Parasites and Phytoplankton, with Special Emphasis on Dinoflagellate
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Identification of a Second Rrna Gene Unit in the Perkinsus Andrewsi Genome
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/8572105 Identification of a Second rRNA Gene Unit in the Perkinsus andrewsi Genome Article in Journal of Eukaryotic Microbiology · March 2004 DOI: 10.1111/j.1550-7408.2004.tb00553.x · Source: PubMed CITATIONS READS 18 61 3 authors: Wolf T Pecher José A. Fernández Robledo University of Baltimore Bigelow Laboratory for Ocean Sciences 17 PUBLICATIONS 112 CITATIONS 79 PUBLICATIONS 1,316 CITATIONS SEE PROFILE SEE PROFILE Gerardo R Vasta University of Maryland, Baltimore 220 PUBLICATIONS 6,701 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Perkinsus illustrations View project All content following this page was uploaded by José A. Fernández Robledo on 26 June 2017. The user has requested enhancement of the downloaded file. All in-text references underlined in blue are added to the original document and are linked to publications on ResearchGate, letting you access and read them immediately. J. Eukaryot. Microbiol., 51(2), 2004 pp. 234±245 q 2004 by the Society of Protozoologists Identi®cation of a Second rRNA Gene Unit in the Perkinsus andrewsi Genome WOLF T. PECHER, JOSEÂ A. F. ROBLEDO and GERARDO R. VASTA Center of Marine Biotechnology, University of Maryland Biotechnology Institute, University of Maryland, Baltimore, Maryland 21202, USA ABSTRACT. Perkinsus species are parasitic protozoa of mollusks, currently classi®ed within the Perkinsozoa, a recently established phylum that is basal to the Apicomplexa and Dinozoa. Ribosomal RNA (rRNA) genes and their intergenic spacers have been used to support the taxonomy of Perkinsus species, the description of new species, and to develop molecular probes for their detection and identi®cation. -
Parasitism of Photosynthetic Dinoflagellates in a Shallow Subestuary of Chesapeake Bay, USA
- AQUATIC MICROBIAL ECOLOGY Vol. 11: 1-9, 1996 Published August 29 Aquat Microb Ecol Parasitism of photosynthetic dinoflagellates in a shallow subestuary of Chesapeake Bay, USA D. W. Coats*,E. J. Adam, C. L. Gallegos, S. Hedrick Smithsonian Environmental Research Center, PO Box 28, Edgewater, Maryland 21037, USA ABSTRACT- Rhode Rlver (USA)populatlons of the red-tlde d~noflagellatesGyrnnodinium sanguineum Hlrasaka, 1922, Cyi-odinium uncatenum Hulburt, 1957, and Scnppsiella trochoidea (Steln) Loeblich 111, 1976, were commonly infected by thelr parasltlc relative Amoebophrya cei-atil Cachon, 1964, dunng the summer of 1992. Mean ~nfectionlevels were relatively low, wlth data for vertically Integrated sam- ples averaging 1.0, 1.9, and 6 5% for G. sangujneum, G. uncatenum, and S, trocho~dea,respectively However, epldemlc outbreaks of A. ceratii (20 to 80% hosts parasitized) occurred in G. uncatenum and S. trochoidea on several occasions, wlth peak levels of parasitism associated wlth decreases ~n host abundance. Estimates for paraslte Induced mortality indlcate that A, ceratil 1s capable of removlng a significant fraction of dinoflagellate blomass, with epldemics In the upper estuary cropplng up to 54% of the dominant bloom-forming species, G uncatenum, dally. However, epldemics were usually geo- graphically restncted and of short duration, with dally losses for the 3 host species due to parasitism averaging 1 to 3 % over the summer. Thus, A ceratli appears capable of exerting a controlling Influence on bloonl-form~ngdinoflagellates of the Rhode River only when conditions are suitable for production of epidemlc infections. Interestingly, epidemics falled to occur in multlple d~noflagellatetaxa sunulta- neously, even when alternate host specles were present at hlgh densities. -
Planktonic Ciliate Distribution Relative to a Deep Chlorophyll Maximum: Catalan Sea, N.W
