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A Dated Phylogeny of Marsupials Using a Molecular Supermatrix and Multiple Fossil Constraints
Journal of Mammalogy, 89(1):175–189, 2008 A DATED PHYLOGENY OF MARSUPIALS USING A MOLECULAR SUPERMATRIX AND MULTIPLE FOSSIL CONSTRAINTS ROBIN M. D. BECK* School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia Downloaded from https://academic.oup.com/jmammal/article/89/1/175/1020874 by guest on 25 September 2021 Phylogenetic relationships within marsupials were investigated based on a 20.1-kilobase molecular supermatrix comprising 7 nuclear and 15 mitochondrial genes analyzed using both maximum likelihood and Bayesian approaches and 3 different partitioning strategies. The study revealed that base composition bias in the 3rd codon positions of mitochondrial genes misled even the partitioned maximum-likelihood analyses, whereas Bayesian analyses were less affected. After correcting for base composition bias, monophyly of the currently recognized marsupial orders, of Australidelphia, and of a clade comprising Dasyuromorphia, Notoryctes,and Peramelemorphia, were supported strongly by both Bayesian posterior probabilities and maximum-likelihood bootstrap values. Monophyly of the Australasian marsupials, of Notoryctes þ Dasyuromorphia, and of Caenolestes þ Australidelphia were less well supported. Within Diprotodontia, Burramyidae þ Phalangeridae received relatively strong support. Divergence dates calculated using a Bayesian relaxed molecular clock and multiple age constraints suggested at least 3 independent dispersals of marsupials from North to South America during the Late Cretaceous or early Paleocene. Within the Australasian clade, the macropodine radiation, the divergence of phascogaline and dasyurine dasyurids, and the divergence of perameline and peroryctine peramelemorphians all coincided with periods of significant environmental change during the Miocene. An analysis of ‘‘unrepresented basal branch lengths’’ suggests that the fossil record is particularly poor for didelphids and most groups within the Australasian radiation. -
Calaby References
Abbott, I.J. (1974). Natural history of Curtis Island, Bass Strait. 5. Birds, with some notes on mammal trapping. Papers and Proceedings of the Royal Society of Tasmania 107: 171–74. General; Rodents; Abbott, I. (1978). Seabird islands No. 56 Michaelmas Island, King George Sound, Western Australia. Corella 2: 26–27. (Records rabbit and Rattus fuscipes). General; Rodents; Lagomorphs; Abbott, I. (1981). Seabird Islands No. 106 Mondrain Island, Archipelago of the Recherche, Western Australia. Corella 5: 60–61. (Records bush-rat and rock-wallaby). General; Rodents; Abbott, I. and Watson, J.R. (1978). The soils, flora, vegetation and vertebrate fauna of Chatham Island, Western Australia. Journal of the Royal Society of Western Australia 60: 65–70. (Only mammal is Rattus fuscipes). General; Rodents; Adams, D.B. (1980). Motivational systems of agonistic behaviour in muroid rodents: a comparative review and neural model. Aggressive Behavior 6: 295–346. Rodents; Ahern, L.D., Brown, P.R., Robertson, P. and Seebeck, J.H. (1985). Application of a taxon priority system to some Victorian vertebrate fauna. Fisheries and Wildlife Service, Victoria, Arthur Rylah Institute of Environmental Research Technical Report No. 32: 1–48. General; Marsupials; Bats; Rodents; Whales; Land Carnivores; Aitken, P. (1968). Observations on Notomys fuscus (Wood Jones) (Muridae-Pseudomyinae) with notes on a new synonym. South Australian Naturalist 43: 37–45. Rodents; Aitken, P.F. (1969). The mammals of the Flinders Ranges. Pp. 255–356 in Corbett, D.W.P. (ed.) The natural history of the Flinders Ranges. Libraries Board of South Australia : Adelaide. (Gives descriptions and notes on the echidna, marsupials, murids, and bats recorded for the Flinders Ranges; also deals with the introduced mammals, including the dingo). -
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
J Mammal Evol DOI 10.1007/s10914-007-9062-6 ORIGINAL PAPER A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes Robert W. Meredith & Michael Westerman & Judd A. Case & Mark S. Springer # Springer Science + Business Media, LLC 2007 Abstract Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. -
