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Examples of Amino Acid Changes in Notothenioids Methods To
Supplementary Information S1 Candidate genes: examples of amino acid changes in notothenioids Methods To evaluate notothenioid amino acid changes in a cross‐section of genes, six candidates from a range of functional categories of interest were chosen for a more detailed examination. The selected genes comprised small, well‐characterised genes present in multiple fish species (mainly teleosts, but in some cases these analyses were extended to the Actinopterygii when sequences from the spotted gar (Lepisosteus oculatus) were available) and available in at least two notothenioids. The amino acid composition of a series of six candidate genes were further analysed in depth at the amino acid sequence level. These genes were superoxide dismutase 1 (SOD1), neuroglobin, dihydrofolate reductase (both paralogues), p53 and calmodulin. Clustal X alignments were constructed from orthologues identified in the four Notothenioid transcriptomes along with other fish orthologues extracted from either SwissProt (Bateman et al., 2017) or Ensembl release 91 (Aken et al., 2017). Alignment data were visualised and annotated in BoxShade version 3.21 (https://embnet.vital‐ it.ch/software/BOX_form.html). Notothenioid‐specific changes were noted and the type of substitution in terms of amino acid properties was noted. Results A range of amino acid changes were revealed, from virtually complete conservation between the notothenioids and other fish (calmodulin), to one amino acid substitution present in neuroglobin and SOD1, to more extensive changes in dihydrofolate reductase, dihydrofolate reductase‐like and p53. In the case of the latter three genes, notothenioid‐specific changes were at positions that were often highly variable in temperate fish species with up to six different amino acid substitutions and did not result in a definable pattern of directional substitution. -
Enrico SCHWABE Zoologische Staatssammlung Muenchen
. , E. SCHWABE NOVAPEX 6 (4): 89-105, 10 décembre 2005 A catalogue of Récent and fossil chitons (MoUusca: Polyplacophora) Addenda Enrico SCHWABE Zoologische Staatssammlung Muenchen, Muenchhausenstrasse 2 1 D-81247 Muenchen, Germany [email protected] KEYWORDS. MoUusca, Polyplacophora, taxon list, bibliography ABSTRACT. This paper lists species-group names of Récent and fossil Polyplacophora (MoUusca) that were published after 1998 (for the Récent species) and 1987 (for the fossil species). A total of 171 species were since then introduced, of which 123 are attributed to valid fossil taxa and 48 to valid Récent taxa. The authorship and complète références are provided for each species-group name. INTRODUCTION Considerazioni suUa famiglia Leptochitonidae Dali, 1889 (MoUusca: Polyplacophora). III. Le species Taxonomic work is impossible without an overview of terziarie e quatemarie Europee, con note sistematiche the scientific names existing in the particular taxon e filogenetiche. - Atti délia prima Giornata di Studi group. Catalogues generally are a great tool to obtain Malacologici Centra lîaliano di Studi Malacologici such overviews, as they often summarize information (1989): 19-140 (: 79; pi. 26). otherwise hard to gather and master. Type locality: Pezzo, near Villa S. Giovanni (Reggio Of the nearly 2600 taxa introduced on species level Calabria prov.); in material of upper Pleistocene, but within the Polyplacophora, 368 fossils and 914 Récent presumably originated from adjacent deposits of lower species are considered as valid (closing date: Pleistocene of bathyal faciès [Pezzo, presso Villa S. 31/10/2005). Giovanni (RC); in materiale del Pleistocene superiore, In the past, excellent catalogues of species-group ma presumibilmente originato da contigui depositi del names in Polyplacophora were compiled by Kaas & Pleistocene inferiore di faciès batiale]. -
