Plant Callose Synthase Complexes
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Bacteria Belonging to Pseudomonas Typographi Sp. Nov. from the Bark Beetle Ips Typographus Have Genomic Potential to Aid in the Host Ecology
insects Article Bacteria Belonging to Pseudomonas typographi sp. nov. from the Bark Beetle Ips typographus Have Genomic Potential to Aid in the Host Ecology Ezequiel Peral-Aranega 1,2 , Zaki Saati-Santamaría 1,2 , Miroslav Kolaˇrik 3,4, Raúl Rivas 1,2,5 and Paula García-Fraile 1,2,4,5,* 1 Microbiology and Genetics Department, University of Salamanca, 37007 Salamanca, Spain; [email protected] (E.P.-A.); [email protected] (Z.S.-S.); [email protected] (R.R.) 2 Spanish-Portuguese Institute for Agricultural Research (CIALE), 37185 Salamanca, Spain 3 Department of Botany, Faculty of Science, Charles University, Benátská 2, 128 01 Prague, Czech Republic; [email protected] 4 Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology of the Academy of Sciences of the Czech Republic, 142 20 Prague, Czech Republic 5 Associated Research Unit of Plant-Microorganism Interaction, University of Salamanca-IRNASA-CSIC, 37008 Salamanca, Spain * Correspondence: [email protected] Received: 4 July 2020; Accepted: 1 September 2020; Published: 3 September 2020 Simple Summary: European Bark Beetle (Ips typographus) is a pest that affects dead and weakened spruce trees. Under certain environmental conditions, it has massive outbreaks, resulting in attacks of healthy trees, becoming a forest pest. It has been proposed that the bark beetle’s microbiome plays a key role in the insect’s ecology, providing nutrients, inhibiting pathogens, and degrading tree defense compounds, among other probable traits. During a study of bacterial associates from I. typographus, we isolated three strains identified as Pseudomonas from different beetle life stages. In this work, we aimed to reveal the taxonomic status of these bacterial strains and to sequence and annotate their genomes to mine possible traits related to a role within the bark beetle holobiont. -
Metabolic Control of Hyaluronan Synthases
MATBIO-00997; No of Pages 6 Matrix Biology xxx (2013) xxx–xxx Contents lists available at ScienceDirect Matrix Biology journal homepage: www.elsevier.com/locate/matbio Metabolic control of hyaluronan synthases Davide Vigetti, Manuela Viola, Evgenia Karousou, Giancarlo De Luca, Alberto Passi ⁎ Dipartimento di Scienze Chirurgiche e Morfologiche, Università degli Studi dell'Insubria, via J.H. Dunant 5, 21100 Varese, Italy article info abstract Available online xxxx Hyaluronan (HA) is a glycosaminoglycan composed by repeating units of D-glucuronic acid (GlcUA) and N-acetylglucosamine (GlcNAc) that is ubiquitously present in the extracellular matrix (ECM) where it has a Keywords: critical role in the physiology and pathology of several mammalian tissues. HA represents a perfect environment Glycosaminoglycan in which cells can migrate and proliferate. Moreover, several receptors can interact with HA at cellular UDP-GlcUA level triggering multiple signal transduction responses. The control of the HA synthesis is therefore critical UDP-GlcNAc in ECM assembly and cell biology; in this review we address the metabolic regulation of HA synthesis. In AMPK O-GlcNAcylation contrast with other glycosaminoglycans, which are synthesized in the Golgi apparatus, HA is produced at the HBP plasma membrane by HA synthases (HAS1-3), which use cytoplasmic UDP-glucuronic acid and UDP-N- acetylglucosamine as substrates. UDP-GlcUA and UDP-hexosamine availability is critical for the synthesis of GAGs, which is an energy consuming process. AMP activated protein kinase (AMPK), which is considered a sensor of the energy status of the cell and is activated by low ATP:AMP ratio, leads to the inhibition of HA secretion by HAS2 phosphorylation at threonine 110. -
1/05661 1 Al
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date _ . ... - 12 May 2011 (12.05.2011) W 2 11/05661 1 Al (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every C12Q 1/00 (2006.0 1) C12Q 1/48 (2006.0 1) kind of national protection available): AE, AG, AL, AM, C12Q 1/42 (2006.01) AO, AT, AU, AZ, BA, BB, BG, BH, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, DO, (21) Number: International Application DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, PCT/US20 10/054171 HN, HR, HU, ID, IL, IN, IS, JP, KE, KG, KM, KN, KP, (22) International Filing Date: KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, 26 October 2010 (26.10.2010) ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PE, PG, PH, PL, PT, RO, RS, RU, SC, SD, (25) Filing Language: English SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, (26) Publication Language: English TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (30) Priority Data: (84) Designated States (unless otherwise indicated, for every 61/255,068 26 October 2009 (26.10.2009) US kind of regional protection available): ARIPO (BW, GH, GM, KE, LR, LS, MW, MZ, NA, SD, SL, SZ, TZ, UG, (71) Applicant (for all designated States except US): ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, MD, RU, TJ, MYREXIS, INC. -
