Controversies and Advances in the Management of Wilms' Tumour
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Nucleoporin 107, 62 and 153 Mediate Kcnq1ot1 Imprinted Domain Regulation in Extraembryonic Endoderm Stem Cells
ARTICLE DOI: 10.1038/s41467-018-05208-2 OPEN Nucleoporin 107, 62 and 153 mediate Kcnq1ot1 imprinted domain regulation in extraembryonic endoderm stem cells Saqib S. Sachani 1,2,3,4, Lauren S. Landschoot1,2, Liyue Zhang1,2, Carlee R. White1,2, William A. MacDonald3,4, Michael C. Golding 5 & Mellissa R.W. Mann 3,4 1234567890():,; Genomic imprinting is a phenomenon that restricts transcription to predominantly one par- ental allele. How this transcriptional duality is regulated is poorly understood. Here we perform an RNA interference screen for epigenetic factors involved in paternal allelic silen- cing at the Kcnq1ot1 imprinted domain in mouse extraembryonic endoderm stem cells. Multiple factors are identified, including nucleoporin 107 (NUP107). To determine NUP107’s role and specificity in Kcnq1ot1 imprinted domain regulation, we deplete Nup107, as well as Nup62, Nup98/96 and Nup153. Nup107, Nup62 and Nup153, but not Nup98/96 depletion, reduce Kcnq1ot1 noncoding RNA volume, displace the Kcnq1ot1 domain from the nuclear periphery, reactivate a subset of normally silent paternal alleles in the domain, alter histone modifications with concomitant changes in KMT2A, EZH2 and EHMT2 occupancy, as well as reduce cohesin interactions at the Kcnq1ot1 imprinting control region. Our results establish an important role for specific nucleoporins in mediating Kcnq1ot1 imprinted domain regulation. 1 Departments of Obstetrics & Gynaecology, and Biochemistry, Western University, Schulich School of Medicine and Dentistry, London, ON N6A 5W9, Canada. 2 Children’s Health Research Institute, London, ON N6C 2V5, Canada. 3 Departments of Obstetrics, Gynecology and Reproductive Sciences, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA. 4 Magee-Womens Research Institute, Pittsburgh, PA 15213, USA. -
Functional Classification of Long Non-Coding Rnas by K-Mer Content
ARTICLES https://doi.org/10.1038/s41588-018-0207-8 Functional classification of long non-coding RNAs by k-mer content Jessime M. Kirk1,2, Susan O. Kim1,8, Kaoru Inoue1,8, Matthew J. Smola3,9, David M. Lee1,4, Megan D. Schertzer1,4, Joshua S. Wooten1,4, Allison R. Baker" "1,10, Daniel Sprague1,5, David W. Collins6, Christopher R. Horning6, Shuo Wang6, Qidi Chen6, Kevin M. Weeks" "3, Peter J. Mucha7 and J. Mauro Calabrese" "1* The functions of most long non-coding RNAs (lncRNAs) are unknown. In contrast to proteins, lncRNAs with similar functions often lack linear sequence homology; thus, the identification of function in one lncRNA rarely informs the identification of function in others. We developed a sequence comparison method to deconstruct linear sequence relationships in lncRNAs and evaluate similarity based on the abundance of short motifs called k-mers. We found that lncRNAs of related function often had similar k-mer profiles despite lacking linear homology, and that k-mer profiles correlated with protein binding to lncRNAs and with their subcellular localization. Using a novel assay to quantify Xist-like regulatory potential, we directly demonstrated that evolutionarily unrelated lncRNAs can encode similar function through different spatial arrangements of related sequence motifs. K-mer-based classification is a powerful approach to detect recurrent relationships between sequence and function in lncRNAs. he human genome expresses thousands of lncRNAs, several This problem extends to the thousands of lncRNAs that lack char- of which regulate fundamental cellular processes. Still, the acterized functions. Toverwhelming majority of lncRNAs lack characterized func- tion and it is likely that physiologically important lncRNAs remain Results to be identified. -