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Appendix 1 FISH SPECIES IDENTIFIED FROM THE COASTAL EAST CAPE REGION Surveys of the East Cape Region (Bay of Plenty and East Coast) were conducted during 1992, 1993, and 1999 (see Tables 1, 2, and 4 for locality data), with additional records from the National Fish Collection. FAMILY, SPECIES, AND AUTHORITY COMMON NAME STATIONS Lamnidae Isurus oxyrinchus Rafinesque mako shark (P) E20o Squalidae Squalus mitsukurii Jordon & Snyder piked spurdog (D) W Dasyatidae Dasyatis brevicaudata (Hutton) shorttailed stingray E19o Myliobatidae eMyliobatis tenuicaudatus (Hector) eagle ray E03° Anguillidae Anguilla australis Richardson shortfin eel (F) W eAnguilla dieffenbachii Gray longfin eel (F) W Muraenidae Gymnothorax prasinus (Richardson) yellow moray E05o, E08° Ophichthyidae Scolecenchelys australis (MacLeay) shortfinned worm eel E01, E10, E11, E28, E29, E33, E48 Congridae Conger verreauxi Kaup southern conger eel E03, E07, E09, E12°, E13, E16, E18, E22o, E23o, E25o, E31, E33 Conger wilsoni (Bloch & Schneider) northern conger eel W; E05, E09, E12, E27 Conger sp. conger E01°, E31o Engraulidae Engraulis australis (White) anchovy (P) E Clupeidae Sardinops neopilchardus (Steindachner) pilchard (P) E Gonorynchidae Gonorynchus forsteri Ogilby sandfish (D) E Retropinnidae eRetropinna retropinna (Richardson) smelt (F) W; E Galaxiidae Galaxias maculatus (Jenyns) inanga (F) W; E Bythitidae eBidenichthys beeblebroxi Paulin grey brotula E01, E03, E08, E09, E10, E12, E18, E19, E21, E23, E27, E28, E29, E31, E33, E34 eBrosmodorsalis persicinus Paulin & Roberts pink brotula E02, E07, E10°, E18, E22, E29, E31, E33o eDermatopsis macrodon Ogilby fleshfish E08, E31 Moridae Austrophycis marginata (Günther) dwarf cod (D) E Continued next page > e = NZ endemic species. D = deepwater species (> 50 m depth); E = estuarine species; F = freshwater species; P = pelagic species; U = species of uncertain identity. -
Fossil and Recent Molluscan Types in the Auckland War Memorial Museum
Fossil and Recent molluscan types in the Auckland War Memorial Museum. Part 2: Polyplacophora and Scaphopoda Wilma M. Blom Auckland War Memorial Museum Abstract The Marine Department of Auckland War Memorial Museum has nearly 1800 primary types and a further 1811 paratypes and paralectotypes types in its collections. The majority are molluscan and this second part of a catalogue of these collections reviews the types for 14 chiton and two scaphopod species. It deals with seven primary types and 12 secondary type lots, which are split between 12 Recent taxa and four fossil taxa. All of the holotypes reviewed here have been illustrated. KEYWORDS Auckland Museum, name–bearing types, Mollusca, Polyplacophora, Scaphopoda. INTRODUCTION Iredale & Mestayer 1908; Webster 1908; Ashby 1926; Finlay 1926; Laws 1932). Each would have drawn on The Marine Department of Auckland War Memorial the expertise of the others despite living widely apart. Museum (AWMM) holds nearly 1800 lots of name– As chance would have it, four of the seven – Ashby, bearing primary types, in the form of holotypes, neotypes, Iredale, Mestayer and Webster – were born in England syntypes and lectotypes, and a further 1811 iconotypes, before moving to Australia or New Zealand, or both. paratypes and paralectotypes. These are spread across E. (Edwin) Ashby (1861–1941) was born in several phyla, but the great majority are Mollusca. They England and for health reasons moved to South Australia include terrestrial as well as marine species, and fossil as as a young man, where he became an estate agent well as extant taxa. and naturalist. He collected flowering plants, birds, Auckland Museum’s first list of biological primary and insects, but was particularly interested in Recent types, which included the molluscs, was published by and fossil chitons on which he published 60 papers Powell (1941) and he followed this with a supplement (Winckworth 1942). -
AEBR 114 Review of Factors Affecting the Abundance of Toheroa Paphies
Review of factors affecting the abundance of toheroa (Paphies ventricosa) New Zealand Aquatic Environment and Biodiversity Report No. 114 J.R. Williams, C. Sim-Smith, C. Paterson. ISSN 1179-6480 (online) ISBN 978-0-478-41468-4 (online) June 2013 Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries websites at: http://www.mpi.govt.nz/news-resources/publications.aspx http://fs.fish.govt.nz go to Document library/Research reports © Crown Copyright - Ministry for Primary Industries TABLE OF CONTENTS EXECUTIVE SUMMARY ....................................................................................................... 1 1. INTRODUCTION ............................................................................................................ 2 2. METHODS ....................................................................................................................... 3 3. TIME SERIES OF ABUNDANCE .................................................................................. 3 3.1 Northland region beaches .......................................................................................... 3 3.2 Wellington region beaches ........................................................................................ 4 3.3 Southland region beaches ......................................................................................... -
