Control of Photosynthetic Sucrose Synthesis by Fructose 2,6- Bisphosphatel I
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Living Cell Cytosol Stability to Segregation and Freezing-Out: Thermodynamic Aspect
1 Living Cell Cytosol Stability to Segregation and Freezing-Out: Thermodynamic aspect Viktor I. Laptev Russian New University, Moscow, Russian Federation The cytosol state in living cell is treated as homogeneous phase equilibrium with a special feature: the pressure of one phase is positive and the pressure of the other is negative. From this point of view the cytosol is neither solution nor gel (or sol as a whole) regardless its components (water and dissolved substances). This is its unique capability for selecting, sorting and transporting reagents to the proper place of the living cell without a so-called “pipeline”. To base this statement the theoretical investigation of the conditions of equilibrium and stability of the medium with alternative-sign pressure is carried out under using the thermodynamic laws and the Gibbs” equilibrium criterium. Keywords: living cellular processes; cytosol; intracellular fluid; cytoplasmic matrix; hyaloplasm matrix; segregation; freezing-out; zero isobare; negative pressure; homogeneous phase equilibrium. I. INTRODUCTION A. Inertial Motion in U,S,V-Space A full description of the thermodynamic state of a medium Cytosol in a living cell (intracellular fluid or cytoplasmic without chemical interactions is given by a relationship matrix, hyaloplasm matrix, aqueous cytoplasm) is a between the internal energy U, entropy S and volume V [5]. combination of the water dissolved substances. It places in the The mathematical procedure for a negative pressure supposes cell between the plasma membrane, the nucleus and a vacuole; using absolute values of the internal energy U and entropy S. it is a medium keeping granular-like and whisker-like The surface φ(U,S,V) = 0 corresponds to the all structures. -
Introduction to the Cell Cell History Cell Structures and Functions
Introduction to the cell cell history cell structures and functions CK-12 Foundation December 16, 2009 CK-12 Foundation is a non-profit organization with a mission to reduce the cost of textbook materials for the K-12 market both in the U.S. and worldwide. Using an open-content, web-based collaborative model termed the “FlexBook,” CK-12 intends to pioneer the generation and distribution of high quality educational content that will serve both as core text as well as provide an adaptive environment for learning. Copyright ©2009 CK-12 Foundation This work is licensed under the Creative Commons Attribution-Share Alike 3.0 United States License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/us/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA. Contents 1 Cell structure and function dec 16 5 1.1 Lesson 3.1: Introduction to Cells .................................. 5 3 www.ck12.org www.ck12.org 4 Chapter 1 Cell structure and function dec 16 1.1 Lesson 3.1: Introduction to Cells Lesson Objectives • Identify the scientists that first observed cells. • Outline the importance of microscopes in the discovery of cells. • Summarize what the cell theory proposes. • Identify the limitations on cell size. • Identify the four parts common to all cells. • Compare prokaryotic and eukaryotic cells. Introduction Knowing the make up of cells and how cells work is necessary to all of the biological sciences. Learning about the similarities and differences between cell types is particularly important to the fields of cell biology and molecular biology. -
Carbohydrates: Structure and Function
CARBOHYDRATES: STRUCTURE AND FUNCTION Color index: . Very important . Extra Information. “ STOP SAYING I WISH, START SAYING I WILL” 435 Biochemistry Team *هذا العمل ﻻ يغني عن المصدر المذاكرة الرئيسي • The structure of carbohydrates of physiological significance. • The main role of carbohydrates in providing and storing of energy. • The structure and function of glycosaminoglycans. OBJECTIVES: 435 Biochemistry Team extra information that might help you 1-synovial fluid: - It is a viscous, non-Newtonian fluid found in the cavities of synovial joints. - the principal role of synovial fluid is to reduce friction between the articular cartilage of synovial joints during movement O 2- aldehyde = terminal carbonyl group (RCHO) R H 3- ketone = carbonyl group within (inside) the compound (RCOR’) 435 Biochemistry Team the most abundant organic molecules in nature (CH2O)n Carbohydrates Formula *hydrate of carbon* Function 1-provides important part of energy Diseases caused by disorders of in diet . 