Non-Terpenoid Biotransformations by Mucor Species
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Taxonomy and Epidemiology of <I>Mucor Irregularis</I> , Agent Of
UvA-DARE (Digital Academic Repository) Taxonomy and epidemiology Mucor irregularis, agent of chronic cutaneous mucormycosis Lu, X.L.; Najafzadeh, M.J.; Dolatabadi, S.; Ran, Y.P.; Gerrits van den Ende, A.H.G.; Shen, Y.N.; Li, C.Y.; Xi, L.Y.; Hao, F.; Zhang, Q.Q.; Li, R.Y.; Hu, Z.M.; Lu, G.; Wang, J.J.; Drogari- Apiranthitou, M.; Klaassen, C.; Meis, J.F.; Hagen, F.; Liu, W.D.; de Hoog, G.S. DOI 10.3767/003158513X665539 Publication date 2013 Document Version Final published version Published in Persoonia - Molecular Phylogeny and Evolution of Fungi Link to publication Citation for published version (APA): Lu, X. L., Najafzadeh, M. J., Dolatabadi, S., Ran, Y. P., Gerrits van den Ende, A. H. G., Shen, Y. N., Li, C. Y., Xi, L. Y., Hao, F., Zhang, Q. Q., Li, R. Y., Hu, Z. M., Lu, G., Wang, J. J., Drogari-Apiranthitou, M., Klaassen, C., Meis, J. F., Hagen, F., Liu, W. D., & de Hoog, G. S. (2013). Taxonomy and epidemiology Mucor irregularis, agent of chronic cutaneous mucormycosis. Persoonia - Molecular Phylogeny and Evolution of Fungi, 30, 48-56. https://doi.org/10.3767/003158513X665539 General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. -
<I>Mucorales</I>
Persoonia 30, 2013: 57–76 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158513X666259 The family structure of the Mucorales: a synoptic revision based on comprehensive multigene-genealogies K. Hoffmann1,2, J. Pawłowska3, G. Walther1,2,4, M. Wrzosek3, G.S. de Hoog4, G.L. Benny5*, P.M. Kirk6*, K. Voigt1,2* Key words Abstract The Mucorales (Mucoromycotina) are one of the most ancient groups of fungi comprising ubiquitous, mostly saprotrophic organisms. The first comprehensive molecular studies 11 yr ago revealed the traditional Mucorales classification scheme, mainly based on morphology, as highly artificial. Since then only single clades have been families investigated in detail but a robust classification of the higher levels based on DNA data has not been published phylogeny yet. Therefore we provide a classification based on a phylogenetic analysis of four molecular markers including the large and the small subunit of the ribosomal DNA, the partial actin gene and the partial gene for the translation elongation factor 1-alpha. The dataset comprises 201 isolates in 103 species and represents about one half of the currently accepted species in this order. Previous family concepts are reviewed and the family structure inferred from the multilocus phylogeny is introduced and discussed. Main differences between the current classification and preceding concepts affects the existing families Lichtheimiaceae and Cunninghamellaceae, as well as the genera Backusella and Lentamyces which recently obtained the status of families along with the Rhizopodaceae comprising Rhizopus, Sporodiniella and Syzygites. Compensatory base change analyses in the Lichtheimiaceae confirmed the lower level classification of Lichtheimia and Rhizomucor while genera such as Circinella or Syncephalastrum completely lacked compensatory base changes. -
Molecular Identification of Fungi
Molecular Identification of Fungi Youssuf Gherbawy l Kerstin Voigt Editors Molecular Identification of Fungi Editors Prof. Dr. Youssuf Gherbawy Dr. Kerstin Voigt South Valley University University of Jena Faculty of Science School of Biology and Pharmacy Department of Botany Institute of Microbiology 83523 Qena, Egypt Neugasse 25 [email protected] 07743 Jena, Germany [email protected] ISBN 978-3-642-05041-1 e-ISBN 978-3-642-05042-8 DOI 10.1007/978-3-642-05042-8 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2009938949 # Springer-Verlag Berlin Heidelberg 2010 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: WMXDesign GmbH, Heidelberg, Germany, kindly supported by ‘leopardy.com’ Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Dedicated to Prof. Lajos Ferenczy (1930–2004) microbiologist, mycologist and member of the Hungarian Academy of Sciences, one of the most outstanding Hungarian biologists of the twentieth century Preface Fungi comprise a vast variety of microorganisms and are numerically among the most abundant eukaryotes on Earth’s biosphere. -
