Singlet Oxygen: Photosensitized Generation, Detection and Reaction with Organic Molecules
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Transparent Photochemistry: Infrared Photosensitizers and Singlet Oxygen Microscopy
Transparent Photochemistry: Infrared photosensitizers and singlet oxygen microscopy Elsa Fernanda Freitas da Silva Tese orientada por: Luís Guilherme da Silva Arnaut Moreira e Peter Remsen Ogilby Universidade de Coimbra Tese de Doutoramento em Química, especialidade Fotoquímica apresentada ao Departamento de Química da Faculdade de Ciências e tecnologia da Universidade de Coimbra. Coimbra, Julho de 2013 Acknowledgements This dissertation is the result of joint efforts, collaborations and help by many people. I want to express my appreciation to my supervisor, Professor Luis G. Arnaut, for his guidance, support and availability. His enthusiasm with science and motivation are an example to me. It has been a great pleasure to work in his group. To my group of colleagues in Coimbra: Rui Nunes, Gonçalo Sá, Ligia Silva, Hélder Tão, I want to thank you all for the support and fellowship. Specially, I want to thank Carlos Serpa for his availability to help and assistance me with the laser systems and, Fábio Schaberle for his assistance with photoacoustic calorimetry experiments and for been actively interested on my work providing me with great comments that were valued greatly. My special thanks to Professor Peter R. Ogilby for accepting to be my co-supervisor and give me the opportunity to work with different techniques in his laboratory in the University of Aarhus in Denmark. Peter valuable suggestions have greatly improved my scientific work. I have had a great time working in COMIs group. I want to thank all COMI group members whom I have encountered during my stay, for their great support and welcoming. Brian Wett for walking me through the laboratory on my first times. -
States of Oxygen Liquid and Singlet Oxygen Photodynamic Therapy
Oxygen States of Oxygen As far as allotropes go, oxygen as an element is fairly uninteresting, with ozone (O3, closed-shell and C2v symmetric like SO2) and O2 being the stable molecular forms. Most of our attention today will be devoted to the O2 molecule that is so critically connected with life on Earth. 2 2 2 4 2 O2 has the following valence electron configuration: (1σg) (1σu) (2σg) (1πu) (1πg) . It is be- cause of the presence of only two electrons in the two π* orbitals labelled 1πg that oxygen is paramagnetic with a triplet (the spin multiplicity \triplet" is given by 2S+1; here S, the total spin quantum number, is 0.5 + 0.5 = 1). There are six possible ways to arrange the two electrons in the two degenerate π* orbitals. These different ways of arranging the electrons in the open shell are called \microstates". Further, because there are six microstates, we can say that the total degeneracy of the electronic states 2 3 − arising from (1πg) configuration must be equal to six. The ground state of O2 is labeled Σg , the left superscript 3 indicating that this is a triplet state. It is singly degenerate orbitally and triply degenerate in terms of spin multiplicity; the total degeneracy (three for the ground state) is given by the spin times the orbital degeneracy. 1 The first excited state of O2 is labeled ∆g, and this has a spin degeneracy of one and an orbital degeneracy of two for a total degeneracy of two. This state corresponds to spin pairing of the electrons in the same π* orbital. -
The Photochemistry of Tetramethyl-3-Thio-1,3-Cyclobutanedione
South Dakota State University Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange Electronic Theses and Dissertations 1972 The Photochemistry of tetramethyl-3-thio-1,3-cyclobutanedione Mason Ming-Sun Shen Follow this and additional works at: https://openprairie.sdstate.edu/etd Recommended Citation Shen, Mason Ming-Sun, "The Photochemistry of tetramethyl-3-thio-1,3-cyclobutanedione" (1972). Electronic Theses and Dissertations. 