Structure and Function of Aggrecan
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Mechanistic Target of Rapamycin Regulates the Oligodendrocyte Cytoskeleton During Myelination
Research ReportDevelopment/Plasticity/Repair Mechanistic Target of Rapamycin Regulates the Oligodendrocyte Cytoskeleton during Myelination https://doi.org/10.1523/JNEUROSCI.1434-18.2020 Cite as: J. Neurosci 2020; 10.1523/JNEUROSCI.1434-18.2020 Received: 31 May 2018 Revised: 23 February 2020 Accepted: 26 February 2020 This Early Release article has been peer-reviewed and accepted, but has not been through the composition and copyediting processes. The final version may differ slightly in style or formatting and will contain links to any extended data. Alerts: Sign up at www.jneurosci.org/alerts to receive customized email alerts when the fully formatted version of this article is published. Copyright © 2020 Musah et al. 1 Mechanistic Target of Rapamycin Regulates the Oligodendrocyte Cytoskeleton during 2 Myelination 3 1Aminat S. Musah, 2Tanya L. Brown, 1Marisa A. Jeffries, 1Quan Shang, 2Hirokazu Hashimoto, 4 1Angelina V. Evangelou, 3Alison Kowalski, 3Mona Batish, 2Wendy B. Macklin and 1Teresa L. 5 Wood 6 1Department of Pharmacology, Physiology & Neuroscience, New Jersey Medical School, 7 Rutgers University, Newark, NJ U.S.A. 07101, 2Department of Cell and Developmental Biology, 8 University of Colorado School of Medicine, Aurora, CO, U.S.A. 80045, 3Department of Medical 9 and Molecular Sciences, University of Delaware, Newark, DE 19716 10 11 Abbreviated Title: mTOR Regulates the Oligodendrocyte Cytoskeleton 12 Corresponding Author: Teresa L. Wood, PhD, Department Pharmacology, Physiology & 13 Neuroscience, New Jersey Medical School Cancer Center H1200, Rutgers University, 205 S. 14 Orange Ave, Newark, NJ 07101-1709 15 [email protected] 16 Number of pages: 39 17 Number of Figures: 10 18 Number of Tables: 0 19 Number of Words: 20 Abstract: 242 21 Introduction: 687 22 Discussion: 1075 23 Conflict of Interest: The authors declare no competing financial interests. -
Distribution and Clinical Significance of Heparan Sulfate Proteoglycans in Ovarian Cancer
5178 Vol. 10, 5178–5186, August 1, 2004 Clinical Cancer Research Distribution and Clinical Significance of Heparan Sulfate Proteoglycans in Ovarian Cancer E. June Davies,1 Fiona H. Blackhall,1 decan-1 and glypican-1 were poor prognostic factors for Jonathan H. Shanks,2 Guido David,3 survival in univariate analysis. Alan T. McGown,4 Ric Swindell,5 Conclusion: We report for the first time distinct pat- 6 7 terns of expression of cell surface and extracellular matrix Richard J. Slade, Pierre Martin-Hirsch, heparan sulfate proteoglycans in normal ovary compared 1 1 John T. Gallagher, and Gordon C. Jayson with ovarian tumors. These data reinforce the role of the 1Cancer Research UK and University of Manchester Department of tumor stroma in ovarian adenocarcinoma and suggest that Medical Oncology, Paterson Institute for Cancer Research, stromal induction of syndecan-1 contributes to the patho- Manchester, England; 2Department of Histopathology, Christie Hospital NHS Trust, Manchester, England; 3Department of Medicine, genesis of this malignancy. University of Leuven, Leuven, Belgium.; 4Cancer Research UK Department of Experimental Pharmacology, Paterson Institute for Cancer Research, Manchester, England; 5Department of Medical INTRODUCTION Statistics, Christie Hospital NHS Trust, Manchester, England; The heparan sulfate proteoglycans (HSPGs) play diverse 6Department of Obstetrics and Gynaecology, Hope Hospital, Salford, Manchester, England; 7Department of Gynaecological Oncology, St. roles in tumor biology by mediating adhesion and migration -
Versican V2 Assembles the Extracellular Matrix Surrounding the Nodes of Ranvier in the CNS
