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First Molecular Data and Morphological Re-Description of Two
Journal of King Saud University – Science 33 (2021) 101290 Contents lists available at ScienceDirect Journal of King Saud University – Science journal homepage: www.sciencedirect.com Original article First molecular data and morphological re-description of two copepod species, Hatschekia sargi and Hatschekia leptoscari, as parasites on Parupeneus rubescens in the Arabian Gulf ⇑ Saleh Al-Quraishy a, , Mohamed A. Dkhil a,b, Nawal Al-Hoshani a, Wejdan Alhafidh a, Rewaida Abdel-Gaber a,c a Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia b Department of Zoology and Entomology, Faculty of Science, Helwan University, Cairo, Egypt c Zoology Department, Faculty of Science, Cairo University, Cairo, Egypt article info abstract Article history: Little information is available about the biodiversity of parasitic copepods in the Arabian Gulf. The pre- Received 6 September 2020 sent study aimed to provide new information about different parasitic copepods gathered from Revised 30 November 2020 Parupeneus rubescens caught in the Arabian Gulf (Saudi Arabia). Copepods collected from the infected fish Accepted 9 December 2020 were studied using light microscopy and scanning electron microscopy and then examined using stan- dard staining and measuring techniques. Phylogenetic analyses were conducted based on the partial 28S rRNA gene sequences from other copepod species retrieved from GenBank. Two copepod species, Keywords: Hatschekia sargi Brian, 1902 and Hatschekia leptoscari Yamaguti, 1939, were identified as naturally 28S rRNA gene infected the gills of fish. Here we present a phylogenetic analysis of the recovered copepod species to con- Arabian Gulf Hatschekiidae firm their taxonomic position in the Hatschekiidae family within Siphonostomatoida and suggest the Marine fish monophyletic origin this family. -
Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
A Systematic and Experimental Analysis of Their Genes, Genomes, Mrnas and Proteins; and Perspective to Next Generation Sequencing
Crustaceana 92 (10) 1169-1205 CRUSTACEAN VITELLOGENIN: A SYSTEMATIC AND EXPERIMENTAL ANALYSIS OF THEIR GENES, GENOMES, MRNAS AND PROTEINS; AND PERSPECTIVE TO NEXT GENERATION SEQUENCING BY STEPHANIE JIMENEZ-GUTIERREZ1), CRISTIAN E. CADENA-CABALLERO2), CARLOS BARRIOS-HERNANDEZ3), RAUL PEREZ-GONZALEZ1), FRANCISCO MARTINEZ-PEREZ2,3) and LAURA R. JIMENEZ-GUTIERREZ1,5) 1) Sea Science Faculty, Sinaloa Autonomous University, Mazatlan, Sinaloa, 82000, Mexico 2) Coelomate Genomic Laboratory, Microbiology and Genetics Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 3) Advanced Computing and a Large Scale Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 4) Catedra-CONACYT, National Council for Science and Technology, CDMX, 03940, Mexico ABSTRACT Crustacean vitellogenesis is a process that involves Vitellin, produced via endoproteolysis of its precursor, which is designated as Vitellogenin (Vtg). The Vtg gene, mRNA and protein regulation involve several environmental factors and physiological processes, including gonadal maturation and moult stages, among others. Once the Vtg gene, mRNAs and protein are obtained, it is possible to establish the relationship between the elements that participate in their regulation, which could either be species-specific, or tissue-specific. This work is a systematic analysis that compares the similarities and differences of Vtg genes, mRNA and Vtg between the crustacean species reported in databases with respect to that obtained from the transcriptome of Callinectes arcuatus, C. toxotes, Penaeus stylirostris and P. vannamei obtained with MiSeq sequencing technology from Illumina. Those analyses confirm that the Vtg obtained from selected species will serve to understand the process of vitellogenesis in crustaceans that is important for fisheries and aquaculture. RESUMEN La vitelogénesis de los crustáceos es un proceso que involucra la vitelina, producida a través de la endoproteólisis de su precursor llamado Vitelogenina (Vtg). -