An Evolving Hierarchical Family Classification for Glycosyltransferases
doi:10.1016/S0022-2836(03)00307-3 J. Mol. Biol. (2003) 328, 307–317 COMMUNICATION An Evolving Hierarchical Family Classification for Glycosyltransferases Pedro M. Coutinho1, Emeline Deleury1, Gideon J. Davies2 and Bernard Henrissat1* 1Architecture et Fonction des Glycosyltransferases are a ubiquitous group of enzymes that catalyse the Macromole´cules Biologiques transfer of a sugar moiety from an activated sugar donor onto saccharide UMR6098, CNRS and or non-saccharide acceptors. Although many glycosyltransferases catalyse Universite´s d’Aix-Marseille I chemically similar reactions, presumably through transition states with and II, 31 Chemin Joseph substantial oxocarbenium ion character, they display remarkable diversity Aiguier, 13402 Marseille in their donor, acceptor and product specificity and thereby generate a Cedex 20, France potentially infinite number of glycoconjugates, oligo- and polysacchar- ides. We have performed a comprehensive survey of glycosyltransferase- 2Structural Biology Laboratory related sequences (over 7200 to date) and present here a classification of Department of Chemistry, The these enzymes akin to that proposed previously for glycoside hydrolases, University of York, Heslington into a hierarchical system of families, clans, and folds. This evolving York YO10 5YW, UK classification rationalises structural and mechanistic investigation, harnesses information from a wide variety of related enzymes to inform cell biology and overcomes recurrent problems in the functional prediction of glycosyltransferase-related open-reading frames. q 2003 Elsevier Science Ltd. All rights reserved Keywords: glycosyltransferases; protein families; classification; modular *Corresponding author structure; genomic annotations The biosynthesis of complex carbohydrates and are involved in glycosyl transfer and thus conquer polysaccharides is of remarkable biological import- what Sharon has provocatively described as “the ance. -
Bacterial Exopolysaccharides: Biosynthesis Pathways and Engineering Strategies
REVIEW published: 26 May 2015 doi: 10.3389/fmicb.2015.00496 Bacterial exopolysaccharides: biosynthesis pathways and engineering strategies Jochen Schmid1*,VolkerSieber1 and Bernd Rehm2,3 1 Chair of Chemistry of Biogenic Resources, Technische Universität München, Straubing, Germany, 2 Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand, 3 The MacDiarmid Institute for Advanced Materials and Nanotechnology, Palmerston North, New Zealand Bacteria produce a wide range of exopolysaccharides which are synthesized via different biosynthesis pathways. The genes responsible for synthesis are often clustered within the genome of the respective production organism. A better understanding of the fundamental processes involved in exopolysaccharide biosynthesis and the regulation of these processes is critical toward genetic, metabolic and protein-engineering approaches to produce tailor-made polymers. These designer polymers will exhibit superior material properties targeting medical and industrial applications. Exploiting the Edited by: Weiwen Zhang, natural design space for production of a variety of biopolymer will open up a range of Tianjin University, China new applications. Here, we summarize the key aspects of microbial exopolysaccharide Reviewed by: biosynthesis and highlight the latest engineering approaches toward the production Jun-Jie Zhang, of tailor-made variants with the potential to be used as valuable renewable and Wuhan Institute of Virology, Chinese Academy of Sciences, China high-performance products -
Hyaluronan Synthases' Expression and Activity Are Induced by Fluid Shear Stress in Bone Marrow-Derived Mesenchymal Stem Cells
International Journal of Molecular Sciences Article Hyaluronan Synthases’ Expression and Activity Are Induced by Fluid Shear Stress in Bone Marrow-Derived Mesenchymal Stem Cells Sebastian Reiprich, Elif Akova , Attila Aszódi and Veronika Schönitzer * Experimental Surgery and Regenerative Medicine (ExperiMed), Department of General, Trauma and Reconstructive Surgery, Munich University Hospital, Ludwig-Maximilians-University, 80336 Munich, Germany; [email protected] (S.R.); [email protected] (E.A.); [email protected] (A.A.) * Correspondence: [email protected]; Tel.: +49-89-4400-53147 Abstract: During biomineralization, the cells generating the biominerals must be able to sense the external physical stimuli exerted by the growing mineralized tissue and change their intracellular protein composition according to these stimuli. In molluscan shell, the myosin-chitin synthases have been suggested to be the link for this communication between cells and the