Emendation of Paramoebidium Avitruviense
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Impacts of Flow Regulation and Artificial Floods in An
i IMPACTS OF FLOW REGULATION AND ARTIFICIAL FLOODS IN AN UPLAND STREAM ECOSYSTEM Benjamin Robert Gillespie Submitted in accordance with the requirements for the degree of Doctor of Philosophy The University of Leeds School of Geography November 2014 ii The candidate confirms that the work submitted is his own, except where work which has formed part of jointly authored publications has been included. The contribution of the candidate and the other authors to this work has been explicitly indicated below. The candidate confirms that appropriate credit has been given within the thesis where reference has been made to the work of others. Chapter 3 Publication title: A critical analysis of regulated river ecosystem responses to environmental flows from reservoirs Authors: Gillespie, Ben; University of Leeds, School of Geography/ Water@Leeds DeSmet, Simon; University of Leeds, School of Geography/ Water@Leeds Kay, Paul; University of Leeds, School of Geography/ Water@Leeds Tillotson, Martin; University of Leeds, School of Geography/ Water@Leeds Brown, Lee; University of Leeds, School of Geography/ Water@Leeds Publication: Freshwater Biology [in press] Work attributable to Ben Gillespie: Data collection (shared approximately 3:1 (Gillespie:DeSmet)), data quality control and analysis; project management; manuscript production. Work attributable to other authors: Data collection (shared approximately 3:1 (Gillespie:DeSmet)), advice; suggestions of improvements; proof reading. Chapter 8 Publication title: Effects of impoundment on macroinvertebrate community assemblages in upland streams Authors: Gillespie, Ben; University of Leeds, School of Geography/ Water@Leeds Brown, Lee; University of Leeds, School of Geography/ Water@Leeds Kay, Paul; University of Leeds, School of Geography/ Water@Leeds Publication: River Research and Applications [in press] Work attributable to Ben Gillespie: Data collection, quality control and analysis; project management; manuscript production. -
Assessing the Vulnerability of Aquatic Macroinvertebrates to Climate Warming in a Mountainous Watershed: Supplementing Presence-Only Data with Species Traits
water Article Assessing the Vulnerability of Aquatic Macroinvertebrates to Climate Warming in a Mountainous Watershed: Supplementing Presence-Only Data with Species Traits Anne-Laure Besacier Monbertrand 1, Pablo Timoner 2 , Kazi Rahman 2, Paolo Burlando 3, Simone Fatichi 3, Yves Gonseth 4, Frédéric Moser 2, Emmanuel Castella 1 and Anthony Lehmann 2,* 1 Aquatic Ecology Group, Department F.-A. Forel for Environmental and Aquatic Sciences, University of Geneva, Institute for Environmental Sciences, 66 Boulevard Carl-Vogt, CH-1205 Geneva, Switzerland; [email protected] (A.-L.B.M.); [email protected] (E.C.) 2 enviroSPACE Group, Department F.-A. Forel for Environmental and Aquatic Sciences, University of Geneva, Institute for Environmental Sciences, 66 Boulevard Carl-Vogt, CH-1205 Geneva, Switzerland; [email protected] (P.T.); [email protected] (K.R.); [email protected] (F.M.) 3 ETH Zürich, Institute of Environmental Engineering, HIL D 22.3, Stefano-Franscini-Platz 5, 8093 Zürich, Switzerland; [email protected] (P.B.); [email protected] (S.F.) 4 Swiss Biological records Center, Passage Max-Meuron 6, CH-2000 Neuchâtel, Switzerland; [email protected] * Correspondence: [email protected]; Tel.: +41-22-379-0021 Received: 17 November 2018; Accepted: 22 March 2019; Published: 27 March 2019 Abstract: Mountainous running water ecosystems are vulnerable to climate change with major changes coming from warming temperatures. Species distribution will be affected and some species are anticipated to be winners (increasing their range) or losers (at risk of extinction). Climate change vulnerability is seldom integrated when assessing threat status for lists of species at risk (Red Lists), even though this might appear an important addition in the current context. -
Examining New Phylogenetic Markers to Uncover The