Depletion of Kcnq1ot1 Non-Coding RNA Does Not Affect Imprinting Maintenance in Stem Cells Michael C
DEVELOPMENT AND STEM CELLS RESEARCH ARTICLE 3667 Development 138, 3667-3678 (2011) doi:10.1242/dev.057778 © 2011. Published by The Company of Biologists Ltd Depletion of Kcnq1ot1 non-coding RNA does not affect imprinting maintenance in stem cells Michael C. Golding1,2,3,*,†, Lauren S. Magri1,2,3,†, Liyue Zhang2,3, Sarah A. Lalone1,2,3, Michael J. Higgins4 and Mellissa R. W. Mann1,2,3,‡ SUMMARY To understand the complex regulation of genomic imprinting it is important to determine how early embryos establish imprinted gene expression across large chromosomal domains. Long non-coding RNAs (ncRNAs) have been associated with the regulation of imprinting domains, yet their function remains undefined. Here, we investigated the mouse Kcnq1ot1 ncRNA and its role in imprinted gene regulation during preimplantation development by utilizing mouse embryonic and extra-embryonic stem cell models. Our findings demonstrate that the Kcnq1ot1 ncRNA extends 471 kb from the transcription start site. This is significant as it raises the possibility that transcription through downstream genes might play a role in their silencing, including Th, which we demonstrate possesses maternal-specific expression during early development. To distinguish between a functional role for the transcript and properties inherent to transcription of long ncRNAs, we employed RNA interference-based technology to deplete Kcnq1ot1 transcripts. We hypothesized that post-transcriptional depletion of Kcnq1ot1 ncRNA would lead to activation of normally maternal-specific protein-coding genes on the paternal chromosome. Post-transcriptional short hairpin RNA-mediated depletion in embryonic stem, trophoblast stem and extra-embryonic endoderm stem cells had no observable effect on the imprinted expression of genes within the domain, or on Kcnq1ot1 imprinting center DNA methylation, although a significant decrease in Kcnq1ot1 RNA signal volume in the nucleus was observed. -
WAGR Syndrome: Clinical Features and Guidelines for Management
WAGR syndrome: clinical features and guidelines for management Kelly Trout, BSN, RN International WAGR Syndrome Association 2020 Introduction WAGR syndrome is a rare multiple congenital-anomaly syndrome caused by interstitial deletion of the distal portion of chromosome 11p13. Deletion size varies between individuals from 1 million to 26.5 million base pairs, with an average of 11 million base pairs. Variability in size of the genetic deletion is thought to account for the variable phenotype. WAGR is an acronym for the most prominent features: W is for Wilms tumor, A for aniridia, G for genitourinary anomalies, and R for range of developmental delays. Wilms tumor and genital anomalies are caused by deletion of the WT1 tumor-suppressor gene, and aniridia is caused by deletion of the PAX6 ocular development gene. Developmental delays are presumed to be the result of deletion of as yet unidentified genes in the region. Most cases are identified by chromosome studies of children with isolated aniridia and are due to de novo deletions, although a few familial translocations have been reported. Individuals with WAGR syndrome have a high risk for development of Wilms tumor and late-onset renal failure, as well as a variety of additional associated conditions. Diagnosis ● Most cases of WAGR syndrome are identified in infants with isolated aniridia, 30% of whom will be positive for the characteristic deletion (11p13) ● In rare cases, aniridia may not be present. Children with Wilms tumor and genital anomalies may also warrant genetic testing ● -
Wilms Tumour in Beckwith–Wiedemann Syndrome and Loss of Methylation at Imprinting Centre 2: Revisiting Tumour Surveillance Guidelines
