Final Report, PPLC 2019-20
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Special Covid-19 Newsletter.Pdf
LINUS PAULING INSTITUTE OREGON STATE UNIVERSITY RESEARCH NEWSLETTER SPECIAL EDITION 2020 Nutrients for the immune system LOOK INSIDE ACCESS GRANTED Fighting COVID-19 with Big Data As US doctors fight COVID-19 throughout The N3C is spearheaded by Melissa IN THIS ISSUE the nation, an enormous amount of Haendel, PhD, principal investigator and useful data is being generated. Because Director of Translational Data Science Access of the emergent nature of this pandemic, at the Linus Pauling Institute. To propel Granted..................1 strategies to fight COVID-19 quickly evolve, this initiative, Dr. Haendel has brought From the Director....2 and valuable information from patient together more than 60 clinical centers records is scattered across the country. with the resources of the National Flattening the Institutes of Health. How can researchers find patterns and Curve.....................2 clues for treatment options in such a Supported in part by Oregon State Is IV Vitamin C widespread, disparate data stream? University and the Oregon Clinical and Effective Against Translational Research Institute at Oregon COVID-19?.............4 Enter the National COVID Cohort Health & Science University, the N3C will Collaborative, also known as the N3C. build, maintain, and regulate a new, Nutritional Strategies secure database housing electronic The N3C is a nationwide collaboration to Support the health records from COVID-19 patients. Immune System.......6 of clinicians, informaticians, and other biomedical researchers. The collaborative Putting the nation’s health data together is tasked with two goals: collect COVID-19- into one place is not as easy as it sounds. related health information into a centralized First of all, healthcare providers across data repository and create secure analytical the country use different record systems tools to process that data. -
Achieving Human and Machine Accessibility of Cited Data in Scholarly Publications
Achieving human and machine accessibility of cited data in scholarly publications Joan Starr1, Eleni Castro2, Merce` Crosas2, Michel Dumontier3, Robert R. Downs4, Ruth Duerr5, Laurel L. Haak6, Melissa Haendel7, Ivan Herman8, Simon Hodson9, Joe Hourcle´10, John Ernest Kratz1, Jennifer Lin11, Lars Holm Nielsen12, Amy Nurnberger13, Stefan Proell14, Andreas Rauber15, Simone Sacchi13, Arthur Smith16, Mike Taylor17 and Tim Clark18 1 California Digital Library, Oakland, CA, United States of America 2 Institute of Quantitative Social Sciences, Harvard University, Cambridge, MA, United States of America 3 Stanford University School of Medicine, Stanford, CA, United States of America 4 Center for International Earth Science Information Network (CIESIN), Columbia University, Palisades, NY, United States of America 5 National Snow and Ice Data Center, Boulder, CO, United States of America 6 ORCID, Inc., Bethesda, MD, United States of America 7 Oregon Health and Science University, Portland, OR, United States of America 8 World Wide Web Consortium (W3C)/Centrum Wiskunde en Informatica (CWI), Amsterdam, Netherlands 9 ICSU Committee on Data for Science and Technology (CODATA), Paris, France 10 Solar Data Analysis Center, NASA Goddard Space Flight Center, Greenbelt, MD, United States of America 11 Public Library of Science, San Francisco, CA, United States of America 12 European Organization for Nuclear Research (CERN), Geneva, Switzerland 13 Columbia University Libraries/Information Services, New York, NY, United States of America 14 SBA Research, Vienna, Austria 15 Institute of Software Technology and Interactive Systems, Vienna University of Technology/TU Wien, Austria 16 American Physical Society, Ridge, NY, United States of America 17 Elsevier, Oxford, United Kingdom 18 Harvard Medical School, Boston, MA, United States of America Submitted 15 December 2014 ABSTRACT Accepted 5 February 2015 Reproducibility and reusability of research results is an important concern in scien- Published 27 May 2015 tific communication and science policy. -
Academic Libraries As Scholarly Publishers