biomaterial. Hyaluronan synthases (HAS) belong to the same enzyme family as chitin synthases. Their product hyaluronan (HA) occurs in the bone and is supposed to have a regulatory function during bone regeneration. We hypothesize that HASes’ expression and activity are controlled by fluid-induced mechanotrans- duction as it is known for molluscan chitin synthases. In this study, bone marrow-derived human mesenchymal stem cells (hMSCs) were exposed to fluid shear stress of 10 Pa. The RNA transcriptome was analyzed by RNA sequencing (RNAseq). HA concentrations in the supernatants were measured Citation: Reiprich, S.; Akova, E.; by ELISA. The cellular structure of hMSCs and HAS2-overexpressing hMSCs was investigated after Aszódi, A.; Schönitzer, V. Hyaluronan treatment with shear stress using confocal microscopy. -
2008 Physical Biosciences Research Meeting Program and Abstracts O’Callaghan Annapolis Hotel, Annapolis, MD October 28-31, 2008
2008 Physical Biosciences Research Meeting Program and Abstracts O’Callaghan Annapolis Hotel, Annapolis, MD October 28-31, 2008 Chemical Sciences, Geosciences, and Biosciences Division Office of Basic Energy Sciences Office of Science U.S. Department of Energy 2008 Physical Biosciences Research Meeting DOE Contractors Meeting Program and Abstracts O’Callaghan Annapolis Hotel Annapolis, MD October 28-31, 2008 Chemical Sciences, Geosciences, and Biosciences Division Office of Basic Energy Sciences Office of Science U.S. Department of Energy i Cover art courtesy of Larry Rahn, Office of Basic Energy Sciences, Chemical Sciences, Geosciences, and Biosciences Division. This document was produced under contract number DE-AC05-06OR23100 between the U.S. Department of Energy and Oak Ridge Associated Universities. The research grants and contracts described in this document are supported by the U.S. DOE Office of Science, Office of Basic Energy Sciences, Chemical Sciences, Geosciences and Biosciences Division. ii Foreword This booklet provides a record for the inaugural meeting of the contractors (PIs) funded by the U.S. Department of Energy’s Physical Biosciences Program, which is part of the Chemical Sciences, Geosciences, and Biosciences Division of Basic Energy Sciences. Other PIs in the Biosciences program will meet next year in a similar forum, where the emphasis will be photosynthetic systems. Our objective in bringing you all together here in Annapolis is to provide an environment that: 1) Encourages free exchange of information regarding your DOE-funded research; 2) facilitates new collaborations between research groups having complementary strengths; 3) allows opportunities for discussions with DOE Program Managers and staff; 4) is conducive to sharing the latest techniques and clever adaptations of existing approaches to better address critical questions in energy bioscience research; and, 5) provides exposure to related fields and BES User Facilities through guest speakers. -
Involvement of Hyaluronan in the Adaptive Changes of the Rat Small
www.nature.com/scientificreports OPEN Involvement of hyaluronan in the adaptive changes of the rat small intestine neuromuscular function after ischemia/reperfusion injury Michela Bistoletti1,4, Annalisa Bosi1,4, Ilaria Caon1,4, Anna Maria Chiaravalli2, Paola Moretto1, Angelo Genoni1, Elisabetta Moro3, Evgenia Karousou1, Manuela Viola1, Francesca Crema3, Andreina Baj1, Alberto Passi1, Davide Vigetti1,5* & Cristina Giaroni1,5* Intestinal ischemia/reperfusion (I/R) injury has severe consequences on myenteric neurons, which can be irreversibly compromised resulting in slowing of transit and hindered food digestion. Myenteric neurons synthesize hyaluronan (HA) to form a well-structured perineuronal net, which undergoes derangement when myenteric ganglia homeostasis is perturbed, i.e. during infammation. In this study we evaluated HA involvement in rat small intestine myenteric plexus after in vivo I/R injury induced by clamping a branch of the superior mesenteric artery for 60 min, followed by 24 h of reperfusion. In some experiments, 4-methylumbelliferone (4-MU, 25 mg/kg), a HA synthesis inhibitor, was intraperitoneally administered to normal (CTR), sham-operated (SH) and I/R animals for 24 h. In longitudinal muscle myenteric plexus (LMMP) whole-mount preparations, HA binding protein staining as well as HA levels were signifcantly higher in the I/R group, and were reduced after 4-MU treatment. HA synthase 1 and 2 (HAS1 and HAS2) labelled myenteric neurons and mRNA levels in LMMPs increased in the I/R group with respect to CTR, and were reduced by 4-MU. The efciency of the gastrointestinal transit was signifcantly reduced in I/R and 4-MU-treated I/R groups with respect to CTR and SH groups. -
Developmental Evolution of Flowering Plant Pollen Tube Cell Walls: Callose Synthase (Cals) Gene Expression Patterns