European Journal of Human Genetics (2017) 25, 1031–1039 & 2017 Macmillan Publishers Limited, part of Springer Nature. All rights reserved 1018-4813/17 www.nature.com/ejhg ARTICLE Wilms tumour in Beckwith–Wiedemann Syndrome and loss of methylation at imprinting centre 2: revisiting tumour surveillance guidelines Jack Brzezinski1,2,3,12, Cheryl Shuman1,4,5,6,12, Sanaa Choufani1, Peter Ray1,6,7, Dmitiri J Stavropoulos7,8, Raveen Basran7,8, Leslie Steele6,7, Nicole Parkinson5,6,7, Ronald Grant2,9, Paul Thorner7,8, Armando Lorenzo10,11 and Rosanna Weksberg*,1,3,4,6,9 Beckwith–Wiedemann Syndrome (BWS) is an overgrowth syndrome caused by a variety of molecular changes on chromosome 11p15.5. Children with BWS have a significant risk of developing Wilms tumours with the degree of risk being dependent on the underlying molecular mechanism. In particular, only a relatively small number of children with loss of methylation at the centromeric imprinting centre (IC2) were reported to have developed Wilms tumour. Discontinuation of tumour surveillance for children with BWS and loss of methylation at IC2 has been proposed in several recent publications. We report here three children with BWS reported to have loss of methylation at IC2 on clinical testing who developed Wilms tumour or precursor lesions. Using multiple molecular approaches and multiple tissues, we reclassified one of these cases to paternal uniparental disomy for chromosome 11p15.5. These cases highlight the current challenges in definitively assigning tumour risk based on molecular classification in BWS. The confirmed cases of loss of methylation at IC2 also suggest that the risk of Wilms tumour in this population is not as low as previously thought. -
MECHANISMS in ENDOCRINOLOGY: Novel Genetic Causes of Short Stature
J M Wit and others Genetics of short stature 174:4 R145–R173 Review MECHANISMS IN ENDOCRINOLOGY Novel genetic causes of short stature 1 1 2 2 Jan M Wit , Wilma Oostdijk , Monique Losekoot , Hermine A van Duyvenvoorde , Correspondence Claudia A L Ruivenkamp2 and Sarina G Kant2 should be addressed to J M Wit Departments of 1Paediatrics and 2Clinical Genetics, Leiden University Medical Center, PO Box 9600, 2300 RC Leiden, Email The Netherlands [email protected] Abstract The fast technological development, particularly single nucleotide polymorphism array, array-comparative genomic hybridization, and whole exome sequencing, has led to the discovery of many novel genetic causes of growth failure. In this review we discuss a selection of these, according to a diagnostic classification centred on the epiphyseal growth plate. We successively discuss disorders in hormone signalling, paracrine factors, matrix molecules, intracellular pathways, and fundamental cellular processes, followed by chromosomal aberrations including copy number variants (CNVs) and imprinting disorders associated with short stature. Many novel causes of GH deficiency (GHD) as part of combined pituitary hormone deficiency have been uncovered. The most frequent genetic causes of isolated GHD are GH1 and GHRHR defects, but several novel causes have recently been found, such as GHSR, RNPC3, and IFT172 mutations. Besides well-defined causes of GH insensitivity (GHR, STAT5B, IGFALS, IGF1 defects), disorders of NFkB signalling, STAT3 and IGF2 have recently been discovered. Heterozygous IGF1R defects are a relatively frequent cause of prenatal and postnatal growth retardation. TRHA mutations cause a syndromic form of short stature with elevated T3/T4 ratio. Disorders of signalling of various paracrine factors (FGFs, BMPs, WNTs, PTHrP/IHH, and CNP/NPR2) or genetic defects affecting cartilage extracellular matrix usually cause disproportionate short stature. -
Frasier Syndrome: a Cause of Focal Segmental Glomerulosclerosis in a 46,XX Female
