we co-create a system that’s open for everyone? From Open Access to Open Research “Openness enables researchers to address entirely new questions and work across national and disciplinary boundaries.” NASEM Report, Open Science by Design, 2018 The chain, whereby new scientific discoveries are built on previously established results, can only work optimally if all research results are made openly available to the scientific community.’ Schiltz M (2018), PLoS Biol 16(9): e3000031. https://doi.org/10.1371/journal.pbio.3000031 Open research increases trust https://www.pewresearch.org/f act-tank/2019/10/04/most- americans-are-wary-of- industry-funded-research/ Copyright 2019 Pew Research Center Trends: impact of the early months of the pandemic April 2020 theplosblog.plos.org/2020/04/learning-how-we-can-support-researchers-during-covid-19/ Open Research: Pre-prints Note: 2018 figures are from May; 2021 is to mid-February; Percentages are of those articles -
Tweets from the Trans-NIH Workshop to Explore the Ethical, Legal And
Trans-NIH Workshop to Explore the Ethical, Legal and Social Implications (ELSI) of Citizen Science #CitSciELSI Tweets January 13-14, 2015 Date Screen Name User Name Tweet Text 1/16/2015 4:13:30 @NCIPhySci NCI PhysicalSciences The #CitSciELSI workshop has been storified! http://t.co/6CHPksBUkU via @storify RT @CCPHconference: Hope you'll continue the #CitSciELSI conversation in #Canada this spring! @cuexpo 1/16/2015 2:57:48 @CUEUVic CUE UVic http://t.co/TRgq3ioHYg #CBPR #engaged… MT @CitSciAssoc: Concerned about #publichealth? Check out these #citizenscience sessions at #CitSci2015 1/15/2015 23:07:56 @CCPH2010 CCPH http://t.co/Z9wxqjcHoB #CitSciELSI Concerned about #publichealth? Sessions about role of #citizenscience in #communityhealth at #CitSci2015 1/15/2015 22:30:14 @CitSciAssoc CitSciAssoc http://t.co/pasVrGCIFX #CitSciELSI RT @engagedethics: Let's keep sharing #CitSciELSI resources, like this blogspot (thanks @CoopSciScoop for 1/15/2015 20:39:44 @JackieJCreedon Jackie James-Creedon workshop tweets). http://t.co/avD… RT @engagedethics: Let's keep sharing #CitSciELSI resources, like this blogspot (thanks @CoopSciScoop for 1/15/2015 19:08:51 @CoopSciScoop Caren Cooper workshop tweets). http://t.co/avD… RT @HealthcareWen: Jan13-4 webcast: Ethical-Legal-Social Implications of CITIZEN SCIENCE 1/15/2015 18:52:49 @AlisynGayle Alisyn Gayle http://t.co/nils5MhgJ5 #CitSciELSI @genome_gov @ST… RT @CCPH2010: Ah ha! There IS a Journal of Negative Results! http://t.co/kjBXTUCfHx @AndreaWiggins 1/15/2015 12:23:30 @KTAustralia Tamika Heiden #CitSciELSI #research RT @CitSciAssoc: Re-imagining #CitizenScience: Knowledge for #equality? New #citsci2015 blog post! 1/15/2015 9:42:13 @nmdammann Nancy M. -
Plos Progress Update 2014/2015 from the Chairman and Ceo
PLOS PROGRESS UPDATE 2014/2015 FROM THE CHAIRMAN AND CEO PLOS is dedicated to the transformation of research communication through collaboration, transparency, speed and access. Since its founding, PLOS has demonstrated the viability of high quality, Open Access publishing; launched the ground- breaking PLOS ONE, a home for all sound science selected for its rigor, not its “significance”; developed the first Article- Level Metrics (ALMs) to demonstrate the value of research beyond the perceived status of a journal title; and extended the impact of research after its publication with the PLOS data policy, ALMs and liberal Open Access licensing. But challenges remain. Scientific communication is far from its ideal state. There is still inconsistent access, and research is oered at a snapshot in time, instead of as an evolving contribution whose reliability and significance are continually evaluated through its lifetime. The current state demands that PLOS continue to establish new standards and expectations for scholarly communication. These include a faster and more ecient publication experience, more transparent peer review, assessment though the lifetime of a work, better recognition of the range of contributions made by collaborators and placing researchers and their communities back at the center of scientific communication. To these ends, PLOS is developing ApertaTM, a system that will facilitate and advance the submission and peer review process for authors, editors and reviewers. PLOS is also creating richer and more inclusive forums, such as PLOS Paleontology and PLOS Ecology Communities and the PLOS Science Wednesday redditscience Ask Me Anything. Progress is being made on early posting of manuscripts at PLOS. -
Models for Sustainable Open Educational Resources
Models for Sustainable Open Educational Resources Stephen Downes National Research Council Canada 29 January 2006 The Open Courseware concept is based on the philosophical view of knowledge as a collective social product and so it is also desirable to make it a social property. - V. S. Prasad, Vice-Chancellor - Dr. B. R. Ambedkar Open University, India Imagine a world in which every single person is given free access to the sum of all human knowledge. That's what we're doing. - Terry Foote, Wikipedia The Importance of Open Educational Resources The importance of open educational resources (OERs) has been widely documented and demonstrated recently. From conferences and declarations dedicated to the support of OERs to the development of resource repositories and other services, there has been a general awakening in the learning community. Countering that trend are some of the challenges surrounding the fostering of a network of OERs. If, as Larsen and Vincent-Lancrin (2005) say, "The open sharing of one's educational resources implies that knowledge is made freely available on non- commercial terms," then this raises the question of how such a network is to be sustained. If resource users do not pay for their production and distribution, for example, then how can their production and distribution be maintained? This short essay is about the sustainability of OERs. Most people, when they think of sustainability, think of how resources are paid for, but this essay takes a wider view, for it should be clear that this is only one part of a larger picture. So we will what they are, who creates them, how we pay for this, how we distribute them and how we work with them.