Thesis FINAL PRINT
Preface This study was conducted at the Department of Chemistry, Biotechnology and Food Science (IKBM), Norwegian University of Life Sciences (UMB) during November 2009 to November 2010. My supervisors were Professor Dr Arne Tronsmo and PhD student Md. Hafizur Rahman, Department of IKBM, UMB. I express my sincere appreciation and gratitude to Professor Arne Tronsmo and Dr. Linda Gordon Hjeljord for their dynamic guidance throughout the period of the study, constant encouragement, constructive criticism and valuable suggestion during preparation of the thesis. I also want to thank Md. Hafizur Rahman for his guidance during my research work. Moreover I express my sincere gratitude to Grethe Kobro and Else Maria Aasen and all other staffs and workers at IKBM, UMB for their helpful co-operation to complete the research work in the laboratory. Last but not the least; I feel the heartiest indebtedness to Sabine and my family members for their patient inspirations, sacrifices and never ending encouragement. Ås, January 2011 Latifur Rahman Shovan i Abstract This thesis has been focused on methods to control diseases caused by Botrytis cinerea. B. cinerea causes grey mould disease of strawberry and chickpea, as well as many other plants. The fungal isolates used were isolated from chickpea leaf (Gazipur, Bangladesh) or obtained from the Norwegian culture collections of Bioforsk (Ås) and IKBM (UMB). Both morphological and molecular characterization helped to identify the fungal isolates as Botrytis cinerea (B. cinerea 101 and B. cinerea-BD), Trichoderma atroviride, T. asperellum Alternaria brassicicola, and Mucor piriformis. The identity of one fungal isolate, which was obtained from the culture collection of Bioforsk under the name Microdochium majus, could not be confirmed in this study. -
Coprophilous Fungal Community of Wild Rabbit in a Park of a Hospital (Chile): a Taxonomic Approach
Boletín Micológico Vol. 21 : 1 - 17 2006 COPROPHILOUS FUNGAL COMMUNITY OF WILD RABBIT IN A PARK OF A HOSPITAL (CHILE): A TAXONOMIC APPROACH (Comunidades fúngicas coprófilas de conejos silvestres en un parque de un Hospital (Chile): un enfoque taxonómico) Eduardo Piontelli, L, Rodrigo Cruz, C & M. Alicia Toro .S.M. Universidad de Valparaíso, Escuela de Medicina Cátedra de micología, Casilla 92 V Valparaíso, Chile. e-mail <eduardo.piontelli@ uv.cl > Key words: Coprophilous microfungi,wild rabbit, hospital zone, Chile. Palabras clave: Microhongos coprófilos, conejos silvestres, zona de hospital, Chile ABSTRACT RESUMEN During year 2005-through 2006 a study on copro- Durante los años 2005-2006 se efectuó un estudio philous fungal communities present in wild rabbit dung de las comunidades fúngicas coprófilos en excementos de was carried out in the park of a regional hospital (V conejos silvestres en un parque de un hospital regional Region, Chile), 21 samples in seven months under two (V Región, Chile), colectándose 21 muestras en 7 meses seasonable periods (cold and warm) being collected. en 2 períodos estacionales (fríos y cálidos). Un total de Sixty species and 44 genera as a total were recorded in 60 especies y 44 géneros fueron detectados en el período the sampling period, 46 species in warm periods and 39 de muestreo, 46 especies en los períodos cálidos y 39 en in the cold ones. Major groups were arranged as follows: los fríos. La distribución de los grandes grupos fue: Zygomycota (11,6 %), Ascomycota (50 %), associated Zygomycota(11,6 %), Ascomycota (50 %), géneros mitos- mitosporic genera (36,8 %) and Basidiomycota (1,6 %). -
BRIEF NOTE Phenotypic Drug Adaptation in Mucor