Deco-Sea fkearch I. Vol. 42. No. 11112. DD. 1965-1987. 1995 Copyright 0 1996 !&via Scmce Ltd 0967-0637(95)00092-5 Printed in Great Britain. All rights reserved C967%37/95 $9.5fl+lJ.o(1 Planktonic ciliate distribution relative to a deep chlorophyll maximum: Catalan Sea, N.W. Mediterranean, June 1993 JOHN R. DOLAN* and CELIA MARRASBt (Received 21 October 1994: in revised form 15 May 1995; accepted 3 July 1995) Abstract-Vertical distributions and relative contributions of distinct trophic guilds of ciliates were investigated in an oligotrophic system with a deep chlorophyll maximum (DCM) in early summer. Ciliates were classified as heterotrophic: micro and nano ciliates, tintinnids and predacious forms or photosynthetic: large mixotrophic oligotrichs (Laboea sfrobilia. Tontoniu spp.), and the auto- trophic Mesodinium rubrum. Variability between vertical profiles (O-200 m) was relatively low with station to station differences (C.V.s of -30%) generally larger than temporal (1-4 day) differences (C.V.s of -lS%), for integrated concentrations. Total ciliate biomass, based on volume estimates integrated from O-SO m, averaged - 125 mg C mm’, compared to -35 mg m-’ for chlorophyll a (chl a), yielding a ciliate to chl ratio of 3.6, well within the range of 1 to 6 reported for the euphotic zones of most oceanic systems. Heterotrophic ciliate concentrations were correlated with chl ti concentration (r = 0.83 and 0.82, biomass and cells I-‘, respectively) and averaged -230 cells Il’ in near surface samples (chl a = 0.1 fig I-‘) to -850cells I-’ at 50 m depth, coinciding with the DCM (chl a = I-2pg I-‘). -
The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
A Parasite of Marine Rotifers: a New Lineage of Dinokaryotic Dinoflagellates (Dinophyceae)
Hindawi Publishing Corporation Journal of Marine Biology Volume 2015, Article ID 614609, 5 pages http://dx.doi.org/10.1155/2015/614609 Research Article A Parasite of Marine Rotifers: A New Lineage of Dinokaryotic Dinoflagellates (Dinophyceae) Fernando Gómez1 and Alf Skovgaard2 1 Laboratory of Plankton Systems, Oceanographic Institute, University of Sao˜ Paulo, Prac¸a do Oceanografico´ 191, Cidade Universitaria,´ 05508-900 Butanta,˜ SP, Brazil 2Department of Veterinary Disease Biology, University of Copenhagen, Stigbøjlen 7, 1870 Frederiksberg C, Denmark Correspondence should be addressed to Fernando Gomez;´ [email protected] Received 11 July 2015; Accepted 27 August 2015 Academic Editor: Gerardo R. Vasta Copyright © 2015 F. Gomez´ and A. Skovgaard. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Dinoflagellate infections have been reported for different protistan and animal hosts. We report, for the first time, the association between a dinoflagellate parasite and a rotifer host, tentatively Synchaeta sp. (Rotifera), collected from the port of Valencia, NW Mediterranean Sea. The rotifer contained a sporangium with 100–200 thecate dinospores that develop synchronically through palintomic sporogenesis. This undescribed dinoflagellate forms a new and divergent fast-evolved lineage that branches amongthe dinokaryotic dinoflagellates. 1. Introduction form independent lineages with no evident relation to other dinoflagellates [12]. In this study, we describe a new lineage of The alveolates (or Alveolata) are a major lineage of protists an undescribed parasitic dinoflagellate that largely diverged divided into three main phyla: ciliates, apicomplexans, and from other known dinoflagellates. -
(Alveolata) As Inferred from Hsp90 and Actin Phylogenies1
J. Phycol. 40, 341–350 (2004) r 2004 Phycological Society of America DOI: 10.1111/j.1529-8817.2004.03129.x EARLY EVOLUTIONARY HISTORY OF DINOFLAGELLATES AND APICOMPLEXANS (ALVEOLATA) AS INFERRED FROM HSP90 AND ACTIN PHYLOGENIES1 Brian S. Leander2 and Patrick J. Keeling Canadian Institute for Advanced Research, Program in Evolutionary Biology, Departments of Botany and Zoology, University of British Columbia, Vancouver, British Columbia, Canada Three extremely diverse groups of unicellular The Alveolata is one of the most biologically diverse eukaryotes comprise the Alveolata: ciliates, dino- supergroups of eukaryotic microorganisms, consisting flagellates, and apicomplexans. The vast phenotypic of ciliates, dinoflagellates, apicomplexans, and