Persoonia 30, 2013: 106–125 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158513X666394 Examining new phylogenetic markers to uncover the evolutionary history of early-diverging fungi: comparing MCM7, TSR1 and rRNA genes for single- and multi-gene analyses of the Kickxellomycotina E.D. Tretter1, E.M. Johnson1, Y. Wang1, P. Kandel1, M.M. White1 Key words Abstract The recently recognised protein-coding genes MCM7 and TSR1 have shown significant promise for phylo genetic resolution within the Ascomycota and Basidiomycota, but have remained unexamined within other DNA replication licensing factor fungal groups (except for Mucorales). We designed and tested primers to amplify these genes across early-diverging Harpellales fungal clades, with emphasis on the Kickxellomycotina, zygomycetous fungi with characteristic flared septal walls Kickxellomycotina forming pores with lenticular plugs. Phylogenetic tree resolution and congruence with MCM7 and TSR1 were com- MCM7 pared against those inferred with nuclear small (SSU) and large subunit (LSU) rRNA genes. We also combined MS277 MCM7 and TSR1 data with the rDNA data to create 3- and 4-gene trees of the Kickxellomycotina that help to resolve MS456 evolutionary relationships among and within the core clades of this subphylum. Phylogenetic inference suggests ribosomal biogenesis protein that Barbatospora, Orphella, Ramicandelaber and Spiromyces may represent unique lineages. It is suggested that Trichomycetes these markers may be more broadly useful for phylogenetic studies among other groups of early-diverging fungi. TSR1 Zygomycota Article info Received: 27 June 2012; Accepted: 2 January 2013; Published: 20 March 2013. INTRODUCTION of Blastocladiomycota and Kickxellomycotina, as well as four species of Mucoromycotina have their genomes available The molecular revolution has transformed our understanding of (based on available online searches and the list at http://www. -
Distribution and Density of Ephemeroptera and Plecoptera Of
EPHEMEROPTERA AND PLECOPTERA OF A SMALL BROOK, CENTRAL EUROPE 327 Distribution and density of Introduction Ephemeroptera and Plecoptera of The relationships between Ephemeroptera and the Radíkovský brook (Czech Plecoptera distribution and environmental Republic) in relation to selected variables within large catchments areas in the Czech Republic have been intensively studied environmental variables (Helešic, 1995; Soldán et al., 1998; Zahrádková, 1999). However, despite relatively extensive knowledge on ecology of mayflies and stoneflies MARTINA JEZBEROVÁ and long-term trends in changes of their distribution, there are very fragmentary data on Institute of Entomology, Academy of Sciences of distribution and seasonal changes of respective the Czech Republic and Faculty of Biological taxocenes in small brooks and respective small Sciences, University of South Bohemia, basins. Although this knowledge is undoubtedly Branišovská 31, CZ - 370 05, České Budějovice, necessary to clear up the whole ecological system, Czech Republic. data are scattered within the literature. One of rare [email protected] examples of complex, detailed and all-season data approach is that by Vondrejs (1958) describing benthic communities within the future water reservoir in Central Bohemia. This author recognized the importance of very small water bodies to the environment in the area studied. The objective of this paper is to describe main factors affecting both density and distribution in a small water flow of the species belonging to Ephemeroptera -
Life History and Production of Mayflies, Stoneflies, and Caddisflies (Ephemeroptera, Plecoptera, and Trichoptera) in a Spring-Fe
Color profile: Generic CMYK printer profile Composite Default screen 1083 Life history and production of mayflies, stoneflies, and caddisflies (Ephemeroptera, Plecoptera, and Trichoptera) in a spring-fed stream in Prince Edward Island, Canada: evidence for population asynchrony in spring habitats? Michelle Dobrin and Donna J. Giberson Abstract: We examined the life history and production of the Ephemeroptera, Plecoptera, and Trichoptera (EPT) commu- nity along a 500-m stretch of a hydrologically stable cold springbrook in Prince Edward Island during 1997 and 1998. Six mayfly species (Ephemeroptera), 6 stonefly species (Plecoptera), and 11 caddisfly species (Trichoptera) were collected from benthic and emergence samples from five sites in Balsam Hollow Brook. Eleven species were abundant enough for life-history and production analysis: Baetis tricaudatus, Cinygmula subaequalis, Epeorus (Iron) fragilis,andEpeorus (Iron) pleuralis (Ephemeroptera), Paracapnia angulata, Sweltsa naica, Leuctra ferruginea, Amphinemura nigritta,and Nemoura trispinosa (Plecoptera), and Parapsyche apicalis and Rhyacophila brunnea (Trichoptera). Life-cycle timing of EPT taxa in Balsam Hollow Brook was generally similar to other literature reports, but several species showed extended emergence periods when compared with other studies, suggesting a reduction in synchronization of life-cycle timing, pos- sibly as a result of the thermal patterns in the stream. Total EPT secondary production (June 1997 to May 1998) was 2.74–2.80 g·m–2·year–1 dry mass (size-frequency method). Mayflies were dominant, with a production rate of 2.2 g·m–2·year–1 dry mass, followed by caddisflies at 0.41 g·m–2·year–1 dry mass, and stoneflies at 0.19 g·m–2·year–1 dry mass. -