Balanus Glandula Class: Multicrustacea, Hexanauplia, Thecostraca, Cirripedia
Phylum: Arthropoda, Crustacea Balanus glandula Class: Multicrustacea, Hexanauplia, Thecostraca, Cirripedia Order: Thoracica, Sessilia, Balanomorpha Acorn barnacle Family: Balanoidea, Balanidae, Balaninae Description (the plate overlapping plate edges) and radii Size: Up to 3 cm in diameter, but usually (the plate edge marked off from the parietes less than 1.5 cm (Ricketts and Calvin 1971; by a definite change in direction of growth Kozloff 1993). lines) (Fig. 3b) (Newman 2007). The plates Color: Shell usually white, often irregular themselves include the carina, the carinola- and color varies with state of erosion. Cirri teral plates and the compound rostrum (Fig. are black and white (see Plate 11, Kozloff 3). 1993). Opercular Valves: Valves consist of General Morphology: Members of the Cirri- two pairs of movable plates inside the wall, pedia, or barnacles, can be recognized by which close the aperture: the tergum and the their feathery thoracic limbs (called cirri) that scutum (Figs. 3a, 4, 5). are used for feeding. There are six pairs of Scuta: The scuta have pits on cirri in B. glandula (Fig. 1). Sessile barna- either side of a short adductor ridge (Fig. 5), cles are surrounded by a shell that is com- fine growth ridges, and a prominent articular posed of a flat basis attached to the sub- ridge. stratum, a wall formed by several articulated Terga: The terga are the upper, plates (six in Balanus species, Fig. 3) and smaller plate pair and each tergum has a movable opercular valves including terga short spur at its base (Fig. 4), deep crests for and scuta (Newman 2007) (Figs. -
ABSTRACT HONEYCUTT, JAMIE LYNN. (Née
ABSTRACT HONEYCUTT, JAMIE LYNN. (née MANKIEWICZ) Environmental and Endocrine Regulators of Stress Effects in Teleost Fishes (Under the direction of Dr. Russell J. Borski). The adaptive stress response is mediated by the endocrine stress axis whereby catecholamines and glucocorticoids promote production of energy substrates essential for re-establishing homeostasis. Here we utilize two teleost fish models to examine two overarching research goals: 1) the role catecholamines, cortisol, and glucose might play in regulating leptin (LepA), an important hormone controlling energy homeostasis in the Mozambique tilapia (Oreochromis mossambicus), and 2) the impact of environmental stressors, namely temperature, on nursery habitat sex ratios and sex determination in southern flounder (Paralichthys lethostigma), a species that exhibits both genetic and environmental sex determination. Leptin is a cytokine critical for regulating energy expenditure in vertebrates, yet it is unclear how the hormone interacts with the endocrine stress axis, particularly in fishes. We evaluated the actions of epinephrine, cortisol, and glucose in regulating leptin in the liver, the primary site of hormone production in the tilapia. Both cortisol and epinephrine stimulate LepA secretion from hepatocytes. While epinephrine had no effect on mRNA, cortisol suppresses lepa mRNA levels. Epinephrine stimulates both leptin synthesis and secretion in vivo. Leptin is directly sensitive to glucose as hepatic synthesis and secretion declines as ambient glucose levels rise. By contrast, glucose injection increases lepa mRNA levels by 14-fold, indicating that there are likely other systemic factors regulated by glucose that may enhance lepa mRNA. These data show that tilapia LepA is negatively regulated by rises in extracellular glucose at the level of the hepatocyte but stimulated by hyperglycemia in vivo. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