4833. https://openprairie.sdstate.edu/etd/4833 This Thesis - Open Access is brought to you for free and open access by Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. For more information, please contact [email protected]. THE PHarOCHEMISTRY OF TETRAMETHYL-3-THIO-l,J-CYCLOBUTANEDIONE BY MASON MING-SUN SHEN A thesis submitted in partial fulfillment of the requirements for tne degree Master of Science, Major - in Chemistry, South Dakota State University 1972 SOUTH DAKOTA STATE UNIVERSITY LIBRAR fer -th:Ls -7 - - -- -07 - D;;;/:...; TO MY PARENTS PHOTOCHEMISTRY OF THE TETRAMETHYL-)-THI0-1,)-CYCLOBUTANEDIONE Abstract MASON MING-SUN SHEN Under the supervision of Professor James J. Worman photochemical reaction of tetramethyl-3-thio-i.l,3-cyclo The butanedione in the presence of oxygen and light yields tetramethyl-1, )-cyclobutanedione and sulfur dioxide. kinetics and mechanism of the reaction have been studied The thoroughly in different solvents and at different concentrations. Results this study indicate that the mechanism probably involves· of singlet oxygen and state thione although triplet thione and ground triplet xygen are not completely eliminated. -
Oxygen - Wikipedia
5/20/2020 Oxygen - Wikipedia Oxygen Oxygen is the chemical element with the symbol O and atomic number 8. It is a member of the chalcogen group in Oxygen, 8O the periodic table, a highly reactive nonmetal, and an oxidizing agent that readily forms oxides with most elements as well as with other compounds. After hydrogen and helium, oxygen is the third-most abundant element in the universe by mass. At standard temperature and pressure, two atoms of the element bind to form dioxygen, a colorless and odorless diatomic gas with the formula O2. Diatomic oxygen gas constitutes 20.95% of the Earth's atmosphere. As compounds including oxides, the element makes up almost half of the Earth's crust.[2] Liquid oxygen boiling Dioxygen provides the energy released in combustion[3] and Oxygen aerobic cellular respiration,[4] and many major classes of Allotropes O2, O3 (ozone) organic molecules in living organisms contain oxygen atoms, such as proteins, nucleic acids, carbohydrates, and fats, as do Appearance gas: colorless the major constituent inorganic compounds of animal shells, liquid and solid: pale teeth, and bone. Most of the mass of living organisms is blue oxygen as a component of water, the major constituent of Standard atomic [15.999 03, 15.999 77] lifeforms. Oxygen is continuously replenished in Earth's weight A (O) conventional: 15.999 atmosphere by photosynthesis, which uses the energy of r, std sunlight to produce oxygen from water and carbon dioxide. Oxygen in the periodic table Oxygen is too chemically reactive to remain a free element in H H – air without being continuously replenished by the LB BCNOFN ↑ SM ASPSCA photosynthetic action of living organisms. -
Inorganic Chemistry/Chemical Bonding/MO Diagram 1
Inorganic Chemistry/Chemical Bonding/MO Diagram 1 Inorganic Chemistry/Chemical Bonding/MO Diagram A molecular orbital diagram or MO diagram for short is a qualitative descriptive tool explaining chemical bonding in molecules in terms of molecular orbital theory in general and the Linear combination of atomic orbitals molecular orbital method (LCAO method) in particular [1] [2] [3] . This tool is very well suited for simple diatomic molecules such as dihydrogen, dioxygen and carbon monoxide but becomes more complex when discussing polynuclear molecules such as methane. It explains why some molecules exist and not others, how strong bonds are, and what electronic transitions take place. Dihydrogen MO diagram The smallest molecule, hydrogen gas exists as dihydrogen (H-H) with a single covalent bond between two hydrogen atoms. As each hydrogen atom has a single 1s atomic orbital for its electron, the bond forms by overlap of these two atomic orbitals. In figure 1 the two atomic orbitals are depicted on the left and on the right. The vertical axis always represents the orbital energies. The atomic orbital energy correlates with electronegativity as a more electronegative atom holds an electron more tightly thus lowering its energy. MO treatment is only valid when the atomic orbitals have comparable energy; when they differ greatly the mode of bonding becomes ionic. Each orbital is singly occupied with the up and down arrows representing an electron. The two AO's can overlap in two ways depending on their phase relationship. The phase of an orbital is a direct consequence of the oscillating, wave-like properties of electrons. -