BRIEF COMMUNICATIONS J Am Soc Nephrol 10: 2215–2218, 1999 Frasier Syndrome: A Cause of Focal Segmental Glomerulosclerosis in a 46,XX Female LAURIE DEMMER,* WILLIAM PRIMACK,*† VALERIE LOIK,‡ ROSALIND BROWN,* NICOLE THERVILLE,§ and KEN MCELREAVEY§ *Department of Pediatrics, University of Massachusetts Memorial Health Care, Worcester, Massachusetts; †Fallon Clinic, Worcester, Massachusetts; ‡Department of Obstetrics & Gynecology, Baystate Medical Center, Springfield, Massachusetts; and §Department of Human Immunogenetics, Institut Pasteur, Paris, France. Abstract. The description of Frasier syndrome until now has diagnosis of Frasier syndrome with 46,XY gonadal dysgenesis, been restricted to XY females with gonadal dysgenesis, pro- whereas her sister has progressive glomerulopathy but a 46,XX gressive glomerulopathy, and a significant risk of gonadoblas- karyotype and normal female development. This indicates that toma. Mutations in the donor splice site in intron 9 of the the proper WT1 isoform ratio is critical for renal and testicular Wilms’ tumor (WT1) gene have been shown to cause Frasier development, but apparently does not affect either ovarian syndrome and are distinct from WT1 exon mutations associ- development or function. It is proposed that the clinical defi- ated with Denys-Drash syndrome. The WT1 gene, which is nition of Frasier syndrome should be broadened to include essential for normal kidney and gonadal development, encodes 46,XX females with normal genital development and focal a zinc finger transcription factor. The intron 9 alternative splice segmental glomerulosclerosis associated with a WT1 intron 9 donor site mutation seen in Frasier syndrome leads to loss of donor splice site mutation. Nephrologists need to consider the three amino acids (1KTS isoform), thus disrupting the normal possibility of this heritable syndrome in evaluation of females ratio of the 1KTS/2KTS isoforms critical for proper gonadal with focal segmental glomerulosclerosis and to consider their and renal development. -
WAGR Syndrome
International J. of Healthcare and Biomedical Research, Volume: 2, Issue: 4, July 2014, Pages 131-134 Case Report: WAGR Syndrome 1Dr.Prathamesh Patil , 2Dr. C Ashok kumar, 3Dr. Shashank Panwar , 4Dr. R Somdeepak Reddy , 5Dr. Pratik Gogri 1Junior Resident, Pediatrics, Pravara Institute of Medical sciences, Loni, Maharashtra, India 2 Associate Professor of Pediatrics, Pravara Institute of Medical sciences, Loni, Maharashtra, India 3 Junior Resident, Pediatrics, Pravara Institute of Medical sciences, Loni, Maharashtra, India 4 Junior Resident, Pediatrics, Pravara Institute of Medical sciences, Loni, Maharashtra, India 5 Junior Resident, Opthalmology, Pravara Institute of Medical sciences, Loni, Maharashtra, India Corresponding author: Dr. Prathamesh Patil; Email: [email protected] Abstract: WAGR Syndrome is a multiple congenital anomaly syndrome characterized by interstitial deletion of distal portion of chromosome 11p13. It is a gene deletion syndrome. WAGR is an acronym for W- Wilms tumor, A- aniridia, G- genital anomalies and R- mental retardation. Wilms tumor and male genital anomalies are caused by deletion of the WT1 tumor suppressor gene, and aniridia is caused by deletion of PAX6 ocular developmental gene. Mental retardation is thought to be a due of deletion of multiple as yet unidentified genes in the region. The patient needs a multidisciplinary management regimen encompassing the services of an ophthalmologist, radiologist, a pediatrician and pediatric surgeon. Herewith we reported a patient of developmental delay with abdominal distension, child also had aniridia. The child was managed by multidisciplinary approach. Key words: WAGR Syndrome Background: she was found to have aniridia, Wilms tumor and WAGR Syndrome is a multiple congenital anomaly mental retardation. The findings that aniridia is syndrome characterized by interstitial deletion of associated with Wilms tumor made that the findings distal portion of chromosome 11p13. -
