Mycorrhiza Helper Bacteria: Future Prospects
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Pseudomonas Fluorescens 2P24 Yang Zhang1†, Bo Zhang1†, Haiyan Wu1, Xiaogang Wu1*, Qing Yan2* and Li-Qun Zhang3*
Zhang et al. BMC Microbiology (2020) 20:191 https://doi.org/10.1186/s12866-020-01880-x RESEARCH ARTICLE Open Access Pleiotropic effects of RsmA and RsmE proteins in Pseudomonas fluorescens 2P24 Yang Zhang1†, Bo Zhang1†, Haiyan Wu1, Xiaogang Wu1*, Qing Yan2* and Li-Qun Zhang3* Abstract Background: Pseudomonas fluorescens 2P24 is a rhizosphere bacterium that produces 2,4-diacetyphloroglucinol (2,4-DAPG) as the decisive secondary metabolite to suppress soilborne plant diseases. The biosynthesis of 2,4-DAPG is strictly regulated by the RsmA family proteins RsmA and RsmE. However, mutation of both of rsmA and rsmE genes results in reduced bacterial growth. Results: In this study, we showed that overproduction of 2,4-DAPG in the rsmA rsmE double mutant influenced the growth of strain 2P24. This delay of growth could be partially reversal when the phlD gene was deleted or overexpression of the phlG gene encoding the 2,4-DAPG hydrolase in the rsmA rsmE double mutant. RNA-seq analysis of the rsmA rsmE double mutant revealed that a substantial portion of the P. fluorescens genome was regulated by RsmA family proteins. These genes are involved in the regulation of 2,4-DAPG production, cell motility, carbon metabolism, and type six secretion system. Conclusions: These results suggest that RsmA and RsmE are the important regulators of genes involved in the plant- associated strain 2P24 ecologic fitness and operate a sophisticated mechanism for fine-tuning the concentration of 2,4-DAPG in the cells. Keywords: Pseudomonas fluorescens, RsmA/RsmE, 2,4-DAPG, Biofilm, Motility Background motility [5], the formation of biofilm [6], and the production Bacteria use a complex interconnecting mechanism to of secondary metabolites and virulence factors [7, 8]. -
Stability and Succession of the Rhizosphere Microbiota Depends Upon Plant Type and Soil Composition
The ISME Journal (2015) 9, 2349–2359 © 2015 International Society for Microbial Ecology All rights reserved 1751-7362/15 www.nature.com/ismej ORIGINAL ARTICLE Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition Andrzej Tkacz1,2, Jitender Cheema1,3, Govind Chandra1, Alastair Grant4 and Philip S Poole1,2 1Department of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, UK; 2Department of Plant Sciences, Oxford University, Oxford, UK; 3Department of Computational and Systems Biology, John Innes Centre, Norwich Research Park, Norwich, UK and 4Earth and Life Systems Alliance, The School of Environmental Sciences, University of East Anglia, Norwich, UK We examined succession of the rhizosphere microbiota of three model plants (Arabidopsis, Medicago and Brachypodium) in compost and sand and three crops (Brassica, Pisum and Triticum) in compost alone. We used serial inoculation of 24 independent replicate microcosms over three plant generations for each plant/soil combination. Stochastic variation between replicates was surprisingly weak and by the third generation, replicate microcosms for each plant had communities that were very similar to each other but different to those of other plants or unplanted soil. Microbiota diversity remained high in compost, but declined drastically in sand, with bacterial opportunists and putative autotrophs becoming dominant. These dramatic differences indicate that many microbes cannot thrive on plant exudates alone and presumably also require carbon sources and/or nutrients from soil. Arabidopsis had the weakest influence on its microbiota and in compost replicate microcosms converged on three alternative community compositions rather than a single distinctive community. Organisms selected in rhizospheres can have positive or negative effects. -
Enhanced Drought Tolerance Through Plant Growth Promoting
ENHANCED DROUGHT TOLERANCE THROUGH PLANT GROWTH PROMOTING RHIZOBACTERIA AND MICROBIOME ENGINEERING APPLICATIONS A Dissertation by MICHAEL DONOVAN JOCHUM JR. Submitted to the Office of Graduate and Professional Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Chair of Committee, Young-Ki Jo Committee Members, Elizabeth Pierson Heather Wilkson Leland Pierson III Head of Department, Leland Pierson III May 2019 Major Subject: Plant Pathology Copyright 2019 Michael Jochum Jr. ABSTRACT Water is a major limiting resource in agriculture worldwide, restricting crop yields in approximately 70 percent of arable farmlands. My goal was to alleviate drought stress in grasses using plant growth-promoting rhizobacteria (PGPR) and host-mediated microbiome