Getting the Word Out Academic Libraries as Scholarly Publishers Edited by Maria Bonn and Mike Furlough Association of College and Research Libraries A division of the American Library Association Chicago, Illinois 2015 The paper used in this publication meets the minimum requirements of Ameri- can National Standard for Information Sciences–Permanence of Paper for Print- ed Library Materials, ANSI Z39.48-1992. ∞ Library of Congress Cataloging-in-Publication Data Getting the word out : academic libraries as scholarly publishers / edited by Maria Bonn and Mike Furlough. pages cm Includes bibliographical references. ISBN 978-0-8389-8697-4 (paperback) -- ISBN 978-0-8389-8698-1 (pdf) -- ISBN 978-0-8389-8699-8 (ePub) -- ISBN 978-0-8389-8700-1 (Kindle) 1. Academic libraries--Publishing--United States. 2. Libraries and publish- ing--United States. 3. Libraries and electronic publishing--United States. 4. Library publications--United States. I. Bonn, Maria, editor. II. Furlough, Mike, editor. Z716.6.G48 2014 050.5’94--dc23 2014045104 Chapter 6, “Library-as-Publisher: Capacity Building for the Library Publishing Subfield,” by Katherine Skinner, Sarah Lippincott, Julie Speer, and Tyler Walters originally appeared in The Journal of Electronic Publishing, Volume 17, Issue 2: Education and Training for 21st Century Publishers, Spring 2014 (DOI: http:// dx.doi.org/10.3998/3336451.0017.207). Used here with permission. Copyright ©2015 by The Association of College & Research Libraries, a division of the American Library Association. All rights reserved except those which may be granted by Sections 107 and 108 of the Copyright Revision Act of 1976. Printed in the United States of America. -
Why Is Something More Needed on Contributorship?
Major challenges on authorship and concept of authorship - why is something more needed on contributorship? This manuscript (permalink) was automatically generated from data2health/contributorship@0de13d0 on August 4, 2020. Authors Nicole Vasilevsky 0000-0001-5208-3432 · nicolevasilevsky · n_vasilevsky · 6 roles Oregon Clinical and Translational Research Institute, Oregon Health & Science University; Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University · Funded by Grant# NCATS U24TR002306 Mohammad Hosseini 0000-0002-2385-985X · 3 roles Dublin City University Samantha Teplitzky 0000-0001-7071-332X · samteplitzky · 3 roles University of California, Berkeley Violeta Ilik 0000-0003-2588-3084 · vioil · 4 roles Library, Columbia University Ehsan Mohammadi 0000-0003-3481-6991 · 2 roles University of South Carolina Juliane Schneider 0000-0002-7664-3331 · pitviper6 · 3 roles Harvard University Barbara Kern 0000-0002-1184-911X · 2 roles University of Chicago Julien Colomb 0000-0002-3127-5520 · 4 roles Humboldt-Universität zu Berlin, SFB1315, Institut für Biologie, Charitéplatz 1, 10117 Berlin · Funded by The German Research Foundation, Grant Number 327654276: SFB 1315 Scott Edmunds 0000-0001-6444-1436 · 3 roles GigaScience Karen Gutzman 0000-0001-6331-4451 · 3 roles Galter Health Sciences Library and Learning Center, Northwestern University Feinberg School of Medicine · Funded by Grant# UL1TR001422 Daniel Himmelstein 0000-0002-3012-7446 · dhimmel · 3 roles University of Pennsylvania Marijane White 0000-0001-5059-4132 -
Abstract Index (Pdf)
Abstracts Abstract Index Research Highlights Prediction of Putative Causal Variants and Genes at BMD GWAS Loci Basel Al‐Barghouthi Identification of Genotype‐Phenotype Associations in Phelan‐McDermid Syndrome Using Patient‐Sourced Data Paul Avillach Understanding Lung Tissue Heterogeneity in Idiopathic Pulmonary Fibrosis Panayiotis Benos A Bayesian Causal Inference Method for Identifying Cancer Drivers of Individual Tumors Chunhui Cai Finding the Signal in the Noise: Social Media Early Hospital Notification of Mass Casualty Events Rachael Callcut A Need for Better Data Sharing Policies: A Review of Data Sharing Policies in Biomedical Journals Robin Champieux Analysis of RNA Editing in Cancer Epithelial‐to‐Mesenchymal Transition Tracey Chan Cataloguing and Curating BRCA1/2 Genetic Variation Melissa Cline Big Data Imaging