Two Maternal Duplications Involving the CDKN1C Gene Are Associated
Boonen et al. Clinical Epigenetics (2016) 8:69 DOI 10.1186/s13148-016-0236-z SHORT REPORT Open Access Two maternal duplications involving the CDKN1C gene are associated with contrasting growth phenotypes Susanne Eriksen Boonen1†, Andrea Freschi2†, Rikke Christensen1, Federica Maria Valente2, Dorte Launholt Lildballe1, Lucia Perone3, Orazio Palumbo4, Massimo Carella4, Niels Uldbjerg5, Angela Sparago2, Andrea Riccio2,6* and Flavia Cerrato2* Abstract Background: The overgrowth-associated Beckwith-Wiedemann syndrome (BWS) and the undergrowth-associated Silver-Russell syndrome (SRS) are characterized by heterogeneous molecular defects affecting a large imprinted gene cluster at chromosome 11p15.5-p15.4. While maternal and paternal duplications of the entire cluster consistently result in SRS and BWS, respectively, the phenotypes associated with smaller duplications are difficult to predict due to the complexity of imprinting regulation. Here, we describe two cases with novel inherited partial duplications of the centromeric domain on chromosome 11p15 associated with contrasting growth phenotypes. Findings: In a male patient affected by intrauterine growth restriction and postnatal short stature, we identified an in cis maternally inherited duplication of 0.88 Mb including the CDKN1C gene that was significantly up-regulated. The duplication did not include the long non-coding RNA KCNQ1OT1 nor the imprinting control region of the centromeric domain (KCNQ1OT1:TSS-DMR or ICR2) in which methylation was normal. In the mother, also referring a growth restriction phenotype in her infancy, the duplication was de novo and present on her paternal chromosome. Adifferentin cis maternal duplication, 1.13 Mb long and including the abovementioned duplication, was observed in a child affected by Tetralogy of Fallot but with normal growth. -
Construction of a Natural Panel of 11P11.2 Deletions and Further Delineation of the Critical Region Involved in Potocki–Shaffer Syndrome
European Journal of Human Genetics (2005) 13, 528–540 & 2005 Nature Publishing Group All rights reserved 1018-4813/05 $30.00 www.nature.com/ejhg ARTICLE Construction of a natural panel of 11p11.2 deletions and further delineation of the critical region involved in Potocki–Shaffer syndrome Keiko Wakui1,12, Giuliana Gregato2,3,12, Blake C Ballif2, Caron D Glotzbach2,4, Kristen A Bailey2,4, Pao-Lin Kuo5, Whui-Chen Sue6, Leslie J Sheffield7, Mira Irons8, Enrique G Gomez9, Jacqueline T Hecht10, Lorraine Potocki1,11 and Lisa G Shaffer*,2,4 1Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX, USA; 2Health Research and Education Center, Washington State University, Spokane, WA, USA; 3Dip. Patologia Umana ed Ereditaria, Sez. Biologia Generale e Genetica Medica, Universita` degli Studi di Pavia, Italy; 4Sacred Heart Medical Center, Spokane, WA, USA; 5Department of Obstetrics and Gynecology, National Cheng-Kung University Medical College, Taiwan; 6Department of Pediatrics, Taipei Municipal Women and Children’s Hospital, Taiwan; 7Genetic Health Services Victoria, Murdoch Children’s Research Institute, Department of Paediatrics, University of Melbourne, Victoria, Australia; 8Division of Genetics, Department of Medicine, Children’s Hospital, Harvard Medical School, Boston, MA, USA; 9Area de Gene´tica, Centro de Desarrollo Infantil y Departamento de Pediatrı´a Hospital Materno Infantil-Hospital Regional Universitario ‘Infanta Cristina’, Badajoz, Spain; 10Department of Pediatrics, University of Texas Medical School at Houston, TX, USA; 11Texas Children’s Hospital, Houston, TX, USA Potocki–Shaffer syndrome (PSS) is a contiguous gene deletion syndrome that results from haploinsufficiency of at least two genes within the short arm of chromosome 11[del(11)(p11.2p12)]. -