EXI'IlItIMEN1AL MYCOLOGY 12, 284-2HH (lYHH) 6083 * BRIEF NOTE Phenotypic Drug Adaptation in Mucor racemosus: Constitutively Adapted and Nonadaptive Mutants JULIUS PETERSI.~ AND TIMOTHY D. LEATHERS' DcparfltU"11 of Microbiolof.:Y alld Molecular G('lIf.'fk.~. Culij"(l/'flia CO/lq.:l' (~r Aft<di<'illl'. Ullh'l'rsiry o[Ca/ijim,j{I. Jl'l'ine. Ca/(fomillY27J7 Accepted for publication December 6. 19B7 PETERS, J.. AND LEATHERS. T. D. 1988. Phenotypic drug adaptiltion in Mucor 1'(1C('r1//lSIf5: Con· stilulively adapted and nonadaptive mutants. Experimelllt1J A-fyrolo~y. 12, 284-2HK. WilLi·type Mucor racemoSliS acquires phenotypic resistance to cycioheximiLic after a characteristic lug peri~ od. Adapted culturcs are cross·resislant to the unrelalcd drugs trichndcrmin and amphotericin B. Mutants were isolated as either constitutively resistant (COR mut;.mtsl or nonlldaptive (NAD mutants) to cycloheximide. Mutant COR 2A was constitutively resislant 10 cycloheximide <.llone. and <.ldapted normally to trichodermin and amphotericin B. Mulant COR JA was cunstitutivdy resistant to both cycloheximide and lrichodermin. and had partially induced resi"tance 10 ampho· tericin B. Mutant NAD 67 was also pleiolropic. as it was unable 10 adilpt to any llf lhcse drugs. Phenotypic drug adaptation in M. racellfOSIiS thus appears to involve bOlh general and l.1rug·"pecific components. 1" 191\11 AC:;ldtmic: Prts~. Inc:. INDEX DESCRIPTORS: drug resistance: phenotypic adaptation: Mucor ran'/IIo.Hls: cycloheximide: trichmlt:rmin: amphotericin B; antibiotics; fungicides. Phenotypic adaptation to antifungal coordinately involves the entire fungal pop agents has been described for a wide vari ulation (Sypherd el al., 1979). For similar ety of fungi. -
<I>Mucor Hiemalis</I>
MYCOTAXON Volume 111, pp. 75–85 January–March 2010 Taxonomic position of Mucor hiemalis f. luteus J. Budziszewska, J. Piątkowska & M. Wrzosek [email protected] Department of Systematics and Plant Geography, University of Warsaw al. Ujazdowskie 4, 00-478 Warsaw, Poland Abstract – The taxonomic position of isolates described by Schipper in 1973 as Mucor hiemalis f. luteus, nom. inval., was reevaluated using morphological and molecular data. Based on these data, we propose to validate this taxon at specific rank, as M. luteus. A complete taxonomic description is given and a diagnostic signature sequence is indicated. Key words – Mucorales, endophytes, phylogeny, rhizoids Introduction Mucor hiemalis Wehmer 1903 is the most common and the most variable species within this genus (Schipper 1973). Representatives of this species are frequent soil-borne fungi but they can also be isolated as saprotrophs or parasites from plant material and animals (Costa et al. 1990). Schipper (1973) reexamined the M. hiemalis complex and described M. hiemalis as one species with four forms: M. hiemalis f. corticola (Hagem) Schipper 1973, M. hiemalis Wehmer 1903 f. hiemalis, M. hiemalis f. luteus (Linnem.) Schipper 1973, and M. hiemalis f. silvaticus (Hagem) Schipper 1973. Although f. luteus is invalid because it lacks a Latin diagnosis (McNeill et al. 2006: Art. 36.1), this name is commonly used (Costa et al. 1990). The taxon has also been treated at specific rank (e.g. Mehorta et al. 1966, Zycha et al. 1969, Pei 2000), either as M. luteus Linnem. 1936 (nom. inval.; McNeill et al. 2006: Art. 36.1) or as M. -
European Journal of Plant Pathology
European Journal of Plant Pathology Antifungal effect of chito-oligosaccharides with different degrees of polymerization --Manuscript Draft-- Manuscript Number: EJPP-D-14-00032R2 Full Title: Antifungal effect of chito-oligosaccharides with different degrees of polymerization Article Type: Original Research (full papers) Keywords: Botrytis cinerea; Mucor piriformis; Chitosan; chito-oligosaccharides (CHOS); antifungal; Plant protection Corresponding Author: Morten Sørlie, PhD Aas, NORWAY Corresponding Author Secondary Information: Corresponding Author's Institution: Corresponding Author's Secondary Institution: First Author: Hafizur Rahman First Author Secondary Information: Order of Authors: Hafizur Rahman Lina G Hjeljord Berit B Aam Morten Sørlie, PhD Arne Tronsmo Order of Authors Secondary Information: Abstract: Chitosan, obtained from chitin by partial N-deacetylation, shows little or