MORNINGTON PENINSULA BIODIVERSITY: SURVEY and RESEARCH HIGHLIGHTS Design and Editing: Linda Bester, Universal Ecology Services
MORNINGTON PENINSULA BIODIVERSITY: SURVEY AND RESEARCH HIGHLIGHTS Design and editing: Linda Bester, Universal Ecology Services. General review: Sarah Caulton. Project manager: Garrique Pergl, Mornington Peninsula Shire. Photographs: Matthew Dell, Linda Bester, Malcolm Legg, Arthur Rylah Institute (ARI), Mornington Peninsula Shire, Russell Mawson, Bruce Fuhrer, Save Tootgarook Swamp, and Celine Yap. Maps: Mornington Peninsula Shire, Arthur Rylah Institute (ARI), and Practical Ecology. Further acknowledgements: This report was produced with the assistance and input of a number of ecological consultants, state agencies and Mornington Peninsula Shire community groups. The Shire is grateful to the many people that participated in the consultations and surveys informing this report. Acknowledgement of Country: The Mornington Peninsula Shire acknowledges Aboriginal and Torres Strait Islanders as the first Australians and recognises that they have a unique relationship with the land and water. The Shire also recognises the Mornington Peninsula is home to the Boonwurrung / Bunurong, members of the Kulin Nation, who have lived here for thousands of years and who have traditional connections and responsibilities to the land on which Council meets. Data sources - This booklet summarises the results of various biodiversity reports conducted for the Mornington Peninsula Shire: • Costen, A. and South, M. (2014) Tootgarook Wetland Ecological Character Description. Mornington Peninsula Shire. • Cook, D. (2013) Flora Survey and Weed Mapping at Tootgarook Swamp Bushland Reserve. Mornington Peninsula Shire. • Dell, M.D. and Bester L.R. (2006) Management and status of Leafy Greenhood (Pterostylis cucullata) populations within Mornington Peninsula Shire. Universal Ecology Services, Victoria. • Legg, M. (2014) Vertebrate fauna assessments of seven Mornington Peninsula Shire reserves located within Tootgarook Wetland. -
Translocations and Fauna Reconstruction Sites: Western Shield Review—February 2003
108 Conservation Science W. Aust. 5 (2) : 108–121P.R. Mawson (2004) Translocations and fauna reconstruction sites: Western Shield review—February 2003 PETER R. MAWSON1 1Senior Zoologist, Wildlife Branch , Department of Conservation and Land Management, Locked Bag 104 Bentley Delivery Centre WA 6983. [email protected] SUMMARY address this problem, but will result in slower progress towards future milestones for some species. The captive-breeding of western barred bandicoots Objectives has also been hampered by disease issues, but this problem is dealt with in more detail elsewhere in this edition (see The objectives of Western Shield with regard to fauna Morris et al. this issue). translocations were to re-introduce a range of native fauna There is a clear need to better define criteria that will species to a number of sites located primarily in the south- be used to determine the success or failure of translocation west of Western Australia. At some sites whole suites of programs, and for those same criteria to be included in fauna needed to be re-introduced, while at others only Recovery Plans and Interim Recovery Plans. one or a few species were targeted for re-introduction. A small number of the species that are currently the Integration of Western Shield activities with recovery subject of captive-breeding programs and or translocations actions and co-operative arrangements with community do not have Recovery Plans or Interim Recovery Plans, groups, wildlife carers, wildlife sanctuaries, Perth Zoo and contrary to CALM Policy Statement No. 50. In other educational outcomes were other key objectives. cases the priorities by which plans are written does not Achievements reflect the IUCN rank assigned those species by the Western Australian Threatened Species Scientific The fauna translocation objectives defined in the founding Committee. -