2-Acts as the storage form of energy carbohydrate metabolism in the body 3-structural component of cell membrane. 1-Diabetesmellitus. 2-Galactosemia. 3-Glycogen storage disease. 4-Lactoseintolerance. 435 Biochemistry Team Classification of carbohydrates monosaccharides disaccharides oligosaccharides polysaccharides simple sugar Two monosaccharides 3-10 sugar units units more than 10 sugar units Joining of 2 monosaccharides No. of carbon atoms Type of carbonyl by O-glycosidic bond: they contain group they contain - Maltose (α-1, 4)= glucose + glucose -Sucrose (α-1,2)= glucose + fructose - Lactose (β-1,4)= glucose+ galactose Homopolysaccharides Heteropolysaccharides Ketone or aldehyde Homo= same type of sugars Hetero= different types Ketose aldose of sugars branched unBranched -Example: - Contains: - Contains: Examples: aldehyde group glycosaminoglycans ketone group. -
VDAC: the Channel at the Interface Between Mitochondria and the Cytosol
Molecular and Cellular Biochemistry 256/257: 107–115, 2004. © 2004 Kluwer Academic Publishers. Printed in the Netherlands. 107 VDAC: The channel at the interface between mitochondria and the cytosol Marco Colombini Department of Biology, University of Maryland, MD, USA Abstract The mitochondrial outer membrane is not just a barrier but a site of regulation of mitochondrial function. The VDAC family of proteins are the major pathways for metabolite flux through the outer membrane. These can be regulated in a variety of ways and the integration of these regulatory inputs allows mitochondrial metabolism to be adjusted to changing cellular conditions. This includes total blockage of the flux of anionic metabolites leading to permeabilization of the outer membrane to small proteins followed by apoptotic cell death. (Mol Cell Biochem 256/257: 107–115, 2004) Key words: mitochondrion, outer membrane, apoptosis, isoforms, metabolism Introduction author’s view, see also ref. [6] for an alternative view). In- formation on VDAC can also be found on the VDAC web Mitochondria live, function, and reproduce in a very rich and page: www.life.umd.edu/vdac. friendly environment, the cytosol of the eukaryotic cell. Just as the plasma membrane is the interface between the inter- stitial space and the cytosol, so the mitochondrial outer The VDAC channels: Conservation and membrane is the interface between the cytosol and the mi- tochondrial spaces. Both separate the cell or the organelle specialization from its environment and both act as selective barriers to the entry and exit of matter. These membranes are also logical VDAC channels (Fig. 1) from a wide variety of sources (plants sites for control. -
Structural Features
1 Structural features As defined by the International Union of Pure and Applied Chemistry gly- cans are structures of multiple monosaccharides linked through glycosidic bonds. The terms sugar and saccharide are synonyms, depending on your preference for Arabic (“sukkar”) or Greek (“sakkēaron”). Saccharide is the root for monosaccha- rides (a single carbohydrate unit), oligosaccharides (3 to 20 units) and polysac- charides (large polymers of more than 20 units). Carbohydrates follow the basic formula (CH2O)N>2. Glycolaldehyde (CH2O)2 would be the simplest member of the family if molecules of two C-atoms were not excluded from the biochemical repertoire. Glycolaldehyde has been found in space in cosmic dust surrounding star-forming regions of the Milky Way galaxy. Glycolaldehyde is a precursor of several organic molecules. For example, reaction of glycolaldehyde with propenal, another interstellar molecule, yields ribose, a carbohydrate that is also the backbone of nucleic acids. Figure 1 – The Rho Ophiuchi star-forming region is shown in infrared light as captured by NASA’s Wide-field Infrared Explorer. Glycolaldehyde was identified in the gas surrounding the star-forming region IRAS 16293-2422, which is is the red object in the centre of the marked square. This star-forming region is 26’000 light-years away from Earth. Glycolaldehyde can react with propenal to form ribose. Image source: www.eso.org/public/images/eso1234a/ Beginning the count at three carbon atoms, glyceraldehyde and dihydroxy- acetone share the common chemical formula (CH2O)3 and represent the smallest carbohydrates. As their names imply, glyceraldehyde has an aldehyde group (at C1) and dihydoxyacetone a carbonyl group (at C2). -