Comparative Parasitology
January 2000 Number 1 Comparative Parasitology Formerly the Journal of the Helminthological Society of Washington A semiannual journal of research devoted to Helminthology and all branches of Parasitology BROOKS, D. R., AND"£. P. HOBERG. Triage for the Biosphere: Hie Need and Rationale for Taxonomic Inventories and Phylogenetic Studies of Parasites/ MARCOGLIESE, D. J., J. RODRIGUE, M. OUELLET, AND L. CHAMPOUX. Natural Occurrence of Diplostomum sp. (Digenea: Diplostomatidae) in Adult Mudpiippies- and Bullfrog Tadpoles from the St. Lawrence River, Quebec __ COADY, N. R., AND B. B. NICKOL. Assessment of Parenteral P/agior/iync^us cylindraceus •> (Acatithocephala) Infections in Shrews „ . ___. 32 AMIN, O. M., R. A. HECKMANN, V H. NGUYEN, V L. PHAM, AND N. D. PHAM. Revision of the Genus Pallisedtis (Acanthocephala: Quadrigyridae) with the Erection of Three New Subgenera, the Description of Pallisentis (Brevitritospinus) ^vietnamensis subgen. et sp. n., a Key to Species of Pallisentis, and the Description of ,a'New QuadrigyridGenus,Pararaosentis gen. n. , ..... , '. _. ... ,- 40- SMALES, L. R.^ Two New Species of Popovastrongylns Mawson, 1977 (Nematoda: Gloacinidae) from Macropodid Marsupials in Australia ."_ ^.1 . 51 BURSEY, C.,R., AND S. R. GOLDBERG. Angiostoma onychodactyla sp. n. (Nematoda: Angiostomatidae) and'Other Intestinal Hehninths of the Japanese Clawed Salamander,^ Onychodactylns japonicus (Caudata: Hynobiidae), from Japan „„ „..„. 60 DURETTE-DESSET, M-CL., AND A. SANTOS HI. Carolinensis tuffi sp. n. (Nematoda: Tricho- strongyUna: Heligmosomoidea) from the White-Ankled Mouse, Peromyscuspectaralis Osgood (Rodentia:1 Cricetidae) from Texas, U.S.A. 66 AMIN, O. M., W. S. EIDELMAN, W. DOMKE, J. BAILEY, AND G. PFEIFER. An Unusual ^ Case of Anisakiasis in California, U.S.A. -
Mécanismes D'infection De L'ectoparasite De Poissons D'eau Douce Tracheliastes Polycolpus
Mécanismes d’infection de l’ectoparasite de poissons d’eau douce Tracheliastes polycolpus Eglantine Mathieu-Begne To cite this version: Eglantine Mathieu-Begne. Mécanismes d’infection de l’ectoparasite de poissons d’eau douce Trache- liastes polycolpus. Biologie animale. Université Paul Sabatier - Toulouse III, 2020. Français. NNT : 2020TOU30008. tel-02972144 HAL Id: tel-02972144 https://tel.archives-ouvertes.fr/tel-02972144 Submitted on 20 Oct 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE En vue de l’obtention du DOCTORAT DE L’UNIVERSITÉ DE TOULOUSE Délivré par l'Université Toulouse 3 - Paul Sabatier Présentée et soutenue par Eglantine MATHIEU-BEGNE Le 20 janvier 2020 Mécanismes d'infection de l'ectoparasite de poissons d'eau douce Tracheliastes polycolpus Ecole doctorale : SEVAB - Sciences Ecologiques, Vétérinaires, Agronomiques et Bioingenieries Spécialité : Ecologie, biodiversité et évolution Unité de recherche : EDB - Evolution et Diversité Biologique Thèse dirigée par Géraldine LOOT et Olivier REY Jury Mme Nathalie CHARBONNEL, Rapporteure Mme Nadia AUBIN-HORTH, Rapporteure M. Thierry RIGAUD, Examinateur M. Guillaume MITTA, Examinateur M. Philipp HEEB, Examinateur Mme Géraldine LOOT, Directrice de thèse M. Olivier REY, Co-directeur de thèse Résumé L’identification des mécanismes à l’origine des interactions entre espèces est essentielle afin de mieux appréhender les conséquences des changements globaux sur la biodiversité et le fonctionnement des écosystèmes. -
Movement Patterns of Chilean Flounder (Paralichthys Adspersus) Inside Tongoy Bay (Central Northern Chile): Observations Using Passive Acoustic Telemetry
