Chapter 8 Synthesis for All Taxa
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Molecular Phylogenetic Evidence That the Chinese Viviparid Genus Margarya (Gastropoda: Viviparidae) Is Polyphyletic
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Springer - Publisher Connector Article SPECIAL ISSUE June 2013 Vol.58 No.18: 21542162 Adaptive Evolution and Conservation Ecology of Wild Animals doi: 10.1007/s11434-012-5632-y Molecular phylogenetic evidence that the Chinese viviparid genus Margarya (Gastropoda: Viviparidae) is polyphyletic DU LiNa1, YANG JunXing1*, RINTELEN Thomas von2*, CHEN XiaoYong1 & 3 ALDRIDGE David 1 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China; 2 Museum für Naturkunde, Leibniz-Institut für Evolutions- und Biodiversitätsforschung an der Humboldt-Universität zu Berlin, Berlin 10115, Germany; 3 Aquatic Ecology Group, Department of Zoology, Cambridge University, Downing Street, Cambridge CB2 3EJ, UK Received February 28, 2012; accepted May 25, 2012; published online February 1, 2013 We investigated the phylogeny of the viviparid genus Margarya, endemic to Yunnan, China, using two mitochondrial gene frag- ments (COI and 16S rRNA). The molecular phylogeny based on the combined dataset indicates that Margarya is polyphyletic, as two of the three well-supported clades containing species of Margarya also comprise species from other viviparid genera. In one clade, sequences of four species of Margarya even cluster indiscriminately with those of two species of Cipangopaludina, indi- cating that the current state of Asian viviparid taxonomy needs to be revised. Additionally, these data suggest that shell evolution in viviparids is complex, as even the large and strongly sculptured shells of Margarya, which are outstanding among Asian viviparids, can apparently be easily converted to simple smooth shells. -
Chapter 6 Crabs
Chapter 6. Freshwater crabs of Africa: diversity, distribution, and conservation. Cumberlidge, N.¹ ¹ Department of Biology, Northern Michigan University, Marquette, Michigan 49855, USA The Purple March Crab Afrithelphusa monodosa (Endangered) which lives in swamps and year-round wetland habitats in north-western Guinea where it is known from only a few specimens from two localities. This species is clearly a competent air-breather and has a pair of well-developed pseudolungs. It is mainly threatened by habitat loss and degradation. © PIOTR NASKREKI An unidentifi ed freshwater crab species within the family Potamonautes. This specimen was collected in central Africa, a region noted for its limited fi eld sampling. © DENIS TWEDDLE IUCN AFR2011_pp178-199_chapter 6_crabs V2.indd 178 4/3/11 18:59:15 The Purple March Crab Afrithelphusa monodosa (Endangered) which lives in swamps and year-round wetland habitats in north-western Guinea. © PIOTR NASKREKI Potamonautes lirrangensis (Least Concern), a relatively abundant and widespread species found in large slow fl owing rivers in rainforests across central and eastern Africa. © DENIS TWEDDLE CONTENTS 6.1 Overview of the African freshwater crab fauna 180 6.1.1 Biogeographic patterns 182 6.2 Conservation status 183 6.3 Patterns of species richness 184 6.3.1 All freshwater crab species: interpretation of distribution patterns 186 6.3.2 Threatened species 187 6.3.3 Restricted range species 188 6.3.4 Data Defi cient species 190 6.4 Major threats 191 6.4.1 Habitat destruction 191 6.4.2 Pollution 192 6.4.3 -
Ecological Correlates of Species Differences in the Lake Tanganyika Crab Radiation
UvA-DARE (Digital Academic Repository) Ecological correlates of species differences in the Lake Tanganyika crab radiation Marijnissen, S.A.E.; Michel, E.; Kamermans, M.; Olaya-Bosch, K.; Kars, M.; Cleary, D.F.R.; van Loon, E.E.; Rachello Dolmen, P.G.; Menken, S.B.J. DOI 10.1007/s10750-008-9566-y Publication date 2008 Published in Hydrobiologia Link to publication Citation for published version (APA): Marijnissen, S. A. E., Michel, E., Kamermans, M., Olaya-Bosch, K., Kars, M., Cleary, D. F. R., van Loon, E. E., Rachello Dolmen, P. G., & Menken, S. B. J. (2008). Ecological correlates of species differences in the Lake Tanganyika crab radiation. Hydrobiologia, 615(1), 81-94. https://doi.org/10.1007/s10750-008-9566-y General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:26 Sep 2021 DOI:10.1007/s10750-008-9566-y SPECIATION IN ANCIENT LAKES Ecological correlates of species differences in the Lake Tanganyika crab radiation Saskia A. -