Quaternary Murid Rodents of Timor Part I: New Material of Coryphomys Buehleri Schaub, 1937, and Description of a Second Species of the Genus
QUATERNARY MURID RODENTS OF TIMOR PART I: NEW MATERIAL OF CORYPHOMYS BUEHLERI SCHAUB, 1937, AND DESCRIPTION OF A SECOND SPECIES OF THE GENUS K. P. APLIN Australian National Wildlife Collection, CSIRO Division of Sustainable Ecosystems, Canberra and Division of Vertebrate Zoology (Mammalogy) American Museum of Natural History ([email protected]) K. M. HELGEN Department of Vertebrate Zoology National Museum of Natural History Smithsonian Institution, Washington and Division of Vertebrate Zoology (Mammalogy) American Museum of Natural History ([email protected]) BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY Number 341, 80 pp., 21 figures, 4 tables Issued July 21, 2010 Copyright E American Museum of Natural History 2010 ISSN 0003-0090 CONTENTS Abstract.......................................................... 3 Introduction . ...................................................... 3 The environmental context ........................................... 5 Materialsandmethods.............................................. 7 Systematics....................................................... 11 Coryphomys Schaub, 1937 ........................................... 11 Coryphomys buehleri Schaub, 1937 . ................................... 12 Extended description of Coryphomys buehleri............................ 12 Coryphomys musseri, sp.nov.......................................... 25 Description.................................................... 26 Coryphomys, sp.indet.............................................. 34 Discussion . .................................................... -
Phylogenetic Relationships of Living and Recently Extinct Bandicoots Based on Nuclear and Mitochondrial DNA Sequences ⇑ M
Molecular Phylogenetics and Evolution 62 (2012) 97–108 Contents lists available at SciVerse ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenetic relationships of living and recently extinct bandicoots based on nuclear and mitochondrial DNA sequences ⇑ M. Westerman a, , B.P. Kear a,b, K. Aplin c, R.W. Meredith d, C. Emerling d, M.S. Springer d a Genetics Department, LaTrobe University, Bundoora, Victoria 3086, Australia b Palaeobiology Programme, Department of Earth Sciences, Uppsala University, Villavägen 16, SE-752 36 Uppsala, Sweden c Australian National Wildlife Collection, CSIRO Sustainable Ecosystems, Canberra, ACT 2601, Australia d Department of Biology, University of California, Riverside, CA 92521, USA article info abstract Article history: Bandicoots (Peramelemorphia) are a major order of australidelphian marsupials, which despite a fossil Received 4 November 2010 record spanning at least the past 25 million years and a pandemic Australasian range, remain poorly Revised 6 September 2011 understood in terms of their evolutionary relationships. Many living peramelemorphians are critically Accepted 12 September 2011 endangered, making this group an important focus for biological and conservation research. To establish Available online 11 November 2011 a phylogenetic framework for the group, we compiled a concatenated alignment of nuclear and mito- chondrial DNA sequences, comprising representatives of most living and recently extinct species. Our Keywords: analysis confirmed the currently recognised deep split between Macrotis (Thylacomyidae), Chaeropus Marsupial (Chaeropodidae) and all other living bandicoots (Peramelidae). The mainly New Guinean rainforest per- Bandicoot Peramelemorphia amelids were returned as the sister clade of Australian dry-country species. The wholly New Guinean Per- Phylogeny oryctinae was sister to Echymiperinae. -
An Overdue Break-Up of the Genus Pogonomys Milne-Edwards, 1877 (Mammalia: Muridae) Into Two Genera and the Formal Naming of Five Long Overlooked Species