Vol. 8(12), pp. 126-139, December 2016 DOI: 10.5897/IJFA2016.0546 Article Number: E2D42DD61769 International Journal of Fisheries and ISSN 2006-9839 Copyright ©2016 Aquaculture Author(s) retain the copyright of this article http://www.academicjournals.org/IJFA Full Length Research Paper Movement patterns of Chilean flounder (Paralichthys adspersus) inside Tongoy Bay (central northern Chile): Observations using passive acoustic telemetry Pablo M. Rojas División de Investigación en Acuicultura, Instituto de Fomento Pesquero P. O. Box 665, Puerto Montt, Chile. Received 22 February, 2016; Accepted 1 September, 2016 The movement patterns of juvenile and adult Chilean flounder (P. adpersus) were investigated inside Tongoy Bay using ultrasound signal acoustic receivers from June 2012 to March, 2013. Flounder landings in Tongoy Bay and Puerto Aldea from December 2011 to March 2013 were examined. Multiple regression analysis indicated that the Catch per Unit of Effort of Chilean flounder was significantly and negatively related to temperature and depth. Analyses of site- and time-specific length-frequency distributions indicated movement of Chilean flounder on the time scale of weeks, which was likely due to emigration of fish >30 cm in total length. A mark-recapture study was performed. Visible elastomer paint was used to tag 7,510 Chilean flounder. A total of 12 Chilean flounder individuals of different lengths were tagged with an ultrasound transmission device to monitor their movement inside Tongoy Bay. Adults flounder showed increased activity inside Tongoy Bay during the study period, likely due of the differences in length among the released individuals. Although differences were detected in the area occupied by juvenile and adult flounders in Tongoy Bay, it was also noticed that the smaller sized individuals exhibited changes in behavior after implanting the transmitters that resulted in impaired capacity to move freely. -
Helminthes of Goby Fish of the Hryhoryivsky Estuary (Black Sea, Ukraine)
Vestnik zoologii, 36(3): 71—76, 2002 © Yu. Kvach, 2002 UDC 597.585.1 : 616.99(262.55) HELMINTHES OF GOBY FISH OF THE HRYHORYIVSKY ESTUARY (BLACK SEA, UKRAINE) Yu. Kvach Department of Zoology, Odessa University, Shampansky prov., 2, Odessa, 65058 Ukraine E-mail: [email protected] Accepted 4 September 2001 Helminthes of Goby Fish of the Hryhoryivsky Estuary (Black Sea, Ukraine). Kvach Yu. – In the paper the data about the helminthofauna of Neogobius melanostomus, N. ratan, N. fluviatilis, Mesogobius batrachocephalus, Zosterisessor ophiocephalus, and Proterorhynus marmoratus in the Hryhoryivsky Estu- ary are presented. The fauna of gobies’ helmint hes consist of 10 species: 5 trematods (Cryptocotyle concavum met., C. lingua met., Pygidiopsis genata met., Acanthostomum imbutiforme met.), Asymphylo- dora pontica, one cestoda (Proteocephalus gobiorum), 2 nematods (Streptocara crassicauda l., Dichelyne minutus), and 2 acanthocephalans (Acanthocephaloides propinquus, Telosentis exiguus). Only one of trematods species was presented by adult stage. The modern fauna of helminthes and published data are compared. The relative stability of the goby fish helminthofauna of the Estuary is mentioned. Key words: goby, helminth, infection, Hryhoryivsky Estuary. Ãåëüìèíòû áû÷êîâûõ ðûá Ãðèãîðüåâñêîãî ëèìàíà (×åðíîå ìîðå, Óêðàèíà). Êâà÷ Þ. – Èññëåäî- âàíà ãåëüìèíòîôàóíà Neogobius melanostomus, N. ratan, N. fluviatilis, Mesogobius batrachocephalus, Zosterisessor ophiocephalus è Proterorhynus marmoratus èç Ãðèãîðüåâñêîãî ëèìàíà. Ôàóíà ãåëüìèí- òîâ áû÷êîâ âêëþ÷àåò 10 âèäîâ. Èç íèõ 5 âèäîâ òðåìàòîä (Cryptocotyle lingua met., C. concavum met., Pygidiopsis genata met., Acanthostomum imbutiforme met., Asymphylodora pontica), îäèí âèä öåñ- òîä (Proteocephalus gobiorum), 2 âèäà íåìàòîä (Streptocara crassicauda l., Dichelyne minutus), 2 âèäà ñêðåáíåé (Acanthocephaloides propinquus, Telosentis exiguus). Èç ïÿòè âèäîâ òðåìàòîä òîëüêî îäèí ïðåäñòàâëåí âçðîñëîé ñòàäèåé. -