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Faculty Publications and Other Works -- Ecology and Evolutionary Biology Ecology and Evolutionary Biology 7-1-2011 Developmental evolution of flowering plant pollen tube cell walls: callose synthase (CalS) gene expression patterns Jason M. Abercrombie University of Tennessee - Knoxville, [email protected] Brian C. O'Meara University of Tennessee - Knoxville, [email protected] Andrew R. Moffatt University of Tennessee - Knoxville, [email protected] Joseph H. Williams University of Tennessee - Knoxville, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_ecolpubs Part of the Ecology and Evolutionary Biology Commons Recommended Citation EvoDevo 2011, 2:14 doi:10.1186/2041-9139-2-14 This Article is brought to you for free and open access by the Ecology and Evolutionary Biology at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Faculty Publications and Other Works -- Ecology and Evolutionary Biology by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. Abercrombie et al. EvoDevo 2011, 2:14 http://www.evodevojournal.com/content/2/1/14 RESEARCH Open Access Developmental evolution of flowering plant pollen tube cell walls: callose synthase (CalS) gene expression patterns Jason M Abercrombie, Brian C O’Meara, Andrew R Moffatt and Joseph H Williams* Abstract Background: A number of innovations underlie the origin of rapid reproductive cycles in angiosperms. A critical early step involved the modification of an ancestrally short and slow-growing pollen tube for faster and longer distance transport of sperm to egg. -
Melatonin Enhances Chondrocytes Survival Through Hyaluronic Acid Production and Mitochondria Protection
Melatonin Enhances Chondrocytes Survival Through Hyaluronic Acid Production and Mitochondria Protection Type Research paper Keywords melatonin, mitochondrion, hyaluronic acid, NF-κB, chondrocyte Abstract Introduction Melatonin, an indoleamine synthesized mainly in the pineal gland, plays a key role in regulating the homeostasis of bone and cartilage. Reactive oxygen species (ROS) are released during osteoarthritis (OA) and associated with cartilage degradation. Melatonin is a potent scavenger of ROS. Material and methods We used rat chondrocytes as a research objective in our study and investigated the effect of melatonin. We evaluated cell viability by MTS, cell apoptosis and mitochondrial transmembrane potential (MMP) by flow cytometry, hyaluronic acid (HA) concentrations by ELISA assay, relative gene and protein expression by RT-qPCR and WB assay, the subcellular location of nuclear factor κB (NF-κB) p65 and Rh-123 dye by immunofluorescence, oxygen consumption rate (OCR) by Seahorse equipment. Results MTS and flow cytometry assay indicated that melatonin prevented H2O2-induced cell death. Melatonin suppressed the expression of HAS1 both from mRNA and protein level in time- and dose- dependent manners. Furthermore, melatonin treatment attenuated the decrease in HA production in response to H2O2 stimulation and repressed the expression of cyclooxygenase-2 (COX-2). Melatonin significantly decreasedPreprint the nuclear volume of p65 and inhibited the expression of p50 induced by H2O2. In addition, melatonin restored the MMP and OCR of -
Functional Investigation of Arabidopsis Callose Synthases and the Signal Transduction Pathway
FUNCTIONAL INVESTIGATION OF ARABIDOPSIS CALLOSE SYNTHASES AND THE SIGNAL TRANSDUCTION PATHWAY DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Xiaoyun Dong, M.S. (Plant Biology) The Ohio State University 2005 Dissertation Committee: Dr. Desh Pal S. Verma, Adviser Approved by Dr. Biao Ding _______________________________ Dr. Terry L. Graham Adviser Dr. Guo-liang Wang Graduate Program in Plant Pathology ABSTRACT Callose synthesis occurs at specific stages of cell wall development in all cell types, and in response to pathogen attack, wounding and physiological stresses. We isolated promoters of 12 Arabidopsis callose synthase (CalS1-12) genes and demonstrated that different callose synthases are expressed specifically in different tissues during plant development. That multiple CalS genes are expressed in the same cell type suggests the possibility that CalS complex may be constituted by heteromeric subunits. Five CalS genes were induced by pathogen (Peronospora parasitica, a causal agent of downy mildew) or salicylic acid (SA) treatments, while seven CalS genes were not affected by these treatments. Among the genes that are induced, CalS1 and CalS12, showed the highest responses. When expressed in npr1, a mutant impaired in the response of pathogen related (PR) genes to SA, the induction of CalS1 and CalS12 genes by the SA or pathogen treatments was significantly reduced. The patterns of expression of the other three CalS genes were not changed significantly in the npr1 mutant. These results suggest that the high induction observed of CalS1 and CalS12 is NPR1-dependent while the weak induction of all five CalS genes is NPR1-independent. -
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