42 Australasian Journal of Herpetology Australasian Journal of Herpetology 49:42-63. Published 6 August 2020. ISSN 1836-5698 (Print) ISSN 1836-5779 (Online) An overdue break-up of the genus Pogonomys Milne-Edwards, 1877 (Mammalia: Muridae) into two genera and the formal naming of five long overlooked species. LSIDURN:LSID:ZOOBANK.ORG:PUB:33BC1FC2-DC2E-49EB-8003-1DD4E3528194 RAYMOND T. HOSER LSIDurn:lsid:zoobank.org:author:F9D74EB5-CFB5-49A0-8C7C-9F993B8504AE 488 Park Road, Park Orchards, Victoria, 3134, Australia. Phone: +61 3 9812 3322 Fax: 9812 3355 E-mail: snakeman (at) snakeman.com.au Received 1 May 2020, Accepted 23 July 2020, Published 6 August 2020. ABSTRACT An audit of all previously named species and synonyms within the putative genus of mainly New Guinean prehensile tailed mice Pogonomys Milne-Edwards, 1877 found a number of distinctive and divergent species that were not yet recognized by science. Five species were recognized by most authorities as of early 2020. A sixth species, Mus mollipilosus Peters and Doria, 1881, is resurrected from the synonymy of Pogonomys macrourus Milne-Edwards, 1877 on the basis of dentition and body form. Five species and two other subspecies are formally named for the first time in this paper, including one newly named species based on a pair of Holocene age upper and lower left molar teeth collected in Irian Jaya. The divergent lineage including P. loriae Thomas, 1897, P. mollipilosus (Peters and Doria, 1881), P. fergussoniensis Laurie, 1952 and four closely related taxa that are newly named are also placed in a newly erected and named genus Macropogonomys gen. -
1994 IUCN Red List of Threatened Animals
The lUCN Species Survival Commission 1994 lUCN Red List of Threatened Animals Compiled by the World Conservation Monitoring Centre PADU - MGs COPY DO NOT REMOVE lUCN The World Conservation Union lo-^2^ 1994 lUCN Red List of Threatened Animals lUCN WORLD CONSERVATION Tile World Conservation Union species susvival commission monitoring centre WWF i Suftanate of Oman 1NYZ5 TTieWlLDUFE CONSERVATION SOCIET'' PEOPLE'S TRISr BirdLife 9h: KX ENIUNGMEDSPEaES INTERNATIONAL fdreningen Chicago Zoulog k.J SnuicTy lUCN - The World Conservation Union lUCN - The World Conservation Union brings together States, government agencies and a diverse range of non-governmental organisations in a unique world partnership: some 770 members in all, spread across 123 countries. - As a union, I UCN exists to serve its members to represent their views on the world stage and to provide them with the concepts, strategies and technical support they need to achieve their goals. Through its six Commissions, lUCN draws together over 5000 expert volunteers in project teams and action groups. A central secretariat coordinates the lUCN Programme and leads initiatives on the conservation and sustainable use of the world's biological diversity and the management of habitats and natural resources, as well as providing a range of services. The Union has helped many countries to prepare National Conservation Strategies, and demonstrates the application of its knowledge through the field projects it supervises. Operations are increasingly decentralised and are carried forward by an expanding network of regional and country offices, located principally in developing countries. I UCN - The World Conservation Union seeks above all to work with its members to achieve development that is sustainable and that provides a lasting Improvement in the quality of life for people all over the world. -
Mammals of the Avon Region
Mammals of the Avon Region By Mandy Bamford, Rowan Inglis and Katie Watson Foreword by Dr. Tony Friend R N V E M E O N G T E O H F T W A E I S L T A E R R N A U S T 1 2 Contents Foreword 6 Introduction 8 Fauna conservation rankings 25 Species name Common name Family Status Page Tachyglossus aculeatus Short-beaked echidna Tachyglossidae not listed 28 Dasyurus geoffroii Chuditch Dasyuridae vulnerable 30 Phascogale calura Red-tailed phascogale Dasyuridae endangered 32 phascogale tapoatafa Brush-tailed phascogale Dasyuridae vulnerable 34 Ningaui yvonnae Southern ningaui Dasyuridae not listed 36 Antechinomys laniger Kultarr Dasyuridae not listed 38 Sminthopsis crassicaudata Fat-tailed dunnart Dasyuridae not listed 40 Sminthopsis dolichura Little long-tailed dunnart Dasyuridae not listed 42 Sminthopsis gilberti Gilbert’s dunnart Dasyuridae not listed 44 