bioRxiv preprint doi: https://doi.org/10.1101/2020.03.04.976407; this version posted March 5, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. A transcriptomic atlas of the mouse cerebellum reveals regional specializations and novel cell types Velina Kozareva 1* , Caroline Martin1 * , Tomas Osorno2 , Stephanie Rudolph 2, Chong Guo 2, Charles Vanderburg1 , Naeem Nadaf 1, Aviv Regev1 , Wade Regehr2 , Evan Macosko1 ,3# 1 B road Institute of Harvard and MIT, Stanley Center for Psychiatric Research, 450 Main St. Cambridge, MA, USA. 2 Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA. 3 M assachusetts General Hospital, Department of Psychiatry, 55 Fruit St. Boston, MA, USA. # Correspondence: e
[email protected] The cerebellum is a well-studied brain structure with diverse roles in motor learning, coordination, cognition, and autonomic regulation. Nonetheless, a complete inventory of cerebellar cell types is presently lacking. We used high-throughput transcriptional profiling to molecularly define cell types across individual lobules of the adult mouse cerebellum. Purkinje and granule neurons showed considerable regional specialization, with the greatest diversity occurring in the posterior lobules. For multiple types of cerebellar interneurons, the molecular variation within each type was more continuous, rather than discrete. For the unipolar brush cells (UBCs)— an interneuron population previously subdivided into two discrete populations— the continuous variation in gene expression was associated with a graded continuum of electrophysiological properties.