A Physicochemical Perspective of Aging from Single-Cell Analysis Of
TOOLS AND RESOURCES A physicochemical perspective of aging from single-cell analysis of pH, macromolecular and organellar crowding in yeast Sara N Mouton1, David J Thaller2, Matthew M Crane3, Irina L Rempel1, Owen T Terpstra1, Anton Steen1, Matt Kaeberlein3, C Patrick Lusk2, Arnold J Boersma4*, Liesbeth M Veenhoff1* 1European Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Groningen, Netherlands; 2Department of Cell Biology, Yale School of Medicine, New Haven, United States; 3Department of Pathology, School of Medicine, University of Washington, Seattle, United States; 4DWI-Leibniz Institute for Interactive Materials, Aachen, Germany Abstract Cellular aging is a multifactorial process that is characterized by a decline in homeostatic capacity, best described at the molecular level. Physicochemical properties such as pH and macromolecular crowding are essential to all molecular processes in cells and require maintenance. Whether a drift in physicochemical properties contributes to the overall decline of homeostasis in aging is not known. Here, we show that the cytosol of yeast cells acidifies modestly in early aging and sharply after senescence. Using a macromolecular crowding sensor optimized for long-term FRET measurements, we show that crowding is rather stable and that the stability of crowding is a stronger predictor for lifespan than the absolute crowding levels. Additionally, in aged cells, we observe drastic changes in organellar volume, leading to crowding on the *For correspondence: micrometer scale, which we term organellar crowding. Our measurements provide an initial [email protected] framework of physicochemical parameters of replicatively aged yeast cells. (AJB); [email protected] (LMV) Competing interest: See Introduction page 19 Cellular aging is a process of progressive decline in homeostatic capacity (Gems and Partridge, Funding: See page 19 2013; Kirkwood, 2005). -
Download Product Insert (PDF)
PRODUCT INFORMATION D-(+)-Glyceraldehyde Item No. 16493 CAS Registry No.: 453-17-8 Formal Name: (2R)-2,3-dihydroxy-propanal Synonyms: D-Glyceraldehyde, D-Glycerose, NSC 91534 MF: C H O CHO 3 6 3 HO FW: 90.1 Purity: ≥85% OH Supplied as: A neat oil Storage: -20°C Stability: ≥2 years Information represents the product specifications. Batch specific analytical results are provided on each certificate of analysis. Laboratory Procedures D-(+)-Glyceraldehyde is supplied as a neat oil. A stock solution may be made by dissolving the D-(+)-glyceraldehyde in the solvent of choice. D-(+)-Glyceraldehyde is soluble in organic solvents such as ethanol, DMSO, and dimethyl formamide, which should be purged with an inert gas. The solubility of D-(+)-glyceraldehyde in these solvents is approximately 30 mg/ml. Further dilutions of the stock solution into aqueous buffers or isotonic saline should be made prior to performing biological experiments. Ensure that the residual amount of organic solvent is insignificant, since organic solvents may have physiological effects at low concentrations. Organic solvent-free aqueous solutions of D-(+)-glyceraldehyde can be prepared by directly dissolving the neat oil in aqueous buffers. The solubility of D-(+)-glyceraldehyde in PBS, pH 7.2, is approximately 10 mg/ml. We do not recommend storing the aqueous solution for more than one day. Description D-(+)-Glyceraldehyde is an intermediate in carbohydrate metabolism. It is phosphorylated by triose kinase to produce D-glyceraldehyde 3-phosphate, an intermediate in glycolysis, gluconeogenesis, photosynthesis, and other metabolic pathways.1-3 References 1. Ronimus, R.S. and Morgan, H.W. -
Nucleolus: a Central Hub for Nuclear Functions Olga Iarovaia, Elizaveta Minina, Eugene Sheval, Daria Onichtchouk, Svetlana Dokudovskaya, Sergey Razin, Yegor Vassetzky