Physiological Effects and Biotransformation of Paralytic
PHYSIOLOGICAL EFFECTS AND BIOTRANSFORMATION OF PARALYTIC SHELLFISH TOXINS IN NEW ZEALAND MARINE BIVALVES ______________________________________________________________ A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy in Environmental Sciences in the University of Canterbury by Andrea M. Contreras 2010 Abstract Although there are no authenticated records of human illness due to PSP in New Zealand, nationwide phytoplankton and shellfish toxicity monitoring programmes have revealed that the incidence of PSP contamination and the occurrence of the toxic Alexandrium species are more common than previously realised (Mackenzie et al., 2004). A full understanding of the mechanism of uptake, accumulation and toxin dynamics of bivalves feeding on toxic algae is fundamental for improving future regulations in the shellfish toxicity monitoring program across the country. This thesis examines the effects of toxic dinoflagellates and PSP toxins on the physiology and behaviour of bivalve molluscs. This focus arose because these aspects have not been widely studied before in New Zealand. The basic hypothesis tested was that bivalve molluscs differ in their ability to metabolise PSP toxins produced by Alexandrium tamarense and are able to transform toxins and may have special mechanisms to avoid toxin uptake. To test this hypothesis, different physiological/behavioural experiments and quantification of PSP toxins in bivalves tissues were carried out on mussels ( Perna canaliculus ), clams ( Paphies donacina and Dosinia anus ), scallops ( Pecten novaezelandiae ) and oysters ( Ostrea chilensis ) from the South Island of New Zealand. Measurements of clearance rate were used to test the sensitivity of the bivalves to PSP toxins. Other studies that involved intoxication and detoxification periods were carried out on three species of bivalves ( P. -
WMSDB - Worldwide Mollusc Species Data Base
WMSDB - Worldwide Mollusc Species Data Base Family: TURBINIDAE Author: Claudio Galli - [email protected] (updated 07/set/2015) Class: GASTROPODA --- Clade: VETIGASTROPODA-TROCHOIDEA ------ Family: TURBINIDAE Rafinesque, 1815 (Sea) - Alphabetic order - when first name is in bold the species has images Taxa=681, Genus=26, Subgenus=17, Species=203, Subspecies=23, Synonyms=411, Images=168 abyssorum , Bolma henica abyssorum M.M. Schepman, 1908 aculeata , Guildfordia aculeata S. Kosuge, 1979 aculeatus , Turbo aculeatus T. Allan, 1818 - syn of: Epitonium muricatum (A. Risso, 1826) acutangulus, Turbo acutangulus C. Linnaeus, 1758 acutus , Turbo acutus E. Donovan, 1804 - syn of: Turbonilla acuta (E. Donovan, 1804) aegyptius , Turbo aegyptius J.F. Gmelin, 1791 - syn of: Rubritrochus declivis (P. Forsskål in C. Niebuhr, 1775) aereus , Turbo aereus J. Adams, 1797 - syn of: Rissoa parva (E.M. Da Costa, 1778) aethiops , Turbo aethiops J.F. Gmelin, 1791 - syn of: Diloma aethiops (J.F. Gmelin, 1791) agonistes , Turbo agonistes W.H. Dall & W.H. Ochsner, 1928 - syn of: Turbo scitulus (W.H. Dall, 1919) albidus , Turbo albidus F. Kanmacher, 1798 - syn of: Graphis albida (F. Kanmacher, 1798) albocinctus , Turbo albocinctus J.H.F. Link, 1807 - syn of: Littorina saxatilis (A.G. Olivi, 1792) albofasciatus , Turbo albofasciatus L. Bozzetti, 1994 albofasciatus , Marmarostoma albofasciatus L. Bozzetti, 1994 - syn of: Turbo albofasciatus L. Bozzetti, 1994 albulus , Turbo albulus O. Fabricius, 1780 - syn of: Menestho albula (O. Fabricius, 1780) albus , Turbo albus J. Adams, 1797 - syn of: Rissoa parva (E.M. Da Costa, 1778) albus, Turbo albus T. Pennant, 1777 amabilis , Turbo amabilis H. Ozaki, 1954 - syn of: Bolma guttata (A. Adams, 1863) americanum , Lithopoma americanum (J.F. -