Eco-Ethology of Shell-Dwelling Cichlids in Lake Tanganyika
ECO-ETHOLOGY OF SHELL-DWELLING CICHLIDS IN LAKE TANGANYIKA THESIS Submitted in Fulfilment of the Requirements for the Degree of MASTER OF SCIENCE of Rhodes University by IAN ROGER BILLS February 1996 'The more we get to know about the two greatest of the African Rift Valley Lakes, Tanganyika and Malawi, the more interesting and exciting they become.' L.C. Beadle (1974). A male Lamprologus ocel/alus displaying at a heterospecific intruder. ACKNOWLEDGMENTS The field work for this study was conducted part time whilst gworking for Chris and Jeane Blignaut, Cape Kachese Fisheries, Zambia. I am indebted to them for allowing me time off from work, fuel, boats, diving staff and equipment and their friendship through out this period. This study could not have been occured without their support. I also thank all the members of Cape Kachese Fisheries who helped with field work, in particular: Lackson Kachali, Hanold Musonda, Evans Chingambo, Luka Musonda, Whichway Mazimba, Rogers Mazimba and Mathew Chama. Chris and Jeane Blignaut provided funds for travel to South Africa and partially supported my work in Grahamstown. The permit for fish collection was granted by the Director of Fisheries, Mr. H.D.Mudenda. Many discussions were held with Mr. Martin Pearce, then the Chief Fisheries Officer at Mpulungu, my thanks to them both. The staff of the JLB Smith Institute and DIFS (Rhodes University) are thanked for help in many fields: Ms. Daksha Naran helped with computing and organisation of many tables and graphs; Mrs. S.E. Radloff (Statistics Department, Rhodes University) and Dr. Horst Kaiser gave advice on statistics; Mrs Nikki Kohly, Mrs Elaine Heemstra and Mr. -
Lake Tanganyika Strategic Action Programme
,,,,/ The Strategic Action Programme for the Protection of Biodiversity and Sustainable Management of the Natural Resources of Lake Tanganyika and its Basin November 2010 1 Page for Signature 2 Contents ACKNOWLEDGMENTS ............................................................................................................................. 5 FOREWORD ............................................................................................................................................. 6 EXECUTIVE SUMMARY ............................................................................................................................. 8 ABBREVIATIONS AND ACRONYMS .......................................................................................................... 9 GLOSSARY OF TERMS ............................................................................................................................ 12 1 INTRODUCTION .................................................................................................................. 15 1.1 NEED FOR JOINT ACTION - SHARED RESOURCES IN LAKE TANGANYIKA AND ITS BASIN ............................ 15 1.1.1 The Lake Tanganyika and its Basin .................................................................................. 15 1.1.2 The People ....................................................................................................................... 16 1.1.3 Causes of Threats to Biodiversity and Sustainable Use of Natural Resources in the Lake Basin 18 1.1.4 Previous Projects -
Molecular Evidence for Recent Divergence of Lake Tanganyika Endemic Crabs (Decapoda: Platythelphusidae)