no toxicity towards mammalian cells, is biodegradable, and non-allergenic. It is known that chitosan may have antifungal properties, but the effect of defined chitosan or chito- oligosaccharides (CHOS) with different degree of polymerization is not well known. The objective of this study was to produce CHOS with different DPn (average degree of polymerization) and determine the most effective DPn of chitosan and CHOS against Botrytris cinerea Pers. Ex Fr. and Mucor piriformis Fischer. In vitro testing showed that CHOS of DPn 23 and 40 had the highest germination inhibition against the tested pathogens. The original chitosan (DPn 206) and a collection of short CHOS (degree of polymerization of 3-10) were significantly (P<0.01) less effective than CHOS of DPn 23 and 40. M. piriformis M119J showed the most abnormal swelling in presence of CHOS DPn 40, but all abnormally swollen conidia showed further germ tube elongation. -
Development of a Single Tube Multiplex Real-Time PCR to Detect the Most Clinically Relevant Mucormycetes Species
ORIGINAL ARTICLE MYCOLOGY Development of a single tube multiplex real-time PCR to detect the most clinically relevant Mucormycetes species L. Bernal-Martı´nez*, M. J. Buitrago*, M. V. Castelli, J. L. Rodriguez-Tudela and M. Cuenca-Estrella Servicio de Micologı´a, Centro Nacional de Microbiologı´a, Instituto de Salud Carlos III, Madrid, Spain Abstract Mucormycetes infections are very difficult to treat and a delay in diagnosis could be fatal for the outcome of the patient. A molecular diagnostic technique based on Real Time PCR was developed for the simultaneous detection of Rhizopus oryzae, Rhizopus microsporus and the genus Mucor spp. in both culture and clinical samples. The methodology used was Molecular beacon species-specific probes with an internal control. This multiplex real-time PCR (MRT-PCR) was tested in 22 cultured strains and 12 clinical samples from patients suf- fering from a proven mucormycosis. Results showed 100% specificity and a detection limit of 1 fg of DNA per microlitre of sample. The sensitivity was 100% for clinical cultured strains and for clinical samples containing species detected by the PCR assay. Other mu- cormycetes species were not detected in clinical samples. This technique can be useful for clinical diagnosis and further studies are war- ranted. Keywords: Mucormycetes, multiplex real time, fungal invasive infection Original Submission: 21 March 2012; Revised Submission: 29 May 2012; Accepted: 14 June 2012 Editor: E. Roilides Article published online: 28 August 2012 Clin Microbiol Infect 2013; 19: E1–E7 10.1111/j.1469-0691.2012.03976.x caspofungin [5] for the treatment of invasive aspergillosis, as Corresponding author: L. -
Biological Control of Postharvest Fungal Rots of Rosaceous Fruits Using Microbial Antagonists and Plant Extracts – a Review
CZECH MYCOLOGY 68(1): 41–66, FEBRUARY 1, 2016 (ONLINE VERSION, ISSN 1805-1421) Biological control of postharvest fungal rots of rosaceous fruits using microbial antagonists and plant extracts – a review SHAZIA PARVEEN*, ABDUL HAMID WANI,MOHD YAQUB BHAT, JAHANGIR ABDULLAH KOKA Section of Mycology and Plant Pathology, Department of Botany, University of Kashmir, Hazaratbal Srinagar, IN-190006, India; [email protected], [email protected] *corresponding author Parveen S., Wani A.H., Bhat M.Y., Koka J.A. (2016): Biological control of post- harvest fungal rots of rosaceous fruits using microbial antagonists and plant ex- tracts – a review. – Czech Mycol. 68(1): 41–66. This article aims to give a comprehensive review on the use of microbial antagonists (fungi and bacteria), botanicals and compost extracts as biocontrol agents against different pathogenic fungi causing postharvest fungal rots in rosaceous fruits which shows that they can play an important role in the biomanagement of fungi causing rot diseases. Plant extracts reported in the literature against pathogenic fungi indicate that they can act as a good biological resource for producing safe biofungicides. However most of the work has been done under experimental conditions rather than field conditions. There is still a need for research to develop suitable formulations of biofungicides from these microbial biocontrol agents and plant extracts. The review reveals that extensive ecologi- cal research is also required in order to achieve optimum utilisation of biological resources to man- age various postharvest diseases of fruits. Key words: biological control, postharvest diseases, microbial pesticides, rosaceous fruits. Article history: received 14 June 2015, revised 15 December 2015, accepted 23 December 2015, published online 1 February 2016. -