Sminthopsis granulipes White-tailed dunnart Dasyuridae not listed 46 Myrmecobius fasciatus Numbat Myrmecobiidae vulnerable 48 Chaeropus ecaudatus Pig-footed bandicoot Peramelinae presumed extinct 50 Isoodon obesulus Quenda Peramelinae priority 5 52 Species name Common name Family Status Page Perameles bougainville Western-barred bandicoot Peramelinae endangered 54 Macrotis lagotis Bilby Peramelinae vulnerable 56 Cercartetus concinnus Western pygmy possum Burramyidae not listed 58 Tarsipes rostratus Honey possum Tarsipedoidea not listed 60 Trichosurus vulpecula Common brushtail possum Phalangeridae not listed 62 Bettongia lesueur Burrowing bettong Potoroidae vulnerable 64 Potorous platyops Broad-faced -
Terrestrial Native Mammals of Western Australia
TERRESTRIALNATIVE MAMMALS OF WESTERNAUSTRALIA On a number of occasionswe have been asked what D as y ce r cus u ist ica ud q-Mul Aara are the marsupialsof W.A. or what is the scientiflcname Anlechinusfla.t,ipes Matdo given to a palticular animal whosecommon name only A n t ec h i nus ap i ca I i s-Dlbbler rs known. Antechinusr osemondae-Little Red Antechinus As a guide,the following list of62 speciesof marsupials A nteclt itus mqcdonneIlens is-Red-eared Antechi nus and 59 speciesof othersis publishedbelow. Antechinus ? b ilar n i-Halney' s Antechinus Antec h in us mqculatrJ-Pismv Antechinus N ingaui r idei-Ride's Nirfaui - MARSUPALIA Ningauirinealvi Ealev's-KimNinsaui Ptaiigole*fuilissima beiiey Planigale Macropodidae Plani gale tenuirostris-Narrow-nosed Planigate Megaleia rufa Red Kangaroo Smi nt hopsis mu rina-Common Dulnart Macropus robustus-Etro Smin t hop[is longicaudat.t-Long-tailed Dunnart M acr opus fu Ii g inos,s-Western Grey Kangaroo Sminthops is cras sicaudat a-F at-tailed Dunnart Macrcpus antilo nus Antilope Kangaroo S-nint hopsi s froggal//- Larapinla Macropu"^agi /rs Sandy Wallaby Stnintllopsirgranuli,oer -Whire-railed Dunnart Macrcpus rirra Brush Wallaby Sninthopsis hir t ipes-Hairy -footed Dunnart M acro ptrs eugenii-T ammar Sminthopsiso oldea-^f r oughton's Dunnart Set oni x brac ltyuru s-Quokka A ntec h inomys lanrger-Wuhl-Wuhl On y ch oga I ea Lng uife r a-Kar r abul M.yr nte c o b ius fasc ialrls-N umbat Ony c hogalea Iunq ta-W \rrur.g Notoryctidae Lagorchest es conspic i Ilat us,Spectacied Hare-Wallaby Notorlctes -
Rodents Bibliography
Calaby’s Rodent Literature Abbott, I.J. (1974). Natural history of Curtis Island, Bass Strait. 5. Birds, with some notes on mammal trapping. Papers and Proceedings of the Royal Society of Tasmania 107: 171–74. General; Rodents Abbott, I. (1978). Seabird islands No. 56 Michaelmas Island, King George Sound, Western Australia. Corella 2: 26–27. (Records rabbit and Rattus fuscipes). General; Rodents; Lagomorphs Abbott, I. (1981). Seabird Islands No. 106 Mondrain Island, Archipelago of the Recherche, Western Australia. Corella 5: 60–61. (Records bush-rat and rock-wallaby). General; Rodents Abbott, I. and Watson, J.R. (1978). The soils, flora, vegetation and vertebrate fauna of Chatham Island, Western Australia. Journal of the Royal Society of Western Australia 60: 65–70. (Only mammal is Rattus fuscipes). General; Rodents Adams, D.B. (1980). Motivational systems of agonistic behaviour in muroid rodents: a comparative review and neural model. Aggressive Behavior 6: 295–346. Rodents Ahern, L.D., Brown, P.R., Robertson, P. and Seebeck, J.H. (1985). Application of a taxon priority system to some Victorian vertebrate fauna. Fisheries and Wildlife Service, Victoria, Arthur Rylah Institute of Environmental Research Technical Report No. 32: 1–48. General; Marsupials; Bats; Rodents; Whales; Land Carnivores Aitken, P. (1968). Observations on Notomys fuscus (Wood Jones) (Muridae-Pseudomyinae) with notes on a new synonym. South Australian Naturalist 43: 37–45. Rodents; Aitken, P.F. (1969). The mammals of the Flinders Ranges. Pp. 255–356 in Corbett, D.W.P. (ed.) The natural history of the Flinders Ranges. Libraries Board of South Australia : Adelaide. (Gives descriptions and notes on the echidna, marsupials, murids, and bats recorded for the Flinders Ranges; also deals with the introduced mammals, including the dingo).