Supramolecular Control of Singlet Oxygen Generation
molecules Review Supramolecular Control of Singlet Oxygen Generation Akshay Kashyap 1, Elamparuthi Ramasamy 2, Vijayakumar Ramalingam 3 and Mahesh Pattabiraman 1,* 1 Department of Chemistry, University of Nebraska Kearney, Kearney, NE 68849, USA; [email protected] 2 Department of Chemistry and Biochemistry, The University of Texas at Arlington, Arlington, TX 76019, USA; [email protected] 3 Department of Biology and Chemistry, SUNY Polytechnic Institute, Utica, NY 13502, USA; [email protected] * Correspondence: [email protected] 1 Abstract: Singlet oxygen ( O2) is the excited state electronic isomer and a reactive form of molecu- lar oxygen, which is most efficiently produced through the photosensitized excitation of ambient triplet oxygen. Photochemical singlet oxygen generation (SOG) has received tremendous attention historically, both for its practical application as well as for the fundamental aspects of its reactivity. Applications of singlet oxygen in medicine, wastewater treatment, microbial disinfection, and syn- thetic chemistry are the direct results of active past research into this reaction. Such advancements were achieved through design factors focused predominantly on the photosensitizer (PS), whose photoactivity is relegated to self-regulated structure and energetics in ground and excited states. However, the relatively new supramolecular approach of dictating molecular structure through non-bonding interactions has allowed photochemists to render otherwise inactive or less effective 1 PSs as efficient O2 generators. This concise and first of its kind review aims to compile progress in SOG research achieved through supramolecular photochemistry in an effort to serve as a refer- ence for future research in this direction. The aim of this review is to highlight the value in the Citation: Kashyap, A.; Ramasamy, E.; supramolecular photochemistry approach to tapping the unexploited technological potential within Ramalingam, V.; Pattabiraman, M. -
Mechanochemical Generation of Singlet Oxygen†
RSC Advances View Article Online PAPER View Journal | View Issue Mechanochemical generation of singlet oxygen† a a a a Cite this: RSC Adv., 2020, 10,9182 Abdurrahman Turksoy,‡ Deniz Yildiz, ‡ Simay Aydonat, ‡ Tutku Beduk, Merve Canyurt,a Bilge Baytekin*a and Engin U. Akkaya *b Controlled generation of singlet oxygen is very important due to its involvement in scheduled cellular maintenance processes and therapeutic potential. As a consequence, precise manipulation of singlet oxygen release rates under mild conditions, is crucial. In this work, a cross-linked polyacrylate, and a polydimethylsiloxane elastomer incorporating anthracene-endoperoxide modules with chain extensions at the 9,10-positions were synthesized. We now report that on mechanical agitation in Received 28th January 2020 cryogenic ball mill, fluorescence emission due to anthracene units in the PMA (polymethacrylate) Accepted 21st February 2020 polymer is enhanced, with a concomitant generation of singlet oxygen as proved by detection with DOI: 10.1039/d0ra00831a a selective probe. The PDMS (polydimethylsiloxane) elastomer with the anthracene endoperoxide rsc.li/rsc-advances mechanophore, is also similarly sensitive to mechanical force. Creative Commons Attribution-NonCommercial 3.0 Unported Licence. Introduction The stability of the endoperoxides differ widely, and in a large number of 2-pyridone, naphthalene and anthracene Singlet oxygen refers to the lowest energy excited state of the endoperoxides, high yield release of singlet oxygen without side 8 molecular oxygen. Since the direct excitation of the ground state reactions was documented. As a matter of fact, the diversity in oxygen is forbidden by spin, symmetry and parity rules, it is the rates of cycloreversion reactions may eventually prove to be most commonly generated by photosensitization, making use very useful for ne tuning a biologically relevant singlet oxygen of the intermediacy of photosensitizer organic compounds with release. -
Cubic C8: an Observable Allotrope of Carbon?