Wagr Syndrome Information
CHROMOSOME DISORDER OUTREACH WAGR SYNDROME INFORMATION WAGR Syndrome WAGR is an acronym from the first letters of the mainmanifestations of this condition: Wilms tumor (W), aniridia (A), genital abnormalities (G) and retardation (R). The association of these defects has been known since the 1960s, but the chromosomal etiology of this syndrome was first reported in 1978-1979 (1). The chromosomal segment 11p13 includes two nearby genes – PAX6 and WT1, and the deletion of these genes determines the main manifestations of the syndrome. WAGR is a relatively common condition; at least 200 patients have been reported so far. The first manifestation of the syndrome is aniridia (absence of the iris). This defect may be revealed upon the examination of a newborn baby. Aniridia may be complete or partial. Glaucoma and cataracts often develop as a consequence of aniridia. Aniridia itself is caused by a mutation in the PAX6 gene and in many families this defect is inherited in an autosomal dominant manner. If however aniridia in a newborn baby is sporadic it is a strong indication for a cytogenetic examination to exclude deletion 11p13 underlying this eye defect. At least one third of patients with sporadic aniridia may have 11p13 deletion and (as a result) other manifestations of WAGR syndrome. Molecular cytogenetic examinations show that in rare instances aniridia may be caused by deletions of the regulatory elements nearby the PAX6 gene, but the gene itself may be unaffected (2). Genital abnormalities vary from one patient to another. Most boys reveal cryptorchidism. Hypospadias or ambiguous genitalia are relatively uncommon. Girls usually do not reveal genital abnormalities, although there are reports of streaked ovaries, hypoplastic or bicornuate (a type of congenital uterine malformation or müllerian duct anomalies in which the uterus page 1 appears to be heart shaped) uterus, etc. -
Expression of KCNQ1OT1, CDKN1C, H19, and PLAGL1 and The
Robbins et al. Journal of Biomedical Science 2012, 19:95 http://www.jbiomedsci.com/content/19/1/95 RESEARCH Open Access Expression of KCNQ1OT1, CDKN1C, H19, and PLAGL1 and the methylation patterns at the KvDMR1 and H19/IGF2 imprinting control regions is conserved between human and bovine Katherine Marie Robbins, Zhiyuan Chen, Kevin Dale Wells and Rocío Melissa Rivera* Abstract Background: Beckwith-Wiedemann syndrome (BWS) is a loss-of-imprinting pediatric overgrowth syndrome. The primary features of BWS include macrosomia, macroglossia, and abdominal wall defects. Secondary features that are frequently observed in BWS patients are hypoglycemia, nevus flammeus, polyhydramnios, visceromegaly, hemihyperplasia, cardiac malformations, and difficulty breathing. BWS is speculated to occur primarily as the result of the misregulation of imprinted genes associated with two clusters on chromosome 11p15.5, namely the KvDMR1 and H19/IGF2. A similar overgrowth phenotype is observed in bovine and ovine as a result of embryo culture. In ruminants this syndrome is known as large offspring syndrome (LOS). The phenotypes associated with LOS are increased birth weight, visceromegaly, skeletal defects, hypoglycemia, polyhydramnios, and breathing difficulties. Even though phenotypic similarities exist between the two syndromes, whether the two syndromes are epigenetically similar is unknown. In this study we use control Bos taurus indicus X Bos taurus taurus F1 hybrid bovine concepti to characterize baseline imprinted gene expression and DNA methylation status of imprinted domains known to be misregulated in BWS. This work is intended to be the first step in a series of experiments aimed at determining if LOS will serve as an appropriate animal model to study BWS.