About the Book the Format Acknowledgments
About the Book For more than ten years I have been working on a book on bryophyte ecology and was joined by Heinjo During, who has been very helpful in critiquing multiple versions of the chapters. But as the book progressed, the field of bryophyte ecology progressed faster. No chapter ever seemed to stay finished, hence the decision to publish online. Furthermore, rather than being a textbook, it is evolving into an encyclopedia that would be at least three volumes. Having reached the age when I could retire whenever I wanted to, I no longer needed be so concerned with the publish or perish paradigm. In keeping with the sharing nature of bryologists, and the need to educate the non-bryologists about the nature and role of bryophytes in the ecosystem, it seemed my personal goals could best be accomplished by publishing online. This has several advantages for me. I can choose the format I want, I can include lots of color images, and I can post chapters or parts of chapters as I complete them and update later if I find it important. Throughout the book I have posed questions. I have even attempt to offer hypotheses for many of these. It is my hope that these questions and hypotheses will inspire students of all ages to attempt to answer these. Some are simple and could even be done by elementary school children. Others are suitable for undergraduate projects. And some will take lifelong work or a large team of researchers around the world. Have fun with them! The Format The decision to publish Bryophyte Ecology as an ebook occurred after I had a publisher, and I am sure I have not thought of all the complexities of publishing as I complete things, rather than in the order of the planned organization. -
Diversity of Benthic Macroinvertebrates in Margaraça Forest Streams Portugal
DIVERSITY OF BENTHIC MACROINVERTEBRATES IN MARGARACA FOREST STREAMS (PORTUGAL). Manuela Abelho Departamento de Zoologia, Universldadc de Coimbra, 3000 Coimbra, Portugal Palabras Clave: biodiversidad, comunidades de macroinvertebrados acu6ticos, grupos funcionalcs Keywords: biodiversity, stream macroinvertebrate communities, functional fceding groups. ABSTRACT Structure and diversity of the benthic macroinvertcbrate fauna were st~tdiedin two deciduous forest streams in Central Portugal. In the three sampling occasions. 120 tax-cl were collected from the two streams. Number of tci,xci per sampling occasion ranged from 53 to 60. Macroinvertebrate densities ranged from 1465 to 2365. Insects were the most abundant taxonomic group (280 ?h) in all samples. Detritivorous invertebrates were numerically dominant in both streams, representing 62 to 85 5% of the total macroinvertebratc community. INTRODUCTION terrestrial insects have aquatic larval instars, their development depends on the surrounding vegetalion in two ways; while thcy Margaraqa Forcst is a Natural Rcservc (Protected Area of live underwater and after their emergencc as terrestrial adults. Serra do A~or,D.L. 67/82. 3rd March). It is a very old forest Thus. it is possible that thc aquatic communities arc also posi- tlotninated by chestnuts (Cnstnrlecl scitiva Miller) and oaks tively influenced by the high plant species diversity of the forest. (Qilerciis robilr. L.). Less abundant elements are Portuguese Several low order streams abundantly irrigate Margara~a laurel cherries (Pr~lr~ilsl~lsitar~ica L. ssp Ii~sirtir~icn),laurels Forest; nevertheless, no effort has been so far done to provide (Lcl~irlls11oOili.s L.). hollies (Hex cicjil~folilllnL.). arbutus information about the aquatic invcrtcbratcs of these streams. (Ar.h~lt~l~~~I~~LIO L.), hazels (Coq~1ll.sa~~llnr~u L.), cherries The airn of this work was to generate baseline data on the (Prllnlrs civiilrlz L.) and lnorellos (PTLLIILISCC~CISLIS L.). -
Group of Microorganisms at the Animal-Fungal Boundary