ARTICLE IN PRESS Molecular Phylogenetics and Evolution xxx (2006) xxx–xxx www.elsevier.com/locate/ympev Short communication Molecular evidence for recent divergence of Lake Tanganyika endemic crabs (Decapoda: Platythelphusidae) Saskia A.E. Marijnissen a,¤, Ellinor Michel b, Savel R. Daniels c, Dirk Erpenbeck d, Steph B.J. Menken a, Frederick R. Schram e a Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, 1090 GT Amsterdam, The Netherlands b Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, UK c Department of Botany and Zoology, University of Stellenbosch, Private Bag X1, Matieland 7602, South Africa d Queensland Centre for Biodiversity, Queensland Museum, Brisbane, Qld. 4101, Australia e Department of Biology, University of Washington, Seattle, WA 98195, USA Received 13 September 2005; revised 9 March 2006; accepted 10 March 2006 1. Introduction occupy much broader geographical ranges but show lim- ited morphological diVerentiation (e.g., Bott, 1955; Cumb- The East African Rift lakes are renowned as hotspots of erlidge, 1999). Several species of Platythelphusa exhibit endemism and as exemplary settings for studies on processes morphological characters that are considered atypical for that generate biodiversity (Lowe-McConnell, 2003 and refer- freshwater crabs, but are instead reminiscent of marine ences therein). The cichlids in the East African lakes have ancestry (von Sternberg and Cumberlidge, 1999). These received considerable scientiWc attention, leading to an unusual morphological features prompted the suggestion increase of our understanding of the phylogenetic relation- that platythelphusids are among the most primitive of the ships of these Wsh, as well as of the mechanisms underlying extant species of African freshwater crabs. -
International Agenda for Botanic Gardens in Conservation
Journal of Botanic Gardens Conservation International BGjournalVolume 3 • Number 1 • January 2006 The International Agenda – five years on Forthcoming APPLIED PLANT CONSERVATION Meetings March 20 – 31, 2006 CURITIBA, BRAZIL 8th Ordinary Meeting of the Conference of the Parties to the Convention on Biological Diversity Issues for in-depth consideration are island biodiversity, biological diversity of dry and sub- 2nd ANNUAL humid lands, the Global Taxonomy Initiative, access and benefit-sharing and communication, TRAINING PROGRAM AND INTERNSHIP education and public awareness. For more information, visit the http://www.biodiv.org/doc/ meeting.aspx?mtg=COP-08 PRESENTED BY: DENVER BOTANIC GARDENS, CENTER FOR PLANT CONSERVATION June 19 - 25, 2006 SANTO DOMINGO, DOMINICAN REPUBLIC and UNITED STATES BOTANIC GARDEN IX Congress of the Latin American Botanical Society (IX Congreso Latinoamericano de Botánica) Contribuyendo al conocimiento global de la flora nativa latinoamericana (Contributing to the global knowledge of the native flora of Latin America) The objectives of this Congress are to spread JUNE 6-10, 2006: JUNE 12-16, 2006: JUNE 6 – AUGUST 5, 2006: information about the flora of Latin America and bring CPC APPLIED PLANT PLANT CONSERVATION IN NINE-WEEK PAID together the botanical community to develop plans for the conservation and sustainable use of its flora. CONSERVATION TRAINING BOTANIC GARDENS SUMMER INTERNSHIP Seminar registration is due Application deadline is For further information, please contact Sonia April 21, 2006. March 1, 2006. Lagos-Witte, President Asociación Latinoamericano Admission is competitive. de Botánica - ALB and Coordinator, IX Congreso Latinoamericano de Botánica, Jardín Botánico Nacional, Apartado Postal 21-9, Santo Domingo, Dominican Republic. -
Multilocus Phylogeny of the Afrotropical Freshwater Crab Fauna Reveals Historical Drainage Connectivity and Transoceanic Dispersal Since the Eocene
Syst. Biol. 64(4):549–567, 2015 © The Author(s) 2015. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: [email protected] DOI:10.1093/sysbio/syv011 Advance Access publication February 3, 2015 Multilocus Phylogeny of the Afrotropical Freshwater Crab Fauna Reveals Historical Drainage Connectivity and Transoceanic Dispersal Since the Eocene ,∗ , SAV E L R. DANIELS1 ,ETHEL E. PHIRI1,SEBASTIAN KLAUS2 3,CHRISTIAN ALBRECHT4, AND NEIL CUMBERLIDGE5 1Department of Botany and Zoology, Private Bag X1, University of Stellenbosch, Matieland 7602, South Africa; 2Department of Ecology and Evolution, J. W. Goethe-University, Biologicum, Frankfurt am Main 60438, Germany; 3Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, Peoples Republic of China; 4Department of Animal Ecology and Systematics, Justus Liebig University, Giessen 35392, Germany; and 5Department of Biology, Northern Michigan University, Marquette, MI 49855-5376, USA ∗ Correspondence to be sent to: Department of Botany and Zoology, Private Bag X1, University of Stellenbosch, Matieland 7602, South Africa; E-mail: mailto:[email protected] Received 15 November 2014; reviews returned 22 December 2014; accepted 28 January 2015 Associate Editor: Adrian Paterson Abstract.