The Journal of Neuroscience, June 17, 2009 • 29(24):7731–7742 • 7731 Cellular/Molecular Versican V2 Assembles the Extracellular Matrix Surrounding the Nodes of Ranvier in the CNS María T. Dours-Zimmermann,1 Konrad Maurer,2 Uwe Rauch,3 Wilhelm Stoffel,4 Reinhard Fa¨ssler,5 and Dieter R. Zimmermann1 Institutes of 1Surgical Pathology and 2Anesthesiology, University Hospital Zurich, CH-8091 Zurich, Switzerland, 3Vascular Wall Biology, Department of Experimental Medical Science, University of Lund, S-221 00 Lund, Sweden, 4Center for Biochemistry, Medical Faculty, University of Cologne, D-50931 Cologne, Germany, and 5Department of Molecular Medicine, Max Planck Institute of Biochemistry, D-82152 Martinsried, Germany The CNS-restricted versican splice-variant V2 is a large chondroitin sulfate proteoglycan incorporated in the extracellular matrix sur- rounding myelinated fibers and particularly accumulating at nodes of Ranvier. In vitro, it is a potent inhibitor of axonal growth and therefore considered to participate in the reduction of structural plasticity connected to myelination. To study the role of versican V2 during postnatal development, we designed a novel isoform-specific gene inactivation approach circumventing early embryonic lethality of the complete knock-out and preventing compensation by the remaining versican splice variants. These mice are viable and fertile; however, they display major molecular alterations at the nodes of Ranvier. While the clustering of nodal sodium channels and paranodal structures appear in versican V2-deficient mice unaffected, the formation of the extracellular matrix surrounding the nodes is largely impaired. The conjoint loss of tenascin-R and phosphacan from the perinodal matrix provide strong evidence that versican V2, possibly controlled by a nodal receptor, organizes the extracellular matrix assembly in vivo. -
Orthopaedic Bioengineering Research Laboratory 2010-2011
2010-2011 Report including the Orthopaedic Bioengineering Research Laboratory Preface It is my pleasure to present our 2010-2011 report been possible without a number of our donors from the Orthopaedic Research Center and the stepping up to provide supplemental funding. Orthopaedic Bioengineering Research Laboratory I’m particularly grateful to Mr. Jim Kennedy for at Colorado State University. Our principal focus providing supplemental operating funds and continues to be solving the significant problems in continuing the legacy of his mother, Barbara Cox equine musculoskeletal disease as can be seen in this Anthony. I’m also grateful to Abigail Kawananakoa report but we also continue to investigate questions for continued support over and above the Endowed relevant to human joint disease and techniques Chair she donated three years ago; and Herbert Allen and devices for human osteoarthritis and articular for continuing to provide considerable support for cartilage repair when the technique can also benefit investigation of cutting edge therapies. the horse. There have been a number of notable projects in this regard. The studies, led by Dr. Dave We have added an Equine Sports Medicine Frisbie at the ORC in partnership with Dr. Alan Ambulatory clinical arm to the Orthopaedic Research Grodzinsky at MIT on an NIH Program Grant in Center and also initiated two residencies in Sports cartilage repair, have been completed and results Medicine and Rehabilitation. This follows on from are still be analyzed. We have three other ongoing the accreditation of a new specialty college, the NIH grants in partnership with collaborators. One is American College of Veterinary Sports Medicine and with Dr. -
And MMP-Mediated Cell–Matrix Interactions in the Tumor Microenvironment
International Journal of Molecular Sciences Review Hold on or Cut? Integrin- and MMP-Mediated Cell–Matrix Interactions in the Tumor Microenvironment Stephan Niland and Johannes A. Eble * Institute of Physiological Chemistry and Pathobiochemistry, University of Münster, 48149 Münster, Germany; [email protected] * Correspondence: [email protected] Abstract: The tumor microenvironment (TME) has become the focus of interest in cancer research and treatment. It includes the extracellular matrix (ECM) and ECM-modifying enzymes that are secreted by cancer and neighboring cells. The ECM serves both to anchor the tumor cells embedded in it and as a means of communication between the various cellular and non-cellular components of the TME. The cells of the TME modify their surrounding cancer-characteristic ECM. This in turn provides feedback to them via cellular receptors, thereby regulating, together with cytokines and exosomes, differentiation processes as well as tumor progression and spread. Matrix remodeling is accomplished by altering the repertoire of ECM components