Processing & Analysis (BigDIPA) Michelle Digman Predicting Adverse Cardiovascular Events for Tyrosine Kinase Inhibitors From Molecular Features Anders Dohlman Consumer Wearable Devices for Health Surveillance and Disease Monitoring Jessilyn Dunn Knowledge‐Guided Prioritization of Genes Determinant of Drug Resistance using ProGENI Amin Emad Toward a Causome of the Brain Clark Glymour IRRMC ‐ A Public Database of Macromolecular Diffraction Experiments Marek Grabowski Predicting Phenotypes of Osteoarthritis Progression Eni Halilaj Large‐Scale Biological Text Mining: A Data‐Driven Approach Jiawei Han BD2K and Global Genomic Data Sharing David Haussler Modeling Disease Progression From Sparsely Sampled Observations Lukasz Kidzinski -
Council Agenda Packet
Council Meeting Tuesday, July 28th, 2020 Location: Teleconference Table of Contents 1 Agenda 3 Minutes: June 23rd, 2020 9 Administrator TBD Public Works 20 Planning 21 Sheriff 22 Court 23 Library 24 Resolution 2020.17: Line Item Designation [COVID-19] 25 Council Values 28 Council Goals 35 Homeowner Weed Abatement Appeal Information TBD Draft RV Ordinance (City Attorney) 38 Capital Improvement Plan Revision 40 Large Document Location FY 2020.2021 Master Things to Do List 41 Citizen Mask Request & Mask Article (Provided by Councilor Gerber) 48 Property Owner Correspondence 50 Sharing Hands Communication 51 CARES Act Award 52 Court Changes 53 RAIN Additional Invoice 54 OPRD Comment Period Notice 56 ODOT Project Notice 57 Broadband Funding 58 CLHS Thank You 59 CIS Coverage 61 League of Oregon Cities & CIS Special Legislative Session Summary 69 League of Oregon Cities Program Offer 64 June Financials August is Council Recess Page 1 of 70 Council Meeting Tuesday, July 28th, 2020 Location: Teleconference See direction posted at City Hall and the City website. AGENDA Regular Session 7:00 p.m. 1) CALL TO ORDER 2) ROLL CALL 3) PLEDGE OF ALLEGIANCE 4) ADDITIONS OR DELETIONS TO AGENDA 5) MINUTES: June 23rd, 2020 6) PUBLIC HEARINGS OR PRESENTATIONS: 7) DEPARTMENT REPORTS: A. Sheriff B. Public Works C. Administration D. Planning E. Library F. Court G. Council 8) CITIZEN COMMENTS (Non-agenda & Agenda items) Council asks that comments be limited to three minutes per audience member. Please state your name and address prior to commenting for the public record. This Agenda is a specific list of the subjects to be discussed at the meeting. -
OSU Research Office
OSU Research Office FY18 ANNUAL REPORT Cynthia Sagers, Vice President for Research OREGON STATE UNIVERSITY | A312 KERR ADMN CORVALLIS OR RO Annual Report FY18 RESEARCH OFFICE MISSION Oregon State University is entrusted to build a future that is smarter, healthier, more prosperous and more just. Research is foundational to that vision. It provides transformational educational experiences for our students, intellectual challenges for our faculty, and a means to broaden our impact through the world. The mission of the Research Office (RO) is to ensure that our research investments are sound, that our researchers are well equipped to advance their fields of study, and that the work of our faculty, students and staff has impacts in Oregon and beyond. RESEARCH OFFICE VISION We envision a research enterprise that is fully integrated into the communities we serve, that is driven by a fundamental quest for knowledge, that inspires creativity and innovation, and that is renowned for delivering outcomes that matter. RESEARCH OFFICE VALUES We welcome opposing opinions, invite a diversity of perspectives, advocate transparency in all aspects of office business, and create a community of care and respect. 1 RO Annual Report FY18 RESEARCH OFFICE ANNUAL REPORT FY18 EXECUTIVE SUMMARY BACKGROUND The Research Office (RO) provides an annual report to the President and other university executives to assist with their governance and oversight responsibilities. The RO serves as a key resource to Oregon State University, providing leadership on issues concerning the research enterprise, including research development, commercial activity, research integrity and sponsored programs. The RO Work Plan 2018-2023 is provided in Attachment 1.