engineering (HMME) of the rhizosphere. In the summers of 2016 and 2017, we collected bermudagrass rhizospheres from El Paso, TX for PGPR bioprospecting. Two novel isolates, Bacillus sp. (12D6) and Enterobacter sp. (16i) , were shown to delay the onset of drought stress in wheat (Triticum aestivum subsp. aestivum cultivar TAM 111) and maize (Zea maize cultivar B73) seedlings. Roots inoculated with these PGPR resulted in statistically significant alterations in root system architecture traits associated with drought tolerance in a host-specific manner. In the second part of this study, I employed host-mediated microbiome engineering to confer a generational increase in drought tolerance of wheat seedlings. In this host-centric artificial selection process, the wheat rhizosphere was sub-selected based on host phenotypic tolerance after a prolonged water deficit. After six rounds of microbiome engineering, seedlings growing in the engineered microbiome withstood an additional 5 days of water deficit compared to the initial microbiome. -
Ectomycorrhizal Fungal Communities at Forest Edges 93, 244–255 IAN A
Journal of Blackwell Publishing, Ltd. Ecology 2005 Ectomycorrhizal fungal communities at forest edges 93, 244–255 IAN A. DICKIE and PETER B. REICH Department of Forest Resources, University of Minnesota, St Paul, MN, USA Summary 1 Ectomycorrhizal fungi are spatially associated with established ectomycorrhizal vegetation, but the influence of distance from established vegetation on the presence, abundance, diversity and community composition of fungi is not well understood. 2 We examined mycorrhizal communities in two abandoned agricultural fields in Minnesota, USA, using Quercus macrocarpa seedlings as an in situ bioassay for ecto- mycorrhizal fungi from 0 to 20 m distance from the forest edge. 3 There were marked effects of distance on all aspects of fungal communities. The abundance of mycorrhiza was uniformly high near trees, declined rapidly around 15 m from the base of trees and was uniformly low at 20 m. All seedlings between 0 and 8 m distance from forest edges were ectomycorrhizal, but many seedlings at 16–20 m were uninfected in one of the two years of the study. Species richness of fungi also declined with distance from trees. 4 Different species of fungi were found at different distances from the edge. ‘Rare’ species (found only once or twice) dominated the community at 0 m, Russula spp. were dominants from 4 to 12 m, and Astraeus sp. and a Pezizalean fungus were abundant at 12 m to 20 m. Cenococcum geophilum, the most dominant species found, was abundant both near trees and distant from trees, with lowest relative abundance at intermediate distances. 5 Our data suggest that seedlings germinating at some distance from established ecto- mycorrhizal vegetation (15.5 m in the present study) have low levels of infection, at least in the first year of growth. -
Mycorrhization Between Cistus Ladanifer L. and Boletus Edulis Bull Is Enhanced by the Mycorrhiza Helper Bacteria Pseudomonas Fluorescens Migula
Mycorrhiza (2016) 26:161–168 DOI 10.1007/s00572-015-0657-0 ORIGINAL ARTICLE Mycorrhization between Cistus ladanifer L. and Boletus edulis Bull is enhanced by the mycorrhiza helper bacteria Pseudomonas fluorescens Migula Olaya Mediavilla1,2 & Jaime Olaizola2 & Luis Santos-del-Blanco1,3 & Juan Andrés Oria-de-Rueda1 & Pablo Martín-Pinto1 Received: 30 April 2015 /Accepted: 16 July 2015 /Published online: 26 July 2015 # Springer-Verlag Berlin Heidelberg 2015 Abstract Boletus edulis Bull. is one of the most economically work was to optimize an in vitro protocol for the mycorrhizal and gastronomically valuable fungi worldwide. Sporocarp synthesis of B. edulis with C. ladanifer by testing the effects of production normally occurs when symbiotically associated fungal culture time and coinoculation with the helper bacteria with a number of tree species in stands over 40 years old, Pseudomonas fluorescens Migula. The results confirmed suc- but it has also been reported in 3-year-old Cistus ladanifer cessful mycorrhizal synthesis between C. ladanifer and L. shrubs. Efforts toward the domestication of B. edulis have B. edulis. Coinoculation of B. edulis with P. fluorescens dou- thus focused on successfully generating C. ladanifer seedlings bled within-plant mycorrhization levels although it did not associated with B. edulis under controlled conditions. Micro- result in an increased number of seedlings colonized with organisms have an important role mediating mycorrhizal sym- B. edulis mycorrhizae. B. edulis mycelium culture time also biosis, such as some bacteria species which enhance mycor- increased mycorrhization levels but not the presence of my- rhiza formation (mycorrhiza helper bacteria). Thus, in this corrhizae. These findings bring us closer to controlled B. -