several distances between the three groups along with the minor lineages. Although molecular phylogenies un- enigmatic distribution of plastids and the economic equivocally support the monophyly of alveolates, and medical importance of several representative members of the group share only a few derived species (e.g. Plasmodium, Toxoplasma, Perkinsus, and morphological features, such as distinctive patterns of Pfiesteria) have stimulated a great deal of specula- cortical vesicles (syn. alveoli or amphiesmal vesicles) tion on the early evolutionary history of alveolates. subtending the plasma membrane and presumptive A robust phylogenetic framework for alveolate pinocytotic structures, called ‘‘micropores’’ (Cavalier- diversity will provide the context necessary for Smith 1993, Siddall et al. 1997, Patterson -
Mixotrophic Protists Among Marine Ciliates and Dinoflagellates: Distribution, Physiology and Ecology
FACULTY OF SCIENCE UNIVERSITY OF COPENHAGEN PhD thesis Woraporn Tarangkoon Mixotrophic Protists among Marine Ciliates and Dinoflagellates: Distribution, Physiology and Ecology Academic advisor: Associate Professor Per Juel Hansen Submitted: 29/04/10 Contents List of publications 3 Preface 4 Summary 6 Sammenfating (Danish summary) 8 สรุป (Thai summary) 10 The sections and objectives of the thesis 12 Introduction 14 1) Mixotrophy among marine planktonic protists 14 1.1) The role of light, food concentration and nutrients for 17 the growth of marine mixotrophic planktonic protists 1.2) Importance of marine mixotrophic protists in the 20 planktonic food web 2) Marine symbiont-bearing dinoflagellates 24 2.1) Occurrence of symbionts in the order Dinophysiales 24 2.2) The spatial distribution of symbiont-bearing dinoflagellates in 27 marine waters 2.3) The role of symbionts and phagotrophy in dinoflagellates with symbionts 28 3) Symbiosis and mixotrophy in the marine ciliate genus Mesodinium 30 3.1) Occurrence of symbiosis in Mesodinium spp. 30 3.2) The distribution of marine Mesodinium spp. 30 3.3) The role of symbionts and phagotrophy in marine Mesodinium rubrum 33 and Mesodinium pulex Conclusion and future perspectives 36 References 38 Paper I Paper II Paper III Appendix-Paper IV Appendix-I Lists of publications The thesis consists of the following papers, referred to in the synthesis by their roman numerals. Co-author statements are attached to the thesis (Appendix-I). Paper I Tarangkoon W, Hansen G Hansen PJ (2010) Spatial distribution of symbiont-bearing dinoflagellates in the Indian Ocean in relation to oceanographic regimes. Aquat Microb Ecol 58:197-213. -
21 Pathogens of Harmful Microalgae
21 Pathogens of Harmful Microalgae RS. Salomon and I. Imai 2L1 Introduction Pathogens are any organisms that cause disease to other living organisms. Parasitism is an interspecific interaction where one species (the parasite) spends the whole or part of its life on or inside cells and tissues of another living organism (the host), from where it derives most of its food. Parasites that cause disease to their hosts are, by definition, pathogens. Although infection of metazoans by other metazoans and protists are the more fre quently studied, there are interactions where both host and parasite are sin gle-celled organisms. Here we describe such interactions involving microal gae as hosts. The aim of this chapter is to review the current status of research on pathogens of harmful microalgae and present future perspec tives within the field. Pathogens with the ability to impair and kill micro algae include viruses, bacteria, fungi and a number of protists (see reviews by Elbrachter and Schnepf 1998; Brussaard 2004; Park et al. 2004; Mayali and Azam 2004; Ibelings et al. 2004). Valuable information exists from non-harm ful microalgal hosts, and these studies will be referred to throughout the text. Nevertheless, emphasis is given to cases where hosts are recognizable harmful microalgae. 21.2 Viruses Viruses and virus-like particles (VLPs) have been found in more than 50 species of eukaryotic microalgae, and several of them have been isolated in laboratory cultures (Brussaard 2004; Nagasaki et al. 2005). These viruses are diverse both in size and genome type, and some of them infect harmful algal bloom (HAB)-causing species (Table 21.1). -