Pest Risk Analysis (PRA) of Guava in Bangladesh
Government of the People’s Republic of Bangladesh Ministry of Agriculture Department of Agricultural Extension Plant Quarantine Wing Strengthening Phytosanitary Capacity in Bangladesh Project Pest Risk Analysis (PRA) of Guava in Bangladesh May 2017 Pest Risk Analysis (PRA) of Guava in Bangladesh Panel of Authors Dr. Sk. Hemayet Hossain - Team Leader Dr. S.M. Abul Hossain - Entomologist Dr. M. Anwar Hossain - Plant Pathologist Md. Lutfor Rahman - Agronomist Reviewed by Md. Ahsanullah Consultant (PRA) Strengthening Phytosanitary Capacity in Bangladesh Project Plant Quarantine Wing Department of Agricultural Extension Khamarbari, Farmgate, Dhaka. May 2017 Submitted By Eusuf and Associates South Avenue Tower (4th Floor, Bloack A) 7 Gulshan Avenue, Dhaka 1212, Bangladesh TeL: +(880-2) 880-2-883-2149, 880-2-883-2169, Fax: +88-02-988-6431 E-mail: [email protected], Website: http//www.eusuf.org FORWARD The Strengthening Phytosanitary Capacity in Bangladesh (SPCB) Project under Plant Quarantine Wing (PQW), Department of Agricultural Extension (DAE), Ministry of Agriculture conducted the study for the “Pest Risk Analysis (PRA) of Guava in Bangladesh” according to the provision of contract agreement signed between SPCB-DAE and Eusuf and Associates (Pvt.) Limited on December 2016. The PRA study is a five month assignment commencing from 1 January 2017 under the SPCB-DAE. The overall objectives of this Pest Risk Analysis are to identify the pests and/or pathways of quarantine concern for a specified area of Guava and evaluate their risk, to identify endangered areas, and if appropriate, to identify risk management options. To carry out the PRA study, the consulting firm conducted field investigations in 67 upazila under 28 major Guava growing districts of Bangladesh. -
Biological Control of Postharvest Diseases of Fruits and Vegetables – Davide Spadaro
AGRICULTURAL SCIENCES – Biological Control of Postharvest Diseases of Fruits and Vegetables – Davide Spadaro BIOLOGICAL CONTROL OF POSTHARVEST DISEASES OF FRUITS AND VEGETABLES Davide Spadaro AGROINNOVA Centre of Competence for the Innovation in the Agro-environmental Sector and Di.Va.P.R.A. – Plant Pathology, University of Torino, Grugliasco (TO), Italy Keywords: antibiosis, bacteria, biocontrol agents, biofungicide, biomass, competition, formulation, fruits, fungi, integrated disease management, parasitism, plant pathogens, postharvest, preharvest, resistance, vegetables, yeast Contents 1. Introduction 2. Postharvest diseases 3. Postharvest disease management 4. Biological control 5. The postharvest environment 6. Isolation of antagonists 7. Selection of antagonists 8. Mechanisms of action 9. Molecular characterization 10. Biomass production 11. Stabilization 12. Formulation 13. Enhancement of biocontrol 14. Extension of use of antagonists 15. Commercial development 16. Biofungicide products 17. Conclusions Acknowledgements Glossary Bibliography Biographical Sketch Summary Biological control using antagonists has emerged as one of the most promising alternatives to chemicals to control postharvest diseases. Since the 1990s, several biocontrol agents (BCAs) have been widely investigated against different pathogens and fruit crops. Many biocontrol mechanisms have been suggested to operate on fruit including competition, biofilm formation, production of diffusible and volatile antibiotics, parasitism, induction of host resistance, through