Boletus Edulis and Cistus Ladanifer: Characterization of Its Ectomycorrhizae, in Vitro Synthesis, and Realised Niche
UNIVERSIDAD DE MURCIA ESCUELA INTERNACIONAL DE DOCTORADO Boletus edulis and Cistus ladanifer: characterization of its ectomycorrhizae, in vitro synthesis, and realised niche. Boletus edulis y Cistus ladanifer: caracterización de sus ectomicorrizas, síntesis in vitro y área potencial. Dª. Beatriz Águeda Hernández 2014 UNIVERSIDAD DE MURCIA ESCUELA INTERNACIONAL DE DOCTORADO Boletus edulis AND Cistus ladanifer: CHARACTERIZATION OF ITS ECTOMYCORRHIZAE, in vitro SYNTHESIS, AND REALISED NICHE tesis doctoral BEATRIZ ÁGUEDA HERNÁNDEZ Memoria presentada para la obtención del grado de Doctor por la Universidad de Murcia: Dra. Luz Marina Fernández Toirán Directora, Universidad de Valladolid Dra. Asunción Morte Gómez Tutora, Universidad de Murcia 2014 Dª. Luz Marina Fernández Toirán, Profesora Contratada Doctora de la Universidad de Valladolid, como Directora, y Dª. Asunción Morte Gómez, Profesora Titular de la Universidad de Murcia, como Tutora, AUTORIZAN: La presentación de la Tesis Doctoral titulada: ‘Boletus edulis and Cistus ladanifer: characterization of its ectomycorrhizae, in vitro synthesis, and realised niche’, realizada por Dª Beatriz Águeda Hernández, bajo nuestra inmediata dirección y supervisión, y que presenta para la obtención del grado de Doctor por la Universidad de Murcia. En Murcia, a 31 de julio de 2014 Dra. Luz Marina Fernández Toirán Dra. Asunción Morte Gómez Área de Botánica. Departamento de Biología Vegetal Campus Universitario de Espinardo. 30100 Murcia T. 868 887 007 – www.um.es/web/biologia-vegetal Not everything that can be counted counts, and not everything that counts can be counted. Albert Einstein Le petit prince, alors, ne put contenir son admiration: -Que vous êtes belle! -N´est-ce pas, répondit doucement la fleur. Et je suis née meme temps que le soleil.. -
The Associated Growth of Pseudomonas Fluorescens
THE ASSOCIATED GROWTH OF PSEUDOMONAS FLUORESCENS, ESCHERICHIA COLI AND / OR LACTOBACILLUS PLANTARUM IN ASEPTICALLY-PREPARED FRESH GROUND BEEF AT 7 °C OR AT 4 AND 25 °C OF STORAGE DISSERTATION Presented in Partial Fulfillment of the requirements of the Degree Doctor of Philosophy in the Graduate School of the Ohio State University By Yi-Mei Sun, M.S. ***** The Ohio State University 2003 Dissertation Committee: Prof. Herbert W. Ockerman, Advisor Approved by Prof. John C. Gordon Prof. Curtis L. Knipe ___________________________ Advisor Prof. Ahmed E. Yousef Department of Animal Sciences UMI Number: 3119496 ________________________________________________________ UMI Microform 3119496 Copyright 2004 by ProQuest Information and Learning Company. All rights reserved. This microform edition is protected against unauthorized copying under Title 17, United States Code. ____________________________________________________________ ProQuest Information and Learning Company 300 North Zeeb Road PO Box 1346 Ann Arbor, MI 48106-1346 ABSTRACT This research was conducted to understand the interactions between normal background microorganisms (Pseudomonas and Lactobacillus) and Escherichia coli on solid food such as fresh ground beef. By using aseptically-obtained fresh ground beef as a model, different levels of background bacteria along with different levels of E. coli were inoculated and applied in three experiments at different storage temperatures. In Experiment I, three levels (zero, 3 logs and 6 logs) of Pseudomonas were combined with three levels (zero, 2 logs and 4 logs) of E. coli and stored at 7 ºC for 7 days. One log increase of VRBA (E. coli) counts was observed for treatments with 2 log E. coli inoculation but no changes were found for treatments with 4 log E. -
In-Vitro Evaluation of Pseudomonas Fluorescens Antibacterial Activity Against Listeria Spp. Isolated from New Zealand Horticultu
