The Associated Growth of Pseudomonas Fluorescens
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Pseudomonas Fluorescens 2P24 Yang Zhang1†, Bo Zhang1†, Haiyan Wu1, Xiaogang Wu1*, Qing Yan2* and Li-Qun Zhang3*
Zhang et al. BMC Microbiology (2020) 20:191 https://doi.org/10.1186/s12866-020-01880-x RESEARCH ARTICLE Open Access Pleiotropic effects of RsmA and RsmE proteins in Pseudomonas fluorescens 2P24 Yang Zhang1†, Bo Zhang1†, Haiyan Wu1, Xiaogang Wu1*, Qing Yan2* and Li-Qun Zhang3* Abstract Background: Pseudomonas fluorescens 2P24 is a rhizosphere bacterium that produces 2,4-diacetyphloroglucinol (2,4-DAPG) as the decisive secondary metabolite to suppress soilborne plant diseases. The biosynthesis of 2,4-DAPG is strictly regulated by the RsmA family proteins RsmA and RsmE. However, mutation of both of rsmA and rsmE genes results in reduced bacterial growth. Results: In this study, we showed that overproduction of 2,4-DAPG in the rsmA rsmE double mutant influenced the growth of strain 2P24. This delay of growth could be partially reversal when the phlD gene was deleted or overexpression of the phlG gene encoding the 2,4-DAPG hydrolase in the rsmA rsmE double mutant. RNA-seq analysis of the rsmA rsmE double mutant revealed that a substantial portion of the P. fluorescens genome was regulated by RsmA family proteins. These genes are involved in the regulation of 2,4-DAPG production, cell motility, carbon metabolism, and type six secretion system. Conclusions: These results suggest that RsmA and RsmE are the important regulators of genes involved in the plant- associated strain 2P24 ecologic fitness and operate a sophisticated mechanism for fine-tuning the concentration of 2,4-DAPG in the cells. Keywords: Pseudomonas fluorescens, RsmA/RsmE, 2,4-DAPG, Biofilm, Motility Background motility [5], the formation of biofilm [6], and the production Bacteria use a complex interconnecting mechanism to of secondary metabolites and virulence factors [7, 8]. -
Response of Heterotrophic Stream Biofilm Communities to a Gradient of Resources
The following supplement accompanies the article Response of heterotrophic stream biofilm communities to a gradient of resources D. J. Van Horn1,*, R. L. Sinsabaugh1, C. D. Takacs-Vesbach1, K. R. Mitchell1,2, C. N. Dahm1 1Department of Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA 2Present address: Department of Microbiology & Immunology, University of British Columbia Life Sciences Centre, Vancouver BC V6T 1Z3, Canada *Email: [email protected] Aquatic Microbial Ecology 64:149–161 (2011) Table S1. Representative sequences for each OTU, associated GenBank accession numbers, and taxonomic classifications with bootstrap values (in parentheses), generated in mothur using 14956 reference sequences from the SILVA data base Treatment Accession Sequence name SILVA taxonomy classification number Control JF695047 BF8FCONT18Fa04.b1 Bacteria(100);Proteobacteria(100);Gammaproteobacteria(100);Pseudomonadales(100);Pseudomonadaceae(100);Cellvibrio(100);unclassified; Control JF695049 BF8FCONT18Fa12.b1 Bacteria(100);Proteobacteria(100);Alphaproteobacteria(100);Rhizobiales(100);Methylocystaceae(100);uncultured(100);unclassified; Control JF695054 BF8FCONT18Fc01.b1 Bacteria(100);Planctomycetes(100);Planctomycetacia(100);Planctomycetales(100);Planctomycetaceae(100);Isosphaera(50);unclassified; Control JF695056 BF8FCONT18Fc04.b1 Bacteria(100);Proteobacteria(100);Gammaproteobacteria(100);Xanthomonadales(100);Xanthomonadaceae(100);uncultured(64);unclassified; Control JF695057 BF8FCONT18Fc06.b1 Bacteria(100);Proteobacteria(100);Betaproteobacteria(100);Burkholderiales(100);Comamonadaceae(100);Ideonella(54);unclassified; -
BEI Resources Product Information Sheet Catalog No. NR-51597 Pseudomonas Aeruginosa, Strain MRSN 23861