and by biophysical changes in stiffness and tension caused by ECM-crosslinking and ECM-degrading enzymes, in particular matrix metalloproteinases (MMPs). These can degrade ECM barriers or, by partial proteolysis, release soluble ECM fragments called matrikines, which influence cells inside and outside the TME. This review examines the changes in the ECM of the TME and the interaction between cells and the ECM, with a particular focus on MMPs. Keywords: tumor microenvironment; extracellular matrix; integrins; matrix metalloproteinases; matrikines Citation: Niland, S.; Eble, J.A. Hold on or Cut? Integrin- and MMP-Mediated Cell–Matrix 1. Introduction Interactions in the Tumor Microenvironment. -
Table 2. Significant
Table 2. Significant (Q < 0.05 and |d | > 0.5) transcripts from the meta-analysis Gene Chr Mb Gene Name Affy ProbeSet cDNA_IDs d HAP/LAP d HAP/LAP d d IS Average d Ztest P values Q-value Symbol ID (study #5) 1 2 STS B2m 2 122 beta-2 microglobulin 1452428_a_at AI848245 1.75334941 4 3.2 4 3.2316485 1.07398E-09 5.69E-08 Man2b1 8 84.4 mannosidase 2, alpha B1 1416340_a_at H4049B01 3.75722111 3.87309653 2.1 1.6 2.84852656 5.32443E-07 1.58E-05 1110032A03Rik 9 50.9 RIKEN cDNA 1110032A03 gene 1417211_a_at H4035E05 4 1.66015788 4 1.7 2.82772795 2.94266E-05 0.000527 NA 9 48.5 --- 1456111_at 3.43701477 1.85785922 4 2 2.8237185 9.97969E-08 3.48E-06 Scn4b 9 45.3 Sodium channel, type IV, beta 1434008_at AI844796 3.79536664 1.63774235 3.3 2.3 2.75319499 1.48057E-08 6.21E-07 polypeptide Gadd45gip1 8 84.1 RIKEN cDNA 2310040G17 gene 1417619_at 4 3.38875643 1.4 2 2.69163229 8.84279E-06 0.0001904 BC056474 15 12.1 Mus musculus cDNA clone 1424117_at H3030A06 3.95752801 2.42838452 1.9 2.2 2.62132809 1.3344E-08 5.66E-07 MGC:67360 IMAGE:6823629, complete cds NA 4 153 guanine nucleotide binding protein, 1454696_at -3.46081884 -4 -1.3 -1.6 -2.6026947 8.58458E-05 0.0012617 beta 1 Gnb1 4 153 guanine nucleotide binding protein, 1417432_a_at H3094D02 -3.13334396 -4 -1.6 -1.7 -2.5946297 1.04542E-05 0.0002202 beta 1 Gadd45gip1 8 84.1 RAD23a homolog (S. -
Glycosaminoglycan Therapy for Long-Term Diabetic Complications?
Diabetologia (1998) 41: 975±979 Ó Springer-Verlag 1998 For debate Glycosaminoglycan therapy for long-term diabetic complications? G.Gambaro1, J.Skrha2, A. Ceriello3 1 Institute of Internal Medicine, Division of Nephrology, University of Padua, Italy 2 3rd Department of Internal Medicine, Charles University, Prague, Czech Republic 3 Department of Internal Medicine, University of Udine, Italy Long-term complications are the most important and an aminosugar (glucosamine or galattosamine) cause of mortality of diabetic patiens in western [5]. These molecules are widely distributed in the countries and diabetic nephropathy has emerged as body and prominent in extracellular matrices [5]. a major determinant of end-stage renal failure [1]. Three major classes of GAGs have been de- Moreover, patients with diabetes mellitus have a scribed: a predominant large chondroitin sulphate, a high probability of developing acute cardiovascular small dermatan sulphate and a polydisperse heparan disease, in particular myocardial infarction and cere- sulphate (HS) [5]. GAGs are vital in maintaining the brovascular stroke which are the cause of death in structural integrity of the tissue and studies have nearly 80% of this population [2]. Although data shown that basement membranes contain HS in the from the Diabetes Control and Complications Trial form of a proteoglycan unique to that tissue [5]. HS establish that hyperglycaemia has a central role in di- forms anionic sites in this matrix and are thought to abetic complications, strict metabolic control can be restrict the passage of proteins through the basement difficult to achieve. The search for new and ancillary membrane [5]. approaches to diabetic complications is therefore warranted and understanding the distal pathway of glucose toxicity assumes clinical and therapeutical GAG metabolism and diabetes mellitus significance. -
Sialylated Keratan Sulfate Chains Are Ligands for Siglec-8 in Human Airways
