Chromosomal)Instability)In)Glioma)Stem)Cell) Lines)From)Glioblastoma)Multiforme:)) Implications)For)New)Therapeutic)Strategies) ' ' ' ' ' '
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SCUOLA'DI'DOTTORATO' UNIVERSITÀ'DEGLI'STUDI'DI'MILANO2BICOCCA' ' ' School'of'Medicine'and'Surgery' ' PhD'program'in'Neuroscience'' Cycle'XXIX' ' ' ' ' ' ' ' CHROMOSOMAL)INSTABILITY)IN)GLIOMA)STEM)CELL) LINES)FROM)GLIOBLASTOMA)MULTIFORME:)) IMPLICATIONS)FOR)NEW)THERAPEUTIC)STRATEGIES) ' ' ' ' ' ' Surname:'CILIBRASI''''Name:'CHIARA' Registration'number:'709467' ' ' ' Tutor:'Dr.'ANGELA'BENTIVEGNA' Coordinator:'Prof.'GUIDO'ANGELO'CAVALETTI' ' ' ' ' ' Academic'Year'2015/2016 TABLE)OF)CONTENT) Summary)...............................................................................................................)IV)) Abbreviations)........................................................................................................)VI)) Figures)...................................................................................................................)IX)) Tables)....................................................................................................................)XI) ' CHapter)1:)Introduction).........................................................................................)1) ' 1.1'Gliomas'..............................................................................................................'2' 1.2'Glioblastoma'multiforme'....................................................................................'5' 1.2.1'Glioblastoma'standard'of'care'.................................................................'12' 1.3'Cancer'stem'cells'theory'.................................................................................'16' 1.3.1'Glioma'stem'cells'.....................................................................................'18' 1.3.1.1'Glioma'stem'cells'markers'................................................................'19' 1.3.1.2'Glioma'stem'cells'implicated'signalling'pathways'............................'22' 1.3.1.3'Glioma'stem'cells'microenvironment'................................................'24' 1.3.1.4'Glioma'stem'cells2dependent'therapeutic'resistance'.......................'28' 1.4'Symmetric'and'asymmetric'cell'division'..........................................................'31' 1.4.1'Symmetric'and'asymmetric'cell'division'in'D.Melanogaster'stem2like'cells' '..........................................................................................................................'31' 1.4.2'Cell'division'mode'in'mammalian'neural'stem'cells''................................'35' 1.4.3'Evidence'of'GSCs'division'mode''............................................................'37' 1.5'Chromosomal'instability'(CIN)'.........................................................................'40' 1.5.1'Methods'for'the'analysis'of'CIN'...............................................................'41' 1.5.2'Causes'of'CIN'..........................................................................................'43' 1.5.3'CIN'and'tumorigenesis'.............................................................................'50' 1.5.3.1'Aurora'kinases'and'cancer'...............................................................'51' 1.6'CIN'as'a'therapeutic'target'..............................................................................'57' 1.6.1'Aurora'kinases'inhibitors'..........................................................................'58' 1.6.1.1'Danusertib'.........................................................................................'59' ' CHapter)2:)Aim)of)the)work).................................................................................)66) ' CHapter)3:)Effect)of)Aurora)kinases)inHibition)on)GSCs).................................)68) Materials)and)Methods)........................................................................................)69) ' 3.1'Materials'..........................................................................................................'70' 3.1.1'Cell'lines'...................................................................................................'70' 3.1.2'Drugs'........................................................................................................'70' 3.1.3'Solutions'and'Buffers'...............................................................................'71' 3.1.4'Other'Reagents'........................................................................................'71' 3.2'Methods'...........................................................................................................'75' 3.2.1'Cell'culture'conditions'..............................................................................'75' 3.2.2'RNA'extraction'.........................................................................................'75' 3.2.3'TaqMan'gene'expression'assay'..............................................................'75' I' 3.2.4'MTT'assay'................................................................................................'76' 3.2.5'Trypan'blue'dye'exclusion'assay'.............................................................'76' 3.2.6'Conventional'cytogenetics'.......................................................................'77' 3.2.7'Fluorescence'in.situ'hybridization'............................................................'77' 3.2.8'Neurosphere'formation'assay'..................................................................'78' 3.2.9'Cell'morphology'analysis'.........................................................................'78' 3.2.10'Giemsa'staining'......................................................................................'78' 3.2.11'Western'Blot'...........................................................................................'79' 3.2.12'Cell'cycle'profile'analysis'.......................................................................'79' 3.2.13'Immunofluorescence'..............................................................................'80' 3.2.14'Live'cell'imaging'.....................................................................................'80' 3.2.15'DNA'extraction'.......................................................................................'81' 3.2.16'TP53'Sanger'sequencing'.......................................................................'81' 3.2.17'Microsatellites'analysis'...........................................................................'82' 3.2.18'DNA'integrity'evaluation'.........................................................................'82' 3.2.19'β'galactosidase'staining'.........................................................................'83' 3.2.20''Statistics'................................................................................................'83' Results)..................................................................................................................)84) ' 3.3'Preliminary'results:'GSCs'are'characterized'by'enhanced'CIN'and'AURK' CNAs'.....................................................................................................................'85' 3.4'Aurora'kinases'A'and'B'are'overexpressed'in'GSC'lines'...............................'86' 3.5'Aurora'kinases'protein'levels'...........................................................................'87' 3.6'Sensitivity'and'resistance'to'Danusertib'measured'by'metabolic'activity'........'88' 3.7'Danusertib'effect'on'GSCs'viability'.................................................................'90' 3.8'Danusertib'induces'strong'changes'in'cell'and'nuclei'morphology'in'sensitive' GSCs'.....................................................................................................................'91' 3.9'Danusertib'induces'ploidy'increase'in'GSC'lines'............................................'93' 3.10'Danusertib'effect'on'GSCs'proliferation'........................................................'95' 3.11'Danusertib'effect'on'GSCs'clonogenic'potential'...........................................'96' 3.12'Danusertib'induces'a'decrease'in'phospho2Aurora'kinases'levels'in'GSC' lines'.......................................................................................................................'97' 3.13'Live'imaging'analysis'of'GSCs'fate'after'Danusertib'exposure'.....................'98' 3.14'Different'sensitivity'of'GSCs'to'Aurora'inhibition'is'not'dependent'on'TP53' status'...................................................................................................................'100' 3.15'TP53'loss'of'heterozygosity'(LOH)'analysis'................................................'102' 3.16'Sensitive'and'resistant'GSCs'have'a'different'cell'cycle'distribution'..........'103' 3.17'Danusertib'does'not'induce'any'DNA'fragmentation'...................................'106' 3.18'Aurora'inhibition'induces'an'increase'in'senescence'in'sensitive'GSCs'....'106' 3.19'Multiple'rounds'of'Aurora'inhibition'induce'an'increase'in'ploidy'and' senescence'also'in'resistant'GSCs'.....................................................................'107' ' CHapter)4:)CHaracterization)of)GSCs)division)mode).....................................)110) Materials)and)Methods)......................................................................................)111) ' 4.1'Materials'........................................................................................................'112' 4.1.1'Cell'lines'.................................................................................................'112' 4.1.2'Solutions'and'Buffers'.............................................................................'112'