Product Information Sheet for NR-51597 Pseudomonas aeruginosa, Strain MRSN P. aeruginosa is a Gram-negative, aerobic, rod-shaped bacterium with unipolar motility that thrives in many diverse 23861 environments including soil, water and certain eukaryotic hosts. It is a key emerging opportunistic pathogen in animals, Catalog No. NR-51597 including humans and plants. While it rarely infects healthy This reagent is the tangible property of the U.S. Government. individuals, P. aeruginosa causes severe acute and chronic nosocomial infections in immunocompromised or catheterized patients, especially in patients with cystic fibrosis, burns, For research use only. Not for human use. cancer or HIV.3-5 Infections of this type are often highly antibiotic resistant, difficult to eradicate and often lead to Contributor: death. The ability of P. aeruginosa to survive on minimal Multidrug-Resistant Organism Repository and Surveillance nutritional requirements, tolerate a variety of physical Network (MRSN), Bacterial Disease Branch, Walter Reed conditions and rapidly develop resistance during the course of Army Institute of Research, Silver Spring, Maryland, USA therapy has allowed it to persist in both community and 5,6 hospital settings. Manufacturer: BEI Resources Material Provided: Each vial contains approximately 0.5 mL of bacterial culture in Product Description: Tryptic Soy broth supplemented with 10% glycerol. Bacteria Classification: Pseudomonadaceae, Pseudomonas Species: Pseudomonas aeruginosa Note: If homogeneity is required for your intended use, please Strain: MRSN 23861 purify prior to initiating work. Original Source: Pseudomonas aeruginosa (P. aeruginosa), strain MRSN 23861 was isolated in 2014 from a human Packaging/Storage: respiratory sample as part of a surveillance program in the NR-51597 was packaged aseptically in cryovials. -
Characterization of Environmental and Cultivable Antibiotic- Resistant Microbial Communities Associated with Wastewater Treatment
antibiotics Article Characterization of Environmental and Cultivable Antibiotic- Resistant Microbial Communities Associated with Wastewater Treatment Alicia Sorgen 1, James Johnson 2, Kevin Lambirth 2, Sandra M. Clinton 3 , Molly Redmond 1 , Anthony Fodor 2 and Cynthia Gibas 2,* 1 Department of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA; [email protected] (A.S.); [email protected] (M.R.) 2 Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC 28223, USA; [email protected] (J.J.); [email protected] (K.L.); [email protected] (A.F.) 3 Department of Geography & Earth Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-704-687-8378 Abstract: Bacterial resistance to antibiotics is a growing global concern, threatening human and environmental health, particularly among urban populations. Wastewater treatment plants (WWTPs) are thought to be “hotspots” for antibiotic resistance dissemination. The conditions of WWTPs, in conjunction with the persistence of commonly used antibiotics, may favor the selection and transfer of resistance genes among bacterial populations. WWTPs provide an important ecological niche to examine the spread of antibiotic resistance. We used heterotrophic plate count methods to identify Citation: Sorgen, A.; Johnson, J.; phenotypically resistant cultivable portions of these bacterial communities and characterized the Lambirth, K.; Clinton, -
Staphylococcus Spp., Enterobacteriaceae and Pseudomonadaceae
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector a r c h i v e s o f o r a l b i o l o g y 5 6 ( 2 0 1 1 ) 1 0 4 1 – 1 0 4 6 availab le at www.sciencedirect.com journal homepage: http://www.elsevier.com/locate/aob Staphylococcus spp., Enterobacteriaceae and Pseudomonadaceae oral isolates from Brazilian HIV-positive patients. Correlation with CD4 cell counts and viral load a, a Graziella Nuernberg Back-Brito *, Vivian Narana Ribeiro El Ackhar , a b Silvia Maria Rodrigues Querido , Silvana Sole´o Ferreira dos Santos , a c Antonio Olavo Cardoso Jorge , Alexandre de Souza de Macedo Reis , a Cristiane Yumi Koga-Ito a Department of Oral Biosciences and Diagnosis, Laboratory of Microbiology, Sa˜ o Jose´ dos Campos Dental School, Univ Estadual Paulista/ UNESP, Brazil b Microbiology, University of Taubate´, Brazil c Day Hospital, University of Taubate´, Brazil a r t i c l e i n f o a b s t r a c t Article history: The aim was to evaluate the presence of Staphylococcus spp., Enterobacteriaceae and Pseudo- Accepted 23 February 2011 monadaceae in the oral cavities of HIV-positive patients. Forty-five individuals diagnosed as HIV-positive by ELISA and Western-blot, and under anti-retroviral therapy for at least 1 year, Keywords: were included in the study. The control group constituted 45 systemically healthy individu- HIV als matched to the HIV patients to gender, age and oral conditions. -
