bioRxiv preprint doi: https://doi.org/10.1101/563270; this version posted February 28, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. An Integrated Framework for Genome Analysis Reveals Numerous Previously Unrecognizable Structural Variants in Leukemia Patients’ Samples Jie Xu1*, Fan Song1,6*, Emily Schleicher1*, Christopher Pool3, Darrin Bann3, Max Hennessy3, Kathryn Sheldon2, Emma Batchelder2, Charyguly Annageldiyev4, Arati Sharma4, Yuanyuan Chang7, Alex Hastie7, Barbara Miller5, David Goldenberg3, Shin Mineishi5, David Claxton4, George-Lucian Moldovan1, Feng Yue1,2, James R. Broach1,2 1 Department of Biochemistry and 2 Institute for Personalized Medicine Penn State College of Medicine, Hershey, PA 17033 3 Department of Otolaryngology, 4 Department of Hematology Oncology, 5Departments of Pediatrics and Medicine PennState Health, Hershey Medical Center, Hershey, PA 17033 6 Huck Institute of Life Sciences, Penn State University, State College, PA 16802 7 Bionano Genomics, 9540 Towne Centre Drive, Suite 100, San Diego, CA 92121 *Contributed equally to the project. Corresponding author: James R. Broach
[email protected] 717-531-8586 Running title: Novel leukemia structural variants 1 bioRxiv preprint doi: https://doi.org/10.1101/563270; this version posted February 28, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Key Words: Acute myeloid leukemia Somatic mutation Genomic structural variants Optical mapping Karyotyping Chromothripsis Allelic imbalance Patient outcomes 2 bioRxiv preprint doi: https://doi.org/10.1101/563270; this version posted February 28, 2019.