Sialylated Keratan Sulfate Chains are Ligands for Siglec-8 in Human Airways by Ryan Porell A dissertation submitted to Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland September 2018 © 2018 Ryan Porell All Rights Reserved ABSTRACT Airway inflammatory diseases are characterized by infiltration of immune cells, which are tightly regulated to limit inflammatory damage. Most members of the Siglec family of sialoglycan binding proteins are expressed on the surfaces of immune cells and are immune inhibitory when they bind their sialoglycan ligands. When Siglec-8 on activated eosinophils and mast cells binds to its sialoglycan ligands, apoptosis or inhibition of mediator release is induced. We identified human airway Siglec-8 ligands as sialylated and 6’-sulfated keratan sulfate (KS) chains carried on large proteoglycans. Siglec-8- binding proteoglycans from human airways increase eosinophil apoptosis in vitro. Given the structural complexity of intact proteoglycans, target KS chains were isolated from airway tissue and lavage. Biological samples were extensively proteolyzed, the remaining sulfated glycan chains captured and resolved by anion exchange chromatography, methanol-precipitated then chondroitin and heparan sulfates enzymatically hydrolyzed. The resulting preparation consisted of KS chains attached to a single amino acid or a short peptide. Purified KS chains were hydrolyzed with either hydrochloric acid or trifluoroacetic acid to release acidic and neutral sugars, respectively, followed by DIONEX carbohydrate analysis. To isolate Siglec-8-binding KS chains, purified KS chains from biological samples were biotinylated at the amino acid, resolved by affinity and/or size- exclusion chromatography, the resulting fractions immobilized on streptavidin microwell plates, and probed for binding of Siglec-8-Fc. -
Three Is a Crowd
TREPAR 1600 No. of Pages 12 Review Three Rosetting[403_TD$IF] in Plasmodium falciparum Xue Yan Yam,1,3 Makhtar Niang,2,3 Kripa Gopal Madnani,1,3 and Peter R. Preiser1,* The intracellular malaria parasites extensively modify host erythrocytes to allow Trends nutrient uptake, ensure homeostasis, and evade the host’s immune response. Rosetting, the binding of uninfected To achieve this, the parasite exports several proteins to the erythrocyte surface. RBCs to a parasite-infected RBC In Plasmodium falciparum, the parasite responsible for the most severe form of (iRBC), has been directly linked to human malaria, three major variant surface antigen families – PfEMP1, STE- the severity of clinical disease. VOR, and RIFIN – have been implicated in contributing to immune evasion, Three parasite protein families, parasite sequestration, and parasite-mediated rosetting of uninfected eryth- PfEMP1, STEVOR, and RIFIN, mediate rosetting in Plasmodium falciparum. rocytes. Sequestration and rosetting have been linked to parasite-mediated pathology, making the variant surface antigens of P. falciparum major virulence Sequential timing of surface expres- factors. Here we review our current understanding of rosetting mechanism, sion of PfEMP1, RIFIN, and STEVOR fi on iRBC suggests that the parasite has recent ndings of STEVOR, RIFIN-mediated rosetting, and their implication on developed three different rosette for- the severity and pathology of the disease. mation mechanisms, implicating a cri- tical function for parasite survival. Plasmodium Variant Surface Antigens of Parasites: A Role in Rosetting PfEMP1 mediates rosetting through Plasmodium parasites have a complex life cycle involving a mosquito vector and a mammalian CR1, heparan sulfate, and blood group host. -
TACI:Fc Scavenging B Cell Activating Factor (BAFF) Alleviates Ovalbumin-Induced Bronchial Asthma in Mice
EXPERIMENTAL and MOLECULAR MEDICINE, Vol. 39, No. 3, 343-352, June 2007 TACI:Fc scavenging B cell activating factor (BAFF) alleviates ovalbumin-induced bronchial asthma in mice 1,2,3 2 Eun-Yi Moon and Sook-Kyung Ryu the percentage of non-lymphoid cells and no changes were detected in lymphoid cell population. 1 Department of Bioscience and Biotechnology Hypodiploid cell formation in BALF was decreased Sejong University by OVA-challenge but it was recovered by TACI:Fc Seoul 143-747, Korea treatment. Collectively, data suggest that asthmatic 2 Laboratory of Human Genomics symptom could be alleviated by scavenging BAFF Korea Research Institute of Bioscience and Biotechnology (KRIBB) and then BAFF could be a novel target for the Daejeon 305-806, Korea develpoment of anti-asthmatic agents. 