16 Aug 2002 13:56 AR AR168-MI56-14.tex AR168-MI56-14.SGM LaTeX2e(2002/01/18) P1: GJC 10.1146/annurev.micro.56.012302.160950 Annu. Rev. Microbiol. 2002. 56:315–44 doi: 10.1146/annurev.micro.56.012302.160950 First published online as a Review in Advance on May 7, 2002 THE CLASS MESOMYCETOZOEA: A Heterogeneous Group of Microorganisms at the Animal-Fungal Boundary Leonel Mendoza,1 John W. Taylor,2 and Libero Ajello3 1Medical Technology Program, Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing Michigan, 48824-1030; e-mail: [email protected] 2Department of Plant and Microbial Biology, University of California, Berkeley, California 94720-3102; e-mail: [email protected] 3Centers for Disease Control and Prevention, Mycotic Diseases Branch, Atlanta Georgia 30333; e-mail: [email protected] Key Words Protista, Protozoa, Neomonada, DRIP, Ichthyosporea ■ Abstract When the enigmatic fish pathogen, the rosette agent, was first found to be closely related to the choanoflagellates, no one anticipated finding a new group of organisms. Subsequently, a new group of microorganisms at the boundary between an- imals and fungi was reported. Several microbes with similar phylogenetic backgrounds were soon added to the group. Interestingly, these microbes had been considered to be fungi or protists. This novel phylogenetic group has been referred to as the DRIP clade (an acronym of the original members: Dermocystidium, rosette agent, Ichthyophonus, and Psorospermium), as the class Ichthyosporea, and more recently as the class Mesomycetozoea. Two orders have been described in the mesomycetozoeans: the Der- mocystida and the Ichthyophonida. So far, all members in the order Dermocystida have been pathogens either of fish (Dermocystidium spp. -
Arthropod-Pathogenic Entomophthorales from Switzerland
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Sydowia Jahr/Year: 2007 Band/Volume: 59 Autor(en)/Author(s): Keller Siegfried Artikel/Article: Arthropod-pathogenic Entomophthorales from Switzerland. III. First additions. 75-113 ©Verlag Ferdinand Berger & Söhne Ges.m.b.H., Horn, Austria, download unter www.biologiezentrum.at Arthropod-pathogenic Entomophthorales from Switzerland. III. First additions Siegfried Keller Federal Research Station Agroscope Reckenholz-TaÈnikon ART, Reckenholzstrasse 191, CH-8046 Zurich, Switzerland Keller S. (2007) Arthropod-pathogenic Entomophthorales from Switzerland. III. First additions. ± Sydowia 59 (1): 75±113. Twenty-nine species of arthropod-pathogenic Entomophthorales new to Switzerland are described. Nine are described as new species, namely Batkoa hydrophila from Plecoptera, Conidiobolus caecilius from Psocoptera, Entomophaga antochae from Limoniidae (Diptera), E. thuricensis from Cicadellidae (Homo- ptera), Erynia fluvialis from midges (Diptera), E. tumefacta from Muscidae (Dip- tera), Eryniopsis rhagonidis from Rhagionidae (Diptera), Pandora longissima from Limoniidae (Diptera) and Strongwellsea pratensis from Muscidae (Diptera). Pan- dora americana, P. sciarae, Zoophthora aphrophorae and Z. rhagonycharum are new combinations. Eleven species are first records since the original description. The list of species recorded from Switzerland amounts to 90 species representing 38% of the world-wide known species of arthropod-pathogenic Entomophthorales. Part I of this monograph (Keller 1987) treated the genera Con- idiobolus, Entomophaga [including the species later transferred on to the new genus Batkoa Humber (1989)], and Entomophthora. Part II (Keller 1991) treated the genera Erynia sensu lato (now subdivided into the genera Erynia, Furia and Pandora), Eryniopsis, Neozygites, Zoophthora and Tarichium. So far 51 species including 8new ones have been listed. -
Diversity and Distribution of Unicellular Opisthokonts Along the European Coast Analyzed Using High-Throughput Sequencing
Diversity and distribution of unicellular opisthokonts along the European coast analyzed using high-throughput sequencing Javier del Campo1,2,*, Diego Mallo3, Ramon Massana4, Colomban de Vargas5,6, Thomas A. Richards7,8, and Iñaki Ruiz-Trillo1,9,10 1Institut de Biologia Evolutiva (CSIC-UPF), Passeig Marítim de la Barceloneta 37-49, 08003 Barcelona, Catalonia, Spain. 3Department of Biochemistry, Genetics and Immunology, University of Vigo, Vigo, Galicia, Spain 4Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona, Catalonia, Spain 5CNRS, UMR 7144, Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Roscoff, France 6UPMC Univ. Paris 06, UMR 7144, Station Biologique de Roscoff, Roscoff, France 7Geoffrey Pope Building, Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter, UK 8Canadian Institute for Advanced Research, CIFAR Program in Integrated Microbial Biodiversity 9Departament de Genètica, Universitat de Barcelona, Barcelona, Catalonia, Spain 10Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Catalonia, Spain Summary The opisthokonts are one of the major super-groups of eukaryotes. It comprises two major clades: 1) the Metazoa