Nucleolus: A Central Hub for Nuclear Functions Olga Iarovaia, Elizaveta Minina, Eugene Sheval, Daria Onichtchouk, Svetlana Dokudovskaya, Sergey Razin, Yegor Vassetzky To cite this version: Olga Iarovaia, Elizaveta Minina, Eugene Sheval, Daria Onichtchouk, Svetlana Dokudovskaya, et al.. Nucleolus: A Central Hub for Nuclear Functions. Trends in Cell Biology, Elsevier, 2019, 29 (8), pp.647-659. 10.1016/j.tcb.2019.04.003. hal-02322927 HAL Id: hal-02322927 https://hal.archives-ouvertes.fr/hal-02322927 Submitted on 18 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Nucleolus: A Central Hub for Nuclear Functions Olga Iarovaia, Elizaveta Minina, Eugene Sheval, Daria Onichtchouk, Svetlana Dokudovskaya, Sergey Razin, Yegor Vassetzky To cite this version: Olga Iarovaia, Elizaveta Minina, Eugene Sheval, Daria Onichtchouk, Svetlana Dokudovskaya, et al.. Nucleolus: A Central Hub for Nuclear Functions. Trends in Cell Biology, Elsevier, 2019, 29 (8), pp.647-659. 10.1016/j.tcb.2019.04.003. hal-02322927 HAL Id: hal-02322927 https://hal.archives-ouvertes.fr/hal-02322927 Submitted on 18 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. -
Nanocarriers for Protein Delivery to the Cytosol: Assessing the Endosomal Escape of Poly(Lactide-Co-Glycolide)-Poly(Ethylene Imine) Nanoparticles
nanomaterials Article Nanocarriers for Protein Delivery to the Cytosol: Assessing the Endosomal Escape of Poly(Lactide-co-Glycolide)-Poly(Ethylene Imine) Nanoparticles Marianna Galliani 1,2,* , Chiara Tremolanti 3,4 and Giovanni Signore 1,2,5,* 1 Center of Nanotechnology Innovation @NEST, Istituto Italiano di Tecnologia, 56127 Pisa, Italy 2 NEST, Scuola Normale Superiore, 56127 Pisa, Italy 3 Department of Pharmacy, University of Pisa, 56126 Pisa, Italy; [email protected] 4 Istituto di Fisiologia Clinica, National Research Council, 56124 Pisa, Italy 5 Fondazione Pisana per la Scienza ONLUS, 56121 Pisa, Italy * Correspondence: [email protected] (M.G.); [email protected] (G.S.) Received: 15 March 2019; Accepted: 21 April 2019; Published: 23 April 2019 Abstract: Therapeutic proteins and enzymes are a group of interesting candidates for the treatment of numerous diseases, but they often require a carrier to avoid degradation and rapid clearance in vivo. To this end, organic nanoparticles (NPs) represent an excellent choice due to their biocompatibility, and cross-linked enzyme aggregates (CLEAs)-loaded poly (lactide-co-glycolide) (PLGA) NPs have recently attracted attention as versatile tools for targeted enzyme delivery. However, PLGA NPs are taken up by cells via endocytosis and are typically trafficked into lysosomes, while many therapeutic proteins and enzymes should reach the cellular cytosol to perform their activity. Here, we designed a CLEAs-based system implemented with a cationic endosomal escape agent (poly(ethylene imine), PEI) to extend the use of CLEA NPs also to cytosolic enzymes. We demonstrated that our system can deliver protein payloads at cytoplasm level by two different mechanisms: Endosomal escape and direct translocation. -
Roles of Cytosol and Cytoplasmic Particles in Nuclear Envelope Assembly and Sperm Pronuclear Formation in Cell-Free Preparations from Amphibian Eggs
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central Roles of Cytosol and Cytoplasmic Particles in Nuclear Envelope Assembly and Sperm Pronuclear Formation in Cell-free Preparations from Amphibian Eggs MANFRED J . LOHKA and YOSHIO MASUI Department of Zoology, University of Toronto, Toronto, Ontario, Canada M5S 1A1 . Dr. Lohka's present address is Department of Pharmacology, University of Colorado School of Medicine, Denver, Colorado 80262 . ABSTRACT A cell-free cytoplasmic preparation from activated Rana pipiens eggs could induce in demembranated Xenopus laevis sperm nuclei morphological changes similar to those seen during pronuclear formation in intact eggs . The condensed sperm chromatin underwent an initial rapid, but limited, dispersion . A nuclear envelope formed around the dispersed chro- matin and the nuclei enlarged . The subcellular distribution of the components required for these changes was examined by separating the preparations into soluble (cytosol) and partic- ulate fractions by centrifugation at 150,000 g for 2 h . Sperm chromatin was incubated with the cytosol or with the particulate material after it had been resuspended in either the cytosol, heat-treated (60 or 100°C) cytosol or buffer . We found that the limited dispersion of chromatin occurred in each of these ooplasmic fractions, but not in the buffer alone . Nuclear envelope assembly required the presence of both untreated cytosol and particulate material . Ultrastruc- tural examination of the sperm chromatin during incubation in the preparations showed that membrane vesicles of -200 nm in diameter, found in the particulate fraction, flattened and fused together to contribute the membranous components of the nuclear envelope . -