Fish, Various Invertebrates
Zambezi Basin Wetlands Volume II : Chapters 7 - 11 - Contents i Back to links page CONTENTS VOLUME II Technical Reviews Page CHAPTER 7 : FRESHWATER FISHES .............................. 393 7.1 Introduction .................................................................... 393 7.2 The origin and zoogeography of Zambezian fishes ....... 393 7.3 Ichthyological regions of the Zambezi .......................... 404 7.4 Threats to biodiversity ................................................... 416 7.5 Wetlands of special interest .......................................... 432 7.6 Conservation and future directions ............................... 440 7.7 References ..................................................................... 443 TABLE 7.2: The fishes of the Zambezi River system .............. 449 APPENDIX 7.1 : Zambezi Delta Survey .................................. 461 CHAPTER 8 : FRESHWATER MOLLUSCS ................... 487 8.1 Introduction ................................................................. 487 8.2 Literature review ......................................................... 488 8.3 The Zambezi River basin ............................................ 489 8.4 The Molluscan fauna .................................................. 491 8.5 Biogeography ............................................................... 508 8.6 Biomphalaria, Bulinis and Schistosomiasis ................ 515 8.7 Conservation ................................................................ 516 8.8 Further investigations ................................................. -
New Zealand Fishes a Field Guide to Common Species Caught by Bottom, Midwater, and Surface Fishing Cover Photos: Top – Kingfish (Seriola Lalandi), Malcolm Francis
New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing Cover photos: Top – Kingfish (Seriola lalandi), Malcolm Francis. Top left – Snapper (Chrysophrys auratus), Malcolm Francis. Centre – Catch of hoki (Macruronus novaezelandiae), Neil Bagley (NIWA). Bottom left – Jack mackerel (Trachurus sp.), Malcolm Francis. Bottom – Orange roughy (Hoplostethus atlanticus), NIWA. New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing New Zealand Aquatic Environment and Biodiversity Report No: 208 Prepared for Fisheries New Zealand by P. J. McMillan M. P. Francis G. D. James L. J. Paul P. Marriott E. J. Mackay B. A. Wood D. W. Stevens L. H. Griggs S. J. Baird C. D. Roberts‡ A. L. Stewart‡ C. D. Struthers‡ J. E. Robbins NIWA, Private Bag 14901, Wellington 6241 ‡ Museum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6011Wellington ISSN 1176-9440 (print) ISSN 1179-6480 (online) ISBN 978-1-98-859425-5 (print) ISBN 978-1-98-859426-2 (online) 2019 Disclaimer While every effort was made to ensure the information in this publication is accurate, Fisheries New Zealand does not accept any responsibility or liability for error of fact, omission, interpretation or opinion that may be present, nor for the consequences of any decisions based on this information. Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries website at http://www.mpi.govt.nz/news-and-resources/publications/ A higher resolution (larger) PDF of this guide is also available by application to: [email protected] Citation: McMillan, P.J.; Francis, M.P.; James, G.D.; Paul, L.J.; Marriott, P.; Mackay, E.; Wood, B.A.; Stevens, D.W.; Griggs, L.H.; Baird, S.J.; Roberts, C.D.; Stewart, A.L.; Struthers, C.D.; Robbins, J.E. -
Localised Population Collapse of the Invasive Brown Alga, Undaria Pinnatifida: Twenty Years of Monitoring on Wellington’S South Coast
Localised population collapse of the invasive brown alga, Undaria pinnatifida: Twenty years of monitoring on Wellington’s south coast By Cody Lorkin A thesis submitted to Victoria University of Wellington in partial fulfilment for the requirements for the degree of Master of Science in Marine Biology Victoria University of Wellington 2019 Abstract Invasive species pose a significant threat to marine environments around the world. Monitoring and research of invasive species is needed to provide direction for management programmes. This thesis is a continuation of research conducted on the invasive alga Undaria pinnatifida following its discovery on Wellington’s south coast in 1997. By compiling the results from previous monitoring surveys (1997- 2000 and 2008) and carrying out additional seasonal surveys in 2018, I investigate the distribution and spread of U. pinnatifida on Wellington’s south coast, how this may have changed over time and what impacts it may have had on native macroalgal and invertebrate grazer communities. Intertidal macroalgal composition and U. pinnatifida abundance was recorded on fifteen occasions between 1997 and 2018 at two sites at Island Bay and two sites at Owhiro Bay. In addition, the subtidal abundance of six invertebrate grazers was recorded eight times within the same sampling period. Microtopography was also measured at each site to determine if topography had an influence on macroalgal composition. From 1997 to 2000 U. pinnatifida abundance gradually increased per year, but its spread remained localised to Island Bay. In 2008 U. pinnatifida had spread westward to Owhiro Bay where it was highly abundant. However, in 2018 no U. pinnatifida was recorded at any of the sites indicating a collapse of the invasion front. -
Molluscs 2018 Program and Abstract Handbook
© Malacological Society of Australia 2018 Abstracts may be reproduced provided that appropriate acknowledgement is given and the reference cited. Requests for this book should be made to: Malacological Society of Australia information at: http://www.malsocaus.org/contactus.htm Program and Abstracts for the 2018 meeting of the Malacological Society of Australasia (2nd to 5th December, Wellington, New Zealand) Cover Photo and Design: Kerry Walton Logo Design: Platon Vafiadis Compilation and layout: Julie Burton, Carmel McDougall and Kerry Walton Publication Date: November 2018 Recommended Retail Price: $25.00 AUD Malacological Society of Australasia, Triennial Conference Table of contents The Conference Venue ................................................................................................................... 3 Venue floorplan ............................................................................................................................. 3 General Information ....................................................................................................................... 4 Molluscs 2018 Organising Committee ............................................................................................. 6 Our Sponsors .................................................................................................................................. 6 MSA Annual General Meeting and Election of Office Bearers ......................................................... 7 President’s Welcome ..................................................................................................................... -
Auckland Shell Club Auction Lot List - 24 October 2015 Albany Hall
Auckland Shell Club Auction Lot List - 24 October 2015 Albany Hall. Setup from 9am. Viewing from 10am. Auction starts at noon. Lot Type Reserve 1 WW Many SMALL CYPRAEIDAE including the rare Rosaria caputdraconis from Easter Is. Mauritian scurra from Somalia, Cypraea eburnea white from from, New Caledonia, Cypraea chinensis from Solomon Is Lyncina sulcidentata from Hawaii and heaps more. 2 WW Many CONIDAE including rare Conus queenslandis (not perfect!) Conus teramachii, beautiful Conus trigonis, Conus ammiralis, all from Australia, Conus aulicus, Conus circumcisus, Conus gubernator, Conus generalis, Conus bullatus, Conus distans, and many more. 3 WW BIVALVES: Many specials including Large Pearl Oyster Pinctada margaritifera, Chlamys sowerbyi, Glycymeris gigantea, Macrocallista nimbosa, Pecten glaber, Amusiium pleuronectes, Pecten pullium, Zygochlamys delicatula, and heaps more. 4 WW VOLUTIDAE: Rare Teramachia johnsoni, Rare Cymbiolacca thatcheri, Livonia roadnightae, Zidona dufresnei, Lyria kurodai, Cymbiola rutila, Cymbium olia, Pulchra woolacottae, Cymbiola pulchra peristicta, Athleta studeri, Amoria undulata, Cymbiola nivosa. 5 WW MIXTURE Rare Campanile symbolium, Livonia roadnightae, Chlamys australis, Distorsio anus, Bulluta bullata, Penion maximus, Matra incompta, Conus imperialis, Ancilla glabrata, Strombus aurisdianae, Fusinus brasiliensis, Columbarium harrisae, Mauritia mauritana, and heaps and heaps more! 6 WW CYPRAEIDAE: 12 stunning shells including Trona stercoraria, Cypraea cervus, Makuritia eglantrine f. grisouridens, Cypraea