and their unicellular relatives and 2) the Fungi and their unicellular relatives. There is, however, little knowledge of the role of opisthokont microbes in many natural environments, especially among non-metazoan and non-fungal opisthokonts. Here we begin to address this gap by analyzing high throughput 18S rDNA and 18S rRNA sequencing data from different European coastal sites, sampled at different size fractions and depths. In particular, we analyze the diversity and abundance of choanoflagellates, filastereans, ichthyosporeans, nucleariids, corallochytreans and their related lineages. Our results show the great diversity of choanoflagellates in coastal waters as well as a relevant role of the ichthyosporeans and the uncultured marine opisthokonts (MAOP). -
Desktop Biodiversity Report
Desktop Biodiversity Report Land at Balcombe Parish ESD/14/747 Prepared for Katherine Daniel (Balcombe Parish Council) 13th February 2014 This report is not to be passed on to third parties without prior permission of the Sussex Biodiversity Record Centre. Please be aware that printing maps from this report requires an appropriate OS licence. Sussex Biodiversity Record Centre report regarding land at Balcombe Parish 13/02/2014 Prepared for Katherine Daniel Balcombe Parish Council ESD/14/74 The following information is included in this report: Maps Sussex Protected Species Register Sussex Bat Inventory Sussex Bird Inventory UK BAP Species Inventory Sussex Rare Species Inventory Sussex Invasive Alien Species Full Species List Environmental Survey Directory SNCI M12 - Sedgy & Scott's Gills; M22 - Balcombe Lake & associated woodlands; M35 - Balcombe Marsh; M39 - Balcombe Estate Rocks; M40 - Ardingly Reservior & Loder Valley Nature Reserve; M42 - Rowhill & Station Pastures. SSSI Worth Forest. Other Designations/Ownership Area of Outstanding Natural Beauty; Environmental Stewardship Agreement; Local Nature Reserve; National Trust Property. Habitats Ancient tree; Ancient woodland; Ghyll woodland; Lowland calcareous grassland; Lowland fen; Lowland heathland; Traditional orchard. Important information regarding this report It must not be assumed that this report contains the definitive species information for the site concerned. The species data held by the Sussex Biodiversity Record Centre (SxBRC) is collated from the biological recording community in Sussex. However, there are many areas of Sussex where the records held are limited, either spatially or taxonomically. A desktop biodiversity report from SxBRC will give the user a clear indication of what biological recording has taken place within the area of their enquiry. -
Plecoptera: Chloroperlidae), a New Stonefly from California, U.S.A
Stark, Bill P. & Richard W. Baumann, 2007. Sweltsa yurok (Plecoptera: Chloroperlidae), a new stonefly from California, U.S.A. Illiesia, 3(10):95-101. Available online: http://www2.pms-lj.si/illiesia/Illiesia03-10.pdf SWELTSA YUROK (PLECOPTERA: CHLOROPERLIDAE), A NEW STONEFLY FROM CALIFORNIA, U.S.A. Bill P. Stark1and Richard W. Baumann 2 1 Box 4045, Department of Biology, Mississippi College, Clinton, Mississippi, U.S.A. 39058 E-mail: [email protected] 2 Department of Integrative Biology, Monte L. Bean Life Science Museum, Brigham Young University, Provo, UT 84602 E-mail: [email protected] ABSTRACT Sweltsa yurok, sp. n. is described from specimens collected in the Coast Range of northern California. The new species is compared to S. pisteri Baumann & Bottorff, and S. tamalpa (Ricker), closely related species found in the same region, and a provisional key to males of the Sweltsa tamalpa species group is presented. Keywords: Plecoptera, Chloroperlidae, Sweltsa, new species, California INTRODUCTION Following the studies of Surdick (1995) and The Sweltsa tamalpa group Baumann & Bottorff (1997) the systematics of western Nearctic Sweltsa has remained unchanged with 21 Members of this group have a relatively short, species recognized. In 1998, 2001 and again in 2005 slender, hairy epiproct with bare tip and a median, we, and various colleagues, collected specimens of a bare knob on male tergum 9; the epiproct apex is small distinctive Sweltsa in tributaries of Willow expanded near midlength, usually giving the Creek in the greater Trinity-Klamath River drainage structure a foot shaped appearance in lateral aspect. of northern California, an area where several other Female subgenital plates are more or less triangular, interesting stoneflies have been discovered have a basal transverse groove, and are relatively (Baumann & Lauck 1987; Stark & Baumann 2001; strongly sclerotized.