Pseudomonas Syringae Pv. Actinidiae Takikdawa Et Al
JUL10Pathogen of the month – July 2010 . 1989 et al a b cdc Fig. 1. Drop of white exudate from an infected kiwifruit shoot (a); production of red exudate from an infected cane (b); an infected shoot wilting and dying in early summer (c); and small angular necrotic leaf spots caused by Pseudomonas syringae pv actinidiae (d). Photo credits J. L. Vanneste. Disease: Bacterial canker of kiwifruit Classification: D: Bacteria, C: Gammaproteobacteria, O: Pseudomonadales, F: Pseudomonadaceae Takikdawa Bacterial canker of kiwifruit (Fig. 1), caused by the bacterium Pseudomonas syringae pv. actinidiae (Psa), affects different species of Actinidia including A. deliciosa and A. chinensis, the two species that constitute the majority of kiwifruit (green and yellow-fleshed) grown commercially around the world. This pathogen was first described in Japan in 1984. It was subsequently isolated in Korea and in Italy. Its economical impact can be significant, as is the case with the current outbreak in Latina (Italy). Distribution and Host Range: During summer the most visible symptoms are small This disease is present in Japan, Korea and Italy. angular necrotic spots on leaves, often surrounded by Earlier reports of bacterial canker of kiwifruit from a yellow halo. This halo reveals production by the Iran and the USA refer to a different disease caused pathogen of phytotoxins such as phaseolotoxin or . actinidiae by the related pathogen P. s. pv. syringae. New coronatine. However, not all strains of Psa produce Zealand and Australia are free of the disease. those toxins. During harvest and leaf fall, when environmental pv Symptoms and Life Cycle: conditions are still warm and showery, the bacteria Infections occur preferentially when the can move into these wounds and lay dormant until temperatures are relatively low, such as in spring spring. -
In-Vitro Evaluation of Pseudomonas Fluorescens Antibacterial Activity Against Listeria Spp. Isolated from New Zealand Horticultu
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.03.183277; this version posted July 3, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 In-vitro evaluation of Pseudomonas fluorescens 2 antibacterial activity against Listeria spp. isolated from 3 New Zealand horticultural environments 4 Vathsala Mohan1, Graham Fletcher1* and Françoise Leroi2 5 1: The New Zealand Institute for Plant and Food Research, Private Bag 92169, Auckland, NZ. 6 2: IFREMER, Laboratoire de Génie Alimentaire, BP 21105, 44311 Nantes cedex 3, France 7 *: Corresponding author. Email: [email protected] 8 9 10 Abstract 11 Beneficial bacteria with antibacterial properties are an attractive alternative to chemical- 12 based antibacterial or bactericidal agents. The aim of our study was to source such bacteria 13 from horticultural produce and environments and to explore the mechanisms of their 14 antimicrobial properties. Four strains of Pseudomonas fluorescens were isolated that 15 possessed antibacterial activity against the pathogen Listeria monocytogenes. These strains 16 (PFR46H06, PFR46H07, PFR46H08 and PFR46H09) were tested against L. monocytogenes 17 (n=31), L. seeligeri (n=1) and L. innocua (n=1) isolated from seafood and horticultural 18 sources, and two L. monocytogenes from clinical cases (Scott A and ATCC 49594, n=2). All 19 Listeria strains were inhibited by the three strains PFR46H07, PFR46H08 and PFR46H09 with 20 average zones of inhibition of 14.8, 15.1 and 18.2 mm, respectively, with PFR46H09 having 21 significantly more inhibition than the other two (p<0.05). -
Sequence of the Pseudomonas Syringae Oprf Gene CATHERINE A