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.03.183277; this version posted July 3, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 In-vitro evaluation of Pseudomonas fluorescens 2 antibacterial activity against Listeria spp. isolated from 3 New Zealand horticultural environments 4 Vathsala Mohan1, Graham Fletcher1* and Françoise Leroi2 5 1: The New Zealand Institute for Plant and Food Research, Private Bag 92169, Auckland, NZ. 6 2: IFREMER, Laboratoire de Génie Alimentaire, BP 21105, 44311 Nantes cedex 3, France 7 *: Corresponding author. Email: [email protected] 8 9 10 Abstract 11 Beneficial bacteria with antibacterial properties are an attractive alternative to chemical- 12 based antibacterial or bactericidal agents. The aim of our study was to source such bacteria 13 from horticultural produce and environments and to explore the mechanisms of their 14 antimicrobial properties. Four strains of Pseudomonas fluorescens were isolated that 15 possessed antibacterial activity against the pathogen Listeria monocytogenes. These strains 16 (PFR46H06, PFR46H07, PFR46H08 and PFR46H09) were tested against L. monocytogenes 17 (n=31), L. seeligeri (n=1) and L. innocua (n=1) isolated from seafood and horticultural 18 sources, and two L. monocytogenes from clinical cases (Scott A and ATCC 49594, n=2). All 19 Listeria strains were inhibited by the three strains PFR46H07, PFR46H08 and PFR46H09 with 20 average zones of inhibition of 14.8, 15.1 and 18.2 mm, respectively, with PFR46H09 having 21 significantly more inhibition than the other two (p<0.05). -
Nitrogen Fixing and Phosphate Mineralizing Bacterial Communities in Sweet Potato Rhizosphere Show a Genotype-Dependent Distribution
diversity Article Nitrogen Fixing and Phosphate Mineralizing Bacterial Communities in Sweet Potato Rhizosphere Show a Genotype-Dependent Distribution Joana Montezano Marques 1, Jackeline Rossetti Mateus 2, Thais Freitas da Silva 2, Camila Rattes de Almeida Couto 2, Arie Fitzgerald Blank 3 and Lucy Seldin 2,* 1 Instituto de Ciências Biológicas, Centro de Genômica e Biologia de Sistemas, Universidade Federal do Pará, Av. Augusto Corrêa, 01, Guamá, CEP 66.075-110, Belém, PA, Brazil; [email protected] 2 Instituto de Microbiologia Paulo de Góes (IMPPG), Universidade Federal do Rio de Janeiro, Centro de Ciências da Saúde, Bloco I, Ilha do Fundão, CEP 21941-590, Rio de Janeiro, RJ, Brazil; [email protected] (J.R.M.); [email protected] (T.F.d.S.); [email protected] (C.R.d.A.C.) 3 Departamento de Engenharia Agronômica, Universidade Federal de Sergipe, Av. Marechal Rondon S/N, CEP 49100-000, São Cristóvão, SE, Brazil; [email protected] * Correspondence: [email protected]; Tel.: +55-213-938-6741; Fax: +55-212-560-8344 Received: 23 October 2019; Accepted: 28 November 2019; Published: 3 December 2019 Abstract: We hypothesize that sweet potato genotypes can influence the bacterial communities related to phosphate mineralization and nitrogen fixation in the rhizosphere. Tuberous roots of field-grown sweet potato from genotypes IPB-149, IPB-052, and IPB-137 were sampled three and six months after planting. The total community DNA was extracted from the rhizosphere and analyzed by Polymerase Chain Reaction-Denaturing Gradient Gel Electrophoresis (PCR-DGGE) and quantitative real-time PCR (qPCR), based on the alkaline phosphatase coding gene (alp gene) and on the nitrogenase coding gene (nifH gene). -
Arbuscular Mycorrhizas: Producing and Applying Arbuscular Mycorrhizal Inoculum
Arbuscular Mycorrhizas: Producing and Applying Arbuscular Mycorrhizal Inoculum M. Habte and N. W. Osorio Department of Tropical Plant and Soil Sciences Acknowledgments the United States Department of Agriculture, nor the We are grateful to Dr. Mark Brundrett, who generously author shall be liable for any damage or injury resulting gave us permission to use his drawings, including the from the use of or reliance on the information contained one on the cover, in this publication. in this publication or from any omissions to this publi This work was funded by the Hawaii Renewable cation. Mention of a company, trade, or product name Resources Extension Program, supported by RREA or display of a proprietary product does not imply ap Smith-Lever 3D funds from CSREES/USDA. proval or recommendation of the company or product to the exclusion of others that may also be suitable. About this publication This information may be updated in more recent The information contained herein is subject to change publications posted on the CTAHR Web site, <www2. or correction. Procedures described should be consid ctahr.hawaii.edu>. For information on obtaining addi ered as suggestions only. To the knowledge of the au tional copies of this book, contact the Publications and thor, the information given is accurate as of July 2001. Information Office, CTAHR–UHM, 3050 Maile Way Neither the University of Hawaii at Manoa, the UH (Gilmore Hall 119), Honolulu, HI 96822; 808-956-7036; College of Tropical Agriculture and Human Resources, 808-956-5966 (fax); e-mail <ctahrpub@ hawaii.edu>. Table of contents Arbuscular mycorrhizal associations ......................................................................... -
Effectiveness of Exopolysaccharides and Biofilm Forming Plant Growth Promoting Rhizobacteria on Salinity Tolerance of Faba Bean (Vicia Faba L.)