Membrane Structure and Function
Chapter 7 Membrane Structure and Function Lecture Outline Overview: Life at the Edge • The plasma membrane separates the living cell from its surroundings. • This thin barrier, 8 nm thick, controls traffic into and out of the cell. • Like all biological membranes, the plasma membrane is selectively permeable, allowing some substances to cross more easily than others. • The formation of a membrane that encloses a solution different from the surrounding solution while still permitting the uptake of nutrients and the elimination of waste products was a key event in the evolution of life. • The ability of the cell to discriminate in its chemical exchanges with its environment is fundamental to life. • It is the plasma membrane and its component molecules that make this selectivity possible. Concept 7.1 Cellular membranes are fluid mosaics of lipids and proteins. • The main macromolecules in membranes are lipids and proteins, but carbohydrates are also important. • The most abundant lipids are phospholipids. • Phospholipids and most other membrane constituents are amphipathic molecules, which have both hydrophobic and hydrophilic regions. Membrane models have evolved to fit new data. • The arrangement of phospholipids and proteins in biological membranes is described by the fluid mosaic model. • In this model, the membrane is a fluid structure with a “mosaic” of various proteins embedded in or attached to a double layer (bilayer) of phospholipids. • Models of membranes were developed long before membranes were first seen with electron microscopes in the 1950s. • In 1915, membranes isolated from red blood cells were chemically analyzed and found to be composed of lipids and proteins. • In 1925, E. -
Carbohydrates
Carbohydrates Carbohydrates Copyright © 2007 by Pearson Education, Inc. Publishing as Benjamin Cummings 1 Carbohydrates Carbohydrates are ▪ A major source of energy from our diet. ▪ Composed of the elements C, H, and O. ▪ Also called saccharides, which means “sugars.” Copyright © 2007 by Pearson Education, Inc. Publishing as Benjamin Cummings 2 Carbohydrates Carbohydrates ▪ Are produced by photosynthesis in plants. ▪ Such as glucose are synthesized in plants from CO2, H2O, and energy from the sun. ▪ Are oxidized in living cells (respiration) to produce CO2, H2O, and energy. Copyright © 2007 by Pearson Education, Inc Publishing as Benjamin Cummings 3 ▪ Carbohydrates – polyhydroxyaldehydes or polyhydroxy-ketones of formula (CH2O)n, or compounds that can be hydrolyzed to them. (sugars or saccharides) ▪ Monosaccharides – carbohydrates that cannot be hydrolyzed to simpler carbohydrates; eg. Glucose or fructose. ▪ Disaccharides – carbohydrates that can be hydrolyzed into two monosaccharide units; eg. Sucrose, which is hydrolyzed into glucose and fructose. ▪ Oligosaccharides – carbohydrates that can be hydrolyzed into a few monosaccharide units. ▪ Polysaccharides – carbohydrates that are are polymeric sugars; eg Starch or cellulose. 4 ▪ Aldose – polyhydroxyaldehyde, eg glucose ▪ Ketose – polyhydroxyketone, eg fructose ▪ Triose, tetrose, pentose, hexose, etc. – carbohydrates that contain three, four, five, six, etc. carbons per molecule (usually five or six); eg. Aldohexose, ketopentose, etc. ▪ Reducing sugar – a carbohydrate that is oxidized by Tollen’s, Fehling’s or Benedict’s solution. ▪ Tollen’s: Ag+ → Ag (silver mirror) ▪ Fehling’s or Benedict’s: Cu2+ (blue) → Cu1+ (red ppt) ▪ These are reactions of aldehydes and alpha-hydroxyketones. ▪ All monosaccharides (both aldoses and ketoses) and most* disaccharides are reducing sugars. ▪ *Sucrose (table sugar), a disaccharide, is not a reducing sugar.