JOURNAL OF BACTERIOLOGY, Jan. 1991, p. 768-775 Vol. 173, No. 2 0021-9193/91/020768-08$02.00/0 Copyright © 1991, American Society for Microbiology Conservation of the Gene for Outer Membrane Protein OprF in the Family Pseudomonadaceae: Sequence of the Pseudomonas syringae oprF Gene CATHERINE A. ULLSTROM,1 RICHARD SIEHNEL,1 WENDY WOODRUFF,' SUZANNE STEINBACH,2 AND ROBERT E. W. HANCOCK'* Department ofMicrobiology, University ofBritish Columbia, Vancouver, British Columbia V6T I W5, Canada,' and Maxwell Finland Laboratory for Infectious Diseases, Department ofPediatrics, Boston University School ofPublic Health, Boston, Massachusetts 021182 Received 27 June 1990/Accepted 26 October 1990 The conservation of the oprF gene for the major outer membrane protein OprF was determined by restriction mapping and Southern blot hybridization with the Pseudomonas aeruginosa oprF gene as a probe. The restriction map was highly conserved among 16 of the 17 serotype type strains and 42 clinical isolates of Downloaded from P. aeruginosa. Only the serotype 12 isolate and one clinical isolate showed small differences in restriction pattern. Southern probing of PstI chromosomal digests of 14 species from the family Pseudomonadaceae revealed that only the nine members of rRNA homology group I hybridized with the oprF gene. To reveal the actual extent of homology, the oprF gene and its product were characterized in Pseudomonas syringae. Nine strains of P. syringae from seven different pathovars hybridized with the P. aeruginosa gene to produce five different but related restriction maps. All produced an OprF protein in their outer membranes with the same jb.asm.org apparent molecular weight as that of P. -
Supplementary Information Prompt Response of Estuarine Denitrifying
Electronic Supplementary Material (ESI) for Environmental Science: Nano. This journal is © The Royal Society of Chemistry 2021 Supplementary Information Prompt response of estuarine denitrifying bacterial communities to copper nanoparticles at relevant environmental concentrations Joana Costa1, António G.G. Sousa1, Ana Carolina Carneiro1,2, Ana Paula Mucha1,2, C. Marisa R. Almeida1,3, Catarina Magalhães1,2,4,5, Mafalda S. Baptista1,3,6 * * [email protected] 1 CIIMAR/CIMAR – Centro Interdisciplinar de Investigação Marinha e Ambiental, Universidade do Porto, Matosinhos, Portugal 2 Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Porto, Portugal 3 Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade do Porto, Porto, Portugal 4 School of Science, University of Waikato, Hamilton, New Zealand 5 Ocean Frontier Institute, Dalhousie University, Canada 6 International Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand Supplementary Experimental Selection of primers targeting nitrite and nitrous oxide reductase genes Both nitrite (nir) and nitrous oxide (nosZ) reductase genes have been shown to exhibit phylogenetic distinct clades and to harbour taxonomically diverse microorganisms.1–4 This has posed challenges to the design of primers that are both unambiguous and comprehensive of the denitrifier diversity. Common primers for nitrite reductase nirK gene are F1aCu/R3Cu 5 and nirK2F/nirK5R;6 for nirS gene are cd3aF/R3cd7,8 and nirS2F/nirS4R. 6 At the time these were designed the sequences available were mostly from Proteobacteria strains, which 1 narrowed the diversity of these genes to this taxon. Nowadays they are still commonly used but advances in culture-independent methods to investigate the microbial community composition allowed the identification of nir genes across diverse taxonomic groups. -
Targeting the Burkholderia Cepacia Complex
viruses Review Advances in Phage Therapy: Targeting the Burkholderia cepacia Complex Philip Lauman and Jonathan J. Dennis * Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada; [email protected] * Correspondence: [email protected]; Tel.: +1-780-492-2529 Abstract: The increasing prevalence and worldwide distribution of multidrug-resistant bacterial pathogens is an imminent danger to public health and threatens virtually all aspects of modern medicine. Particularly concerning, yet insufficiently addressed, are the members of the Burkholderia cepacia complex (Bcc), a group of at least twenty opportunistic, hospital-transmitted, and notoriously drug-resistant species, which infect and cause morbidity in patients who are immunocompromised and those afflicted with chronic illnesses, including cystic fibrosis (CF) and chronic granulomatous disease (CGD). One potential solution to the antimicrobial resistance crisis is phage therapy—the use of phages for the treatment of bacterial infections. Although phage therapy has a long and somewhat checkered history, an impressive volume