bioRxiv preprint doi: https://doi.org/10.1101/229864; this version posted December 7, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Speciation in sympatry with ongoing secondary gene flow and an olfactory trigger 2 in a radiation of Cameroon cichlids 3 4 Jelmer W. Poelstra1,2, Emilie J. Richards1, & Christopher H. Martin1* 5 6 1 Department of Biology, University of North Carolina at Chapel Hill, 7 Chapel Hill, NC 27599-3280 8 2 Department of Biology, Duke University, Durham NC 27708 9 Keywords: sympatric speciation, genomics, whole-genome sequencing, population genetics, 10 demographics, coalescent, cichlids 11 Running title: sympatric speciation with gene flow 12 *Corresponding author:
[email protected] 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 bioRxiv preprint doi: https://doi.org/10.1101/229864; this version posted December 7, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 34 Abstract 35 Whether speciation can happen in the absence of geographical barriers and if so, under which 36 conditions, is a fundamental question in our understanding of the evolution of new species. Among 37 candidates for sympatric speciation, Cameroon crater lake cichlid radiations have been considered 38 the most compelling.