Tuberlatum Coatsi Gen. N., Sp. N. (Alveolata, Perkinsozoa), a New
Protist, Vol. 170, 82–103, February 2019 http://www.elsevier.de/protis Published online date 21 December 2018 ORIGINAL PAPER Tuberlatum coatsi gen. n., sp. n. (Alveolata, Perkinsozoa), a New Parasitoid with Short Germ Tubes Infecting Marine Dinoflagellates 1 Boo Seong Jeon, and Myung Gil Park LOHABE, Department of Oceanography, Chonnam National University, Gwangju 61186, Republic of Korea Submitted October 16, 2018; Accepted December 15, 2018 Monitoring Editor: Laure Guillou Perkinsozoa is an exclusively parasitic group within the alveolates and infections have been reported from various organisms, including marine shellfish, marine dinoflagellates, freshwater cryptophytes, and tadpoles. Despite its high abundance and great genetic diversity revealed by recent environmental rDNA sequencing studies, Perkinsozoa biodiversity remains poorly understood. During the intensive samplings in Korean coastal waters during June 2017, a new parasitoid of dinoflagellates was detected and was successfully established in culture. The new parasitoid was most characterized by the pres- ence of two to four dome-shaped, short germ tubes in the sporangium. The opened germ tubes were biconvex lens-shaped in the top view and were characterized by numerous wrinkles around their open- ings. Phylogenetic analyses based on the concatenated SSU and LSU rDNA sequences revealed that the new parasitoid was included in the family Parviluciferaceae, in which all members were comprised of two separate clades, one containing Parvilucifera species (P. infectans, P. corolla, and P. rostrata), and the other containing Dinovorax pyriformis, Snorkelia spp., and the new parasitoid from this study. Based on morphological, ultrastructural, and molecular data, we propose to erect a new genus and species, Tuberlatum coatsi gen. -
October-2009-Inoculum.Pdf
Supplement to Mycologia Vol. 60(5) October 2009 Newsletter of the Mycological Society of America — In This Issue — Feature Article Fungal zoospores are valuable food Fungal zoospores are valuable food resources in aquatic ecosystems resources in aquatic ecosystems MSA Business President’s Corner By Frank H. Gleason, Maiko Kagami, Secretary’s Email Express Agostina V. Marano and Telesphore Simi-Ngando MSA Officers 2009 –2010 MSA 2009 Annual Reports Fungal zoospores are known to contain large quantities Minutes of the 2009 MSA Annual Council Meeting Minutes of the MSA 2009 Annual Business Meeting of glycogen and lipids in the form of endogenous reserves. MSA 2009 Award Winners Lipids are considered to be high energy compounds, some of MSA 2009 Abstracts (Additional) which are important for energy storage. Lipids can be con - Mycological News A North American Flora for Mushroom-Forming Fungi tained in membrane bound vesicles called lipid globules Marine Mycology Class which can easily be seen in the cytoplasm of fungal Mycohistorybytes Peripatetic Mycology zoospores with both the light and electron microscopes Student Research Opportunities in Thailand (Munn et al . 1981; Powell 1993; Barr 2001). Koch (1968) MSA Meeting 2010 MycoKey version 3.2 and Bernstein (1968) both noted variation in the size and MycoRant numbers of lipoid globules within zoospores in the light mi - Dr Paul J Szaniszlo croscope. The ultrastructure of the lipid globule complex Symposium : Gondwanic Connections in Fungi Mycologist’s Bookshelf was carefully examined by Powell and Roychoudhury A Preliminary Checklist of Micromycetes in Poland (1992). Fungal Pathogenesis in Plants and Crops Pathogenic Fungi in the Cryphonectriaceae Preliminary studies reviewed by Cantino and Mills Recently Received Books (1976) revealed a rich supply of lipids in the cells of Blasto - Take a Break cladiella emersonii . -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D.