—Phylogenetic reconstruction, divergence time estimations and ancestral range estimation were undertaken for 66% of the Afrotropical freshwater crab fauna (Potamonautidae) based on four partial DNA loci (12S rRNA, 16S rRNA, cytochrome oxidase one [COI], and histone 3). The present study represents the most comprehensive taxonomic sampling of any freshwater crab family globally, and explores the impact of paleodrainage interconnectivity on cladogenesis among freshwater crabs. Phylogenetic analyses of the total evidence data using maximum-likelihood (ML), maximum parsimony (MP), and Bayesian inference (BI) produced a robust statistically well-supported tree topology that reaffirmed the monophyly of the Afrotropical freshwater crab fauna. -
FRESHWATER CRABS in AFRICA MICHAEL DOBSON Dr M
CORE FRESHWATER CRABS IN AFRICA 3 4 MICHAEL DOBSON FRESHWATER CRABS IN AFRICA In East Africa, each highland area supports endemic or restricted species (six in the Usambara Mountains of Tanzania and at least two in each of the brought to you by MICHAEL DOBSON other mountain ranges in the region), with relatively few more widespread species in the lowlands. Recent detailed genetic analysis in southern Africa Dr M. Dobson, Department of Environmental & Geographical Sciences, has shown a similar pattern, with a high diversity of geographically Manchester Metropolitan University, Chester St., restricted small-bodied species in the main mountain ranges and fewer Manchester, M1 5DG, UK. E-mail: [email protected] more widespread large-bodied species in the intervening lowlands. The mountain species occur in two widely separated clusters, in the Western Introduction Cape region and in the Drakensburg Mountains, but despite this are more FBA Journal System (Freshwater Biological Association) closely related to each other than to any of the lowland forms (Daniels et Freshwater crabs are a strangely neglected component of the world’s al. 2002b). These results imply that the generally small size of high altitude inland aquatic ecosystems. Despite their wide distribution throughout the species throughout Africa is not simply a convergent adaptation to the provided by tropical and warm temperate zones of the world, and their great diversity, habitat, but evidence of ancestral relationships. This conclusion is their role in the ecology of freshwaters is very poorly understood. This is supported by the recent genetic sequencing of a single individual from a nowhere more true than in Africa, where crabs occur in almost every mountain stream in Tanzania that showed it to be more closely related to freshwater system, yet even fundamentals such as their higher taxonomy mountain species than to riverine species in South Africa (S. -
"The Status and Distribution of Freshwater Crabs [Central Africa]" Neil Cumberlidge Northern Michigan University
Northern Michigan University The Commons Book Sections/Chapters 2011 "The status and distribution of freshwater crabs [Central Africa]" Neil Cumberlidge Northern Michigan University Follow this and additional works at: http://commons.nmu.edu/facwork_bookchapters Part of the Biology Commons Recommended Citation Cumberlidge N. 2011. Chapter 6. The ts atus and distribution of freshwater crabs, pp. 71-78. In: Brooks, E.G.E., Allen, D.J. and Darwall, W.R.T. (Compilers). 2011. The tS atus and Distribution of Freshwater Biodiversity in Central Africa. Gland, Switzerland and Cambridge, UK: IUCN: i-ix+140pp. This Book Section/Chapter is brought to you for free and open access by The ommonC s. It has been accepted for inclusion in Book Sections/Chapters by an authorized administrator of The ommonC s. For more information, please contact [email protected],[email protected], [email protected], [email protected]. Chapter 6. Freshwater crabs of Africa: diversity, distribution, and conservation. Cumberlidge, N.¹ ¹ Department of Biology, Northern Michigan University, Marquette, Michigan 49855, USA The Purple March Crab Afrithelphusa monodosa (Endangered) which lives in swamps and year-round wetland habitats in north-western Guinea where it is known from only a few specimens from two localities. This species is clearly a competent air-breather and has a pair of well-developed pseudolungs. It is mainly threatened by habitat loss and degradation. © PIOTR NASKREKI An unidentifi ed freshwater crab species within the family Potamonautes. This specimen was collected in central Africa, a region noted for its limited fi eld sampling. © DENIS TWEDDLE The Purple March Crab Afrithelphusa monodosa (Endangered) which lives in swamps and year-round wetland habitats in north-western Guinea. -