1 This is the peer reviewed version of the following article: Sharapa, D., Hirsch, A., Meyer, B. and Clark, T. (2015), Cubic C8: An Observable Allotrope of Carbon?. ChemPhysChem. doi: 10.1002/cphc.201500230, which has been published in final form at http://onlinelibrary.wiley.com/doi/10.1002/cphc.201500230/abstract?userIsAuthentica ted=false&deniedAccessCustomisedMessage=. This article may be used for non- commercial purposes in accordance With Wiley-VCH Terms and Conditions for self- archiving Cubic C8: An observable allotrope of carbon? Dmitry Sharapa[a], Andreas Hirsch[b], Bernd Meyer[a],[c] and Timothy Clark*[a],[d] Abstract: Ab initio and density-functional theory calculations have been used to investigate the structure, electronic properties, spectra and reactivity of cubic C8, which is predicted to be aromatic by Hirsch’s rule. Although highly strained and with a small amount of diradical character, the carbon cube represents a surprisingly deep minimum and should therefore be observable as an isolated molecule. It is, however, very reactive, both with itself and triplet oxygen. Calculated infrared, Raman and UV/vis spectra are provided to aid identification of cubic C8 should it be synthesised. [a] Prof. T. Clark, Prof. B. Meyer, D. Sharapa Computer-Chemie-Centrum, Department Chemie und Pharmazie Friedrich-Alexander-Universität Erlangen-Nürnberg Nägelsbachstraße 25, 91052 Erlangen, Germany. E-mail: [email protected] [b] Prof. A. Hirsch Lehrstuhl für Organische Chemie II, Department Chemie und Pharmazie Friedrich-Alexander-Universität Erlangen-Nürnberg Henkestrasse 42, 91054 Erlangen, Germany. [c] Prof. B. Meyer Interdisciplinary Center for Molecular Materials Friedrich-Alexander-Universität Erlangen-Nürnberg Nägelsbachstraße 25, 91052 Erlangen, Germany. -
Photoactivity and Optical Applications of Organic Materials Containing Selenium and Tellurium Cite This: Chem
Chemical Science View Article Online MINIREVIEW View Journal | View Issue Photoactivity and optical applications of organic materials containing selenium and tellurium Cite this: Chem. Sci.,2019,10,9182 a ab All publication charges for this article Gabrielle C. Hoover and Dwight S. Seferos * have been paid for by the Royal Society of Chemistry Sulfur-containing compounds, particularly derivatives of thiophene, are well studied for organic optoelectronic applications. Incorporating selenium or tellurium in place of sulfur imparts different physical properties due to the fundamental differences of these atoms relative to their lighter analogues. This has a profound influence on the properties of molecules and materials that incorporate chalcogens Received 23rd August 2019 that may ultimately lead to new opportunities and applications. This mini-review will focus on the Accepted 18th September 2019 quantitative and qualitative photophysical characteristics of organic materials containing selenium and DOI: 10.1039/c9sc04279b tellurium as well as their emerging applications as molecular photoactive species, including light- rsc.li/chemical-science emitting sensors, triplet sensitizers, and beyond. Creative Commons Attribution 3.0 Unported Licence. 1. Introduction has focused on semiconductor lms or nanocrystals such as CdSe or PbSe quantum dots or CdTe.6–12 In between lie classes of The chalcogens (O, S, Se, and Te) have attracted considerable organochalcogens, where selenium and tellurium have been attention for materials applications in the last few decades. In judiciously placed into otherwise organic materials. Such 13 14 the polymer electronics communities substantial attention has materials have been used as photovoltaics, transistors, 15 16 focused on the synthesis and properties of polythiophenes and thermoelectric generators, light emitting devices, and 17 their derivatives.1–5 In the inorganic materials space, much work sensors. -
Electronic State of the Molecular Oxygen Released by Catalase†