Vol. 12(17), pp. 399-404, 7 May, 2018 DOI: 10.5897/AJMR2018.8822 Article Number: 2E927E057083 ISSN 1996-0808 Copyright © 2018 Author(s) retain the copyright of this article African Journal of Microbiology Research http://www.academicjournals.org/AJMR Full Length Research Paper Effectiveness of exopolysaccharides and biofilm forming plant growth promoting rhizobacteria on salinity tolerance of faba bean (Vicia faba L.) Alaa Fathalla Mohammed Department of Agric. Botany, Faculty of Agriculture, Suez Canal University, Ismailia, Egypt. Received 22 February, 2018; Accepted 27 March, 2018 This study aimed to investigate the production of biofilm and exopolysaccharides by plant growth promoting rhizobacteria (PGPR) under different salt concentrations. In this study, the activity of biofilm formation and exopolysaccharides production by 20 strains of PGPR which previously isolated and identified from root samples of different crops were determined under different salt concentrations. Out of 20 strains, only 12 PGPR strains have the ability to form biofilm at 0.0, 50, 100 and 150 mM NaCl concentration. PGPR strains with the highest activity of biofilm formation and exopolysaccharides production were selected to check them on the faba bean plants under different concentration of salt stress. Inoculation with PGPR strains increased plant growth at higher level of salt concentrations compared with their corresponding uninoculated ones. The strain Pseudomonas anguilliseptica SAW 24 showed the highest activity of biofilm formation and exopolysaccharides production at different NaCl concentrations furthermore, gave the highest records of plant height (cm), fresh and dry weight (g/plant) of faba bean plants. The activities of biofilm formation and exopolysaccharides production of plant growth promoting bacteria enhance faba bean plants against different salt concentrations. -
Targeting the Burkholderia Cepacia Complex
viruses Review Advances in Phage Therapy: Targeting the Burkholderia cepacia Complex Philip Lauman and Jonathan J. Dennis * Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada; [email protected] * Correspondence: [email protected]; Tel.: +1-780-492-2529 Abstract: The increasing prevalence and worldwide distribution of multidrug-resistant bacterial pathogens is an imminent danger to public health and threatens virtually all aspects of modern medicine. Particularly concerning, yet insufficiently addressed, are the members of the Burkholderia cepacia complex (Bcc), a group of at least twenty opportunistic, hospital-transmitted, and notoriously drug-resistant species, which infect and cause morbidity in patients who are immunocompromised and those afflicted with chronic illnesses, including cystic fibrosis (CF) and chronic granulomatous disease (CGD). One potential solution to the antimicrobial resistance crisis is phage therapy—the use of phages for the treatment of bacterial infections. Although phage therapy has a long and somewhat checkered history, an impressive volume of modern research has been amassed in the past decades to show that when applied through specific, scientifically supported treatment strategies, phage therapy is highly efficacious and is a promising avenue against drug-resistant and difficult-to-treat pathogens, such as the Bcc. In this review, we discuss the clinical significance of the Bcc, the advantages of phage therapy, and the theoretical and clinical advancements made in phage therapy in general over the past decades, and apply these concepts specifically to the nascent, but growing and rapidly developing, field of Bcc phage therapy. Keywords: Burkholderia cepacia complex (Bcc); bacteria; pathogenesis; antibiotic resistance; bacterio- phages; phages; phage therapy; phage therapy treatment strategies; Bcc phage therapy Citation: Lauman, P.; Dennis, J.J.