Characterizing Molluscan Shell Accumulations: Ecological, Depositional and Taphonomic Variations on the Northern Luiche River Platform
Characterizing Molluscan Shell Accumulations: Ecological, Depositional and Taphonomic Variations on the Northern Luiche River Platform Students: Oceana S. Castañeda (Dartmouth College) Christine S. O’Connell (Stanford University) Mentors: Ellinor Michel and Mike Soreghan Introduction Shell gravel deposits represent geologic facies that persist into deep time as well as unique modern ecological habitats (Kidwell, 1986). Lake Tanganyika, East Africa, is home to numerous distinct facies and habitat types and provides a potential model system for understanding shell beds on a wider scale. In this ancient rift lake shell gravel occurs along axial, hinged and accommodation zone margins and seems to be particularly extensive near the mouths of relatively large rivers (Soreghan and Cohen, 1996). In the Kigoma region shell beds exist both on high-energy headlands and also blanketing the low-energy Luiche River delta platform (McGlue, et. al, 2005). However, little is understood about the mechanism by which these deposits may have formed. Examination of the northern Luiche River delta’s shell gravel has the potential to suggest a formation mechanism for these shell lags. Lake Tanganyika houses a robust sedimentary record that can be used to understand past changes in paleoenvironmental dynamics, land use and lake chemistry. However, accurate interpretation of the sedimentation record depends directly on an accurate understanding and interpretation of modern sedimentation patterns and mechanisms. The first step in understanding the depositional mechanism for the Luiche delta shell beds is to determine the source of the shell material. Lake Tanganyika’s shell beds consist primarily of the bivalve genus Caelatura and the endemic gastropod species Neothauma tanganyicense, both of which are poorly understood ecologically. -
Zootaxa, Taxonomy and Biogeography of the Freshwater
ZOOTAXA 1262 Taxonomy and biogeography of the freshwater crabs of Tanzania, East Africa (Brachyura: Potamoidea: Potamonautidae, Platythelphusidae, Deckeniidae) SADIE K. REED & NEIL CUMBERLIDGE Magnolia Press Auckland, New Zealand SADIE K. REED & NEIL CUMBERLIDGE Taxonomy and biogeography of the freshwater crabs of Tanzania, East Africa (Brachyura: Potamoidea: Potamonautidae, Platythelphusidae, Deckeniidae) (Zootaxa 1262) 139 pp.; 30 cm. 17 July 2006 ISBN 1-877407-81-X (paperback) ISBN 1-877407-82-8 (Online edition) FIRST PUBLISHED IN 2006 BY Magnolia Press P.O. Box 41383 Auckland 1030 New Zealand e-mail: [email protected] http://www.mapress.com/zootaxa/ © 2006 Magnolia Press All rights reserved. No part of this publication may be reproduced, stored, transmitted or disseminated, in any form, or by any means, without prior written permission from the publisher, to whom all requests to reproduce copyright material should be directed in writing. This authorization does not extend to any other kind of copying, by any means, in any form, and for any purpose other than private research use. ISSN 1175-5326 (Print edition) ISSN 1175-5334 (Online edition) Zootaxa 1262: 1–139 (2006) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 1262 Copyright © 2006 Magnolia Press ISSN 1175-5334 (online edition) Taxonomy and biogeography of the freshwater crabs of Tanzania, East Africa (Brachyura: Potamoidea: Potamonautidae, Platythelphusidae, Deckeniidae) SADIE K. REED1 & NEIL CUMBERLIDGE2 1 Department of Biology, 185 ASEC-W, University of Akron, Akron, OH 44325-3908, USA 2 Department of Biology, Northern Michigan University, Marquette, Michigan 49855-5301, USA. TABLE OF CONTENTS Abstract . 4 Introduction . 5 Materials and methods .