An Evolutionary Perspective of Dopachrome Tautomerase Enzymes in Metazoans
Article An Evolutionary Perspective of Dopachrome Tautomerase Enzymes in Metazoans Umberto Rosani 1,2,*, Stefania Domeneghetti 1, Lorenzo Maso 1, K. Mathias Wegner 2 and Paola Venier 1,* 1 Department of Biology, University of Padova, Padova, 35121, Italy; [email protected] (S.D.); [email protected] (L.M.) 2 Alfred Wegener Institute (AWI)—Helmholtz Centre for Polar and Marine Research, Wadden Sea Station Sylt, List auf Sylt25992, Germany; [email protected] * Correspondence: [email protected] (U.R.); [email protected] (P.V.) Received: 16 May 2019; Accepted: 24 June 2019; Published: 28 June 2019 Abstract: Melanin plays a pivotal role in the cellular processes of several metazoans. The final step of the enzymically-regulated melanin biogenesis is the conversion of dopachrome into dihydroxyindoles, a reaction catalyzed by a class of enzymes called dopachrome tautomerases. We traced dopachrome tautomerase (DCT) and dopachrome converting enzyme (DCE) genes throughout metazoans and we could show that only one class is present in most of the phyla. While DCTs are typically found in deuterostomes, DCEs are present in several protostome phyla, including arthropods and mollusks. The respective DCEs belong to the yellow gene family, previously reported to be taxonomically restricted to insects, bacteria and fungi. Mining genomic and transcriptomic data of metazoans, we updated the distribution of DCE/yellow genes, demonstrating their presence and active expression in most of the lophotrochozoan phyla as well as in copepods (Crustacea). We have traced one intronless DCE/yellow gene through most of the analyzed lophotrochozoan genomes and we could show that it was subjected to genomic diversification in some species, while it is conserved in other species. -
Parasitic Copepods (Crustacea, Hexanauplia) on Fishes from the Lagoon Flats of Palmyra Atoll, Central Pacific
A peer-reviewed open-access journal ZooKeys 833: 85–106Parasitic (2019) copepods on fishes from the lagoon flats of Palmyra Atoll, Central Pacific 85 doi: 10.3897/zookeys.833.30835 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Parasitic copepods (Crustacea, Hexanauplia) on fishes from the lagoon flats of Palmyra Atoll, Central Pacific Lilia C. Soler-Jiménez1, F. Neptalí Morales-Serna2, Ma. Leopoldina Aguirre- Macedo1,3, John P. McLaughlin3, Alejandra G. Jaramillo3, Jenny C. Shaw3, Anna K. James3, Ryan F. Hechinger3,4, Armand M. Kuris3, Kevin D. Lafferty3,5, Victor M. Vidal-Martínez1,3 1 Laboratorio de Parasitología, Centro de Investigación y de Estudios Avanzados del IPN (CINVESTAV- IPN) Unidad Mérida, Carretera Antigua a Progreso Km. 6, Mérida, Yucatán C.P. 97310, México 2 CONACYT, Centro de Investigación en Alimentación y Desarrollo, Unidad Académica Mazatlán en Acuicultura y Manejo Ambiental, Av. Sábalo Cerritos S/N, Mazatlán 82112, Sinaloa, México 3 Department of Ecology, Evolution and Marine Biology and Marine Science Institute, University of California, Santa Barbara CA 93106, USA 4 Scripps Institution of Oceanography-Marine Biology Research Division, University of California, San Diego, La Jolla, California 92093 USA 5 Western Ecological Research Center, U.S. Geological Survey, Marine Science Institute, University of California, Santa Barbara CA 93106, USA Corresponding author: Victor M. Vidal-Martínez ([email protected]) Academic editor: Danielle Defaye | Received 25 October 2018 |