of modern research has been amassed in the past decades to show that when applied through specific, scientifically supported treatment strategies, phage therapy is highly efficacious and is a promising avenue against drug-resistant and difficult-to-treat pathogens, such as the Bcc. In this review, we discuss the clinical significance of the Bcc, the advantages of phage therapy, and the theoretical and clinical advancements made in phage therapy in general over the past decades, and apply these concepts specifically to the nascent, but growing and rapidly developing, field of Bcc phage therapy. Keywords: Burkholderia cepacia complex (Bcc); bacteria; pathogenesis; antibiotic resistance; bacterio- phages; phages; phage therapy; phage therapy treatment strategies; Bcc phage therapy Citation: Lauman, P.; Dennis, J.J. -
Università Degli Studi Di Padova Dipartimento Di Biomedicina Comparata Ed Alimentazione
UNIVERSITÀ DEGLI STUDI DI PADOVA DIPARTIMENTO DI BIOMEDICINA COMPARATA ED ALIMENTAZIONE SCUOLA DI DOTTORATO IN SCIENZE VETERINARIE Curriculum Unico Ciclo XXVIII PhD Thesis INTO THE BLUE: Spoilage phenotypes of Pseudomonas fluorescens in food matrices Director of the School: Illustrious Professor Gianfranco Gabai Department of Comparative Biomedicine and Food Science Supervisor: Dr Barbara Cardazzo Department of Comparative Biomedicine and Food Science PhD Student: Andreani Nadia Andrea 1061930 Academic year 2015 To my family of origin and my family that is to be To my beloved uncle Piero Science needs freedom, and freedom presupposes responsibility… (Professor Gerhard Gottschalk, Göttingen, 30th September 2015, ProkaGENOMICS Conference) Table of Contents Table of Contents Table of Contents ..................................................................................................................... VII List of Tables............................................................................................................................. XI List of Illustrations ................................................................................................................ XIII ABSTRACT .............................................................................................................................. XV ESPOSIZIONE RIASSUNTIVA ............................................................................................ XVII ACKNOWLEDGEMENTS .................................................................................................... -
Pseudomonas Fluorescens F113 Type VI Secretion Systems Mediate
www.nature.com/scientificreports OPEN Pseudomonas fuorescens F113 type VI secretion systems mediate bacterial killing and adaption to the rhizosphere microbiome David Durán1, Patricia Bernal1,2, David Vazquez‑Arias1, Esther Blanco‑Romero1, Daniel Garrido‑Sanz1, Miguel Redondo‑Nieto1, Rafael Rivilla1 & Marta Martín1* The genome of Pseudomonas fuorescens F113, a model rhizobacterium and a plant growth‑promoting agent, encodes three putative type VI secretion systems (T6SSs); F1‑, F2‑ and F3‑T6SS. Bioinformatic analysis of the F113 T6SSs has revealed that they belong to group 3, group 1.1, and group 4a, respectively, similar to those previously described in Pseudomonas aeruginosa. In addition, in silico analyses allowed us to identify genes encoding a total of fve orphan VgrG proteins and eight putative efectors (Tfe), some with their cognate immunity protein (Tf) pairs. Genes encoding Tfe and Tf are found in the proximity of P. fuorescens F113 vgrG, hcp, eagR and tap genes. RNA‑Seq analyses in liquid culture and rhizosphere have revealed that F1‑ and F3‑T6SS are expressed under all conditions, indicating that they are active systems, while F2‑T6SS did not show any relevant expression under the tested conditions. The analysis of structural mutants in the three T6SSs has shown that the active F1‑ and F3‑T6SSs are involved in interbacterial killing while F2 is not active in these conditions and its role is still unknown.. A rhizosphere colonization analysis of the double mutant afected in the F1‑ and F3‑T6SS clusters showed that the double mutant was severely impaired in persistence in the rhizosphere microbiome, revealing the importance of these two systems for rhizosphere adaption.