3 Corresponding author: Tel, 82-2-3408-3768; Fax, 82-2-466-8768; E-mail, [email protected] Keywords: asthma; B-cell activating factor; ovalbu- and [email protected] min; transmembrane activator and CAML interactor protein Accepted 28 March 2007 Introduction Abbreviations: BAFF, B cell activating factor belonging to TNF- family; BALF, bronchoalveolar lavage fluid; OVA, ovalbumin; PAS, Mature B cell generation and maintenance are regu- periodic acid-Schiff; Prx, peroxiredoxin; TACI, transmembrane lated by B-cell activating factor (BAFF). BAFF is pro- activator and calcium modulator and cyclophilin ligand interactor duced by macrophages or dendritic cells upon stim- ulation with LPS or IFN- . BAFF belongs to the TNF family. Its biological role is mediated by the specific Abstract receptors, B-cell maturation antigen (BCMA), trans- membrane activator and calcium modulator and cy- Asthma was induced by the sensitization and chal- clophilin ligand interactor (TACI) and BAFF receptor, lenge with ovalbumin (OVA) in mice. -
Matrix Protection Therapy in Diabetic Foot Ulcers: Pilot Study of CACIPLIQ20®
Review INES SLIM (MD)1, HOUDA TAJOURI (MD)1, DENIS BARRITAULT (PHD)2,3, MAHA KACEM NJAH (MD)1, KOUSSAY ACH (MD)1, MOLKA CHADLI CHAIEB MD1, LARBI CHAIEB (MD)1 1. Endocrinology and Diabetology Department, Farhat Hached University Hospital, Ibn Jazzar Street, 4000, Sousse, Tunisia. 2. OTR3, 4 Rue Française, 75001 Paris, France. 3. Laboratoire CRRET , CNRS UMR 7149 Sciences Faculty, Paris Est Créteil University, 94000 Créteil, France. Matrix Protection Therapy in Diabetic Foot Ulcers: Pilot Study of CACIPLIQ20® Abstract We evaluated whether matrix protection therapy by CACIPLIQ20® promotes healing of chronic lower extremity wounds in diabetic patients. Ten diabetic patients with non-infected chronic skin wounds and with no evidence of healing were inclu- ded. CACIPLIQ20® was applied topically twice a week for 5 minutes for up to 10 weeks. Wound surface area was measured at baseline then weekly during treatment. Wound closure, defined as complete reepithelialization, was the primary end- point. Mean wound surface area decreased by 25% within the first week (p=0.021 vs. baseline) and by 47% after 4 weeks (p=0.001 vs. baseline). After 10 weeks, the wound was closed in 6 of the 10 patients and decreased over 80% in the other patients. Subsequently, the none healed patients returned to standard care. Six months later, complete wound healing was noted in one additional patient and no further change in the remaining 3 patients. Two patients were again treated with CACI- PLIQ20® for one month: one healed, the other improved again by 50%. Nine months later, closed ulcers did not re-open. -
Supplementary Table 1: Adhesion Genes Data Set
Supplementary Table 1: Adhesion genes data set PROBE Entrez Gene ID Celera Gene ID Gene_Symbol Gene_Name 160832 1 hCG201364.3 A1BG alpha-1-B glycoprotein 223658 1 hCG201364.3 A1BG alpha-1-B glycoprotein 212988 102 hCG40040.3 ADAM10 ADAM metallopeptidase domain 10 133411 4185 hCG28232.2 ADAM11 ADAM metallopeptidase domain 11 110695 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 195222 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 165344 8751 hCG20021.3 ADAM15 ADAM metallopeptidase domain 15 (metargidin) 189065 6868 null ADAM17 ADAM metallopeptidase domain 17 (tumor necrosis factor, alpha, converting enzyme) 108119 8728 hCG15398.4 ADAM19 ADAM metallopeptidase domain 19 (meltrin beta) 117763 8748 hCG20675.3 ADAM20 ADAM metallopeptidase domain 20 126448 8747 hCG1785634.2 ADAM21 ADAM metallopeptidase domain 21 208981 8747 hCG1785634.2|hCG2042897 ADAM21 ADAM metallopeptidase domain 21 180903 53616 hCG17212.4 ADAM22 ADAM metallopeptidase domain 22 177272 8745 hCG1811623.1 ADAM23 ADAM metallopeptidase domain 23 102384 10863 hCG1818505.1 ADAM28 ADAM metallopeptidase domain 28 119968 11086 hCG1786734.2 ADAM29 ADAM metallopeptidase domain 29 205542 11085 hCG1997196.1 ADAM30 ADAM metallopeptidase domain 30 148417 80332 hCG39255.4 ADAM33 ADAM metallopeptidase domain 33 140492 8756 hCG1789002.2 ADAM7 ADAM metallopeptidase domain 7 122603 101 hCG1816947.1 ADAM8 ADAM metallopeptidase domain 8 183965 8754 hCG1996391 ADAM9 ADAM metallopeptidase domain 9 (meltrin gamma) 129974 27299 hCG15447.3 ADAMDEC1 ADAM-like,