12842 J. Phys. Chem. A 2008, 112, 12842–12848 Electronic State of the Molecular Oxygen Released by Catalase† Mercedes Alfonso-Prieto,‡,§ Pietro Vidossich,‡,§ Antonio Rodrı´guez-Fortea,| Xavi Carpena,⊥ Ignacio Fita,⊥ Peter C. Loewen,# and Carme Rovira*,‡,§,∇ Laboratori de Simulacio´ Computacional i Modelitzacio´ (CoSMoLab), Parc Cientı´fic de Barcelona, Baldiri Reixac 10-12, 08028 Barcelona, Spain, Institut de Quı´mica Teo`rica i Computacional de la UniVersitat de Barcelona (IQTCUB), Departament de Quı´mica Fı´sica i Inorga`nica, UniVersitat RoVira i Virgili, Marcel.lı´ Domingo s/n, 43007 Tarragona, Spain, Institut de Biologia Molecular (IBMB-CSIC), Institut de Recerca Biome`dica (IRB), Parc Cientı´fic de Barcelona, Josep Samitier 1-5, 08028 Barcelona, Spain, Department of Microbiology, UniVersity of Manitoba, Winnipeg, MB R3T 2N2, Canada, and Institucio´ Catalana de Recerca i Estudis AVanc¸ats (ICREA), Passeig Lluı´s Companys, 23, 08018 Barcelona, Spain ReceiVed: February 20, 2008; ReVised Manuscript ReceiVed: July 17, 2008 In catalases, the high redox intermediate known as compound I (Cpd I) is reduced back to the resting •+ IV state by means of hydrogen peroxide in a 2-electron reaction [Cpd I (Por -Fe dO) + H2O2 f Enz III (Por-Fe ) + H2O + O2]. It has been proposed that this reaction takes place via proton transfer toward the distal His and hydride transfer toward the oxoferryl oxygen (H+/H- scheme) and some authors have related it to singlet oxygen generation. Here, we consider the possible reaction schemes and qualitatively analyze the electronic state of the species involved to show that the commonly used association of the H+/H- scheme with singlet oxygen production is not justified. -
Applications of Triplet-Photosensitizers and Development of Photochemical Methods
Portland State University PDXScholar Dissertations and Theses Dissertations and Theses 1-14-2020 Applications of Triplet-Photosensitizers and Development of Photochemical Methods Luke V. Lutkus Portland State University Follow this and additional works at: https://pdxscholar.library.pdx.edu/open_access_etds Part of the Chemistry Commons Let us know how access to this document benefits ou.y Recommended Citation Lutkus, Luke V., "Applications of Triplet-Photosensitizers and Development of Photochemical Methods" (2020). Dissertations and Theses. Paper 5417. https://doi.org/10.15760/etd.7290 This Dissertation is brought to you for free and open access. It has been accepted for inclusion in Dissertations and Theses by an authorized administrator of PDXScholar. Please contact us if we can make this document more accessible: [email protected]. Applications of Triplet-Photosensitizers and Development of Photochemical Methods by Luke V. Lutkus A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Chemistry Dissertation Committee: Theresa McCormick, Chair Mark Woods Rob Strongin Erik Sanchez Portland State University 2020 Abstract Photochemistry focuses on various aspects of the interaction of light with molecules. This work entails new methodology for fundamental measurements of photochemistry along with novel applications of triplet-photosenstizers. Herein described are two separate methodologies developed for the determination of the quantum yield. A method for the singlet oxygen quantum yield was developed that utilizes the reaction between singlet oxygen and dimethyl sulfoxide (DMSO) to produce dimethyl sulfone. The rate of the reaction is measured by the pressure decrease that results from the consumption of oxygen from the headspace of a sealed system. -
Using Singlet Oxygen to Synthesize Natural Products and Drugs † ‡ † ‡ Ashwini A
Review pubs.acs.org/CR Using Singlet Oxygen to Synthesize Natural Products and Drugs † ‡ † ‡ Ashwini A. Ghogare , and Alexander Greer*, , † Department of Chemistry, Brooklyn College, 2900 Bedford Avenue, Brooklyn, New York 11210, United States ‡ Ph.D. Program in Chemistry, The Graduate Center of the City University of New York, 365 Fifth Avenue, New York, New York 10016, United States 1 ABSTRACT: This Review describes singlet oxygen ( O2) in the organic synthesis of 1 1 targets on possible O2 biosynthetic routes. The visible-light sensitized production of O2 is not only useful for synthesis; it is extremely common in nature. This Review is intended to draw a logical link between flow and batch reactionsa combination that leads to the 1 current state of O2 in synthesis. CONTENTS 5.5.1. Bubbling Photoreactor Using a Dissolved Sensitizer 10022 1. INTRODUCTION 9994 5.5.2. Bubbling Photoreactor Using a 2. BACKGROUND 9994 “Shielded” Heterogeneous Sensitizer 10022 3. SCOPE OF THE REVIEW 9995 6. PROSPECTIVES 10024 4. SINGLET OXYGEN IN SYNTHESIS 9995 1 6.1. State of O2 Synthetic Science 10024 4.1. Background 9995 7. SUMMARY AND OUTLOOK 10025 4.2. Endoperoxides 9996 Author Information 10025 4.3. Carbasugars 9998 Corresponding Author 10025 4.4. Epoxides 9999 Notes 10025 4.5. Tropones and Tropolones 10002 Biographies 10025 4.6. Polycyclic Ethers and Polyols 10004 Acknowledgments 10025 4.7. Sterols 10007 Abbreviations 10025 4.8. Opioids 10008 References 10026 4.9. Ring-Fused Examples 10008 4.10. Phenols 10009 4.11. Self-Sensitized Examples 10010 1. INTRODUCTION 4.12. Indoles 10011 1 4.13.