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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
Patterns of Reef Fish Larval Supply to Petroleum Platforms in the Northern Gulf of Mexico
Louisiana State University LSU Digital Commons LSU Historical Dissertations and Theses Graduate School 2001 Patterns of Reef Fish Larval Supply to Petroleum Platforms in the Northern Gulf of Mexico. James Marvin Tolan Louisiana State University and Agricultural & Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_disstheses Recommended Citation Tolan, James Marvin, "Patterns of Reef Fish Larval Supply to Petroleum Platforms in the Northern Gulf of Mexico." (2001). LSU Historical Dissertations and Theses. 438. https://digitalcommons.lsu.edu/gradschool_disstheses/438 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Historical Dissertations and Theses by an authorized administrator of LSU Digital Commons. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand comer and continuing from left to right in equal sections with small overlaps. -
Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes
Old Dominion University ODU Digital Commons Biological Sciences Theses & Dissertations Biological Sciences Summer 2016 Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes Christi Linardich Old Dominion University, [email protected] Follow this and additional works at: https://digitalcommons.odu.edu/biology_etds Part of the Biodiversity Commons, Biology Commons, Environmental Health and Protection Commons, and the Marine Biology Commons Recommended Citation Linardich, Christi. "Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes" (2016). Master of Science (MS), Thesis, Biological Sciences, Old Dominion University, DOI: 10.25777/hydh-jp82 https://digitalcommons.odu.edu/biology_etds/13 This Thesis is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES by Christi Linardich B.A. December 2006, Florida Gulf Coast University A Thesis Submitted to the Faculty of Old Dominion University in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE BIOLOGY OLD DOMINION UNIVERSITY August 2016 Approved by: Kent E. Carpenter (Advisor) Beth Polidoro (Member) Holly Gaff (Member) ABSTRACT HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES Christi Linardich Old Dominion University, 2016 Advisor: Dr. Kent E. Carpenter Understanding the status of species is important for allocation of resources to redress biodiversity loss. -
Reporte De Hypoplectrus Randallorum (Pisces: Serranidae)
Centro de Investigaciones Marinas Universidad de La Habana ARTICULO ORIGINAL Reporte de Hypoplectrus randallorum (Pisces: Serranidae) en aguas cubanas Report of Hypoplectrus randallorum (Pisces: Serranidae) Miraysis Noda Redonet 1* in cuban waters Pedro P. Chevalier Monteagudo1___ Mileidy Soto Vázquez1 Yusimí Alfonso Sánchez1 Lisset Morales Hernández1 1 Acuario Nacional de Cuba, Ave 1ra, Resumen No. 4608, entre 46 y 60, Playa, CP 11300, La Habana, Cuba. Se registra por vez primera en Cuba la especie Hypoplectrus randallorum y se actualiza la lista de especies de este género. Aunque existen evidencias fotográficas y datos ecológicos de la presencia de Hypoplectrus randallorum Lobel, 2011 en tres localidades del archipié- lago cubano, no existían ejemplares de referencia en colecciones científicas procedentes de Cuba. Un ejemplar de se capturó en el litoral de La Habana en formacio- * Autor para correspondencia: H. randallorum [email protected] nes arrecifales de tipo camellones a una profundidad de 18 metros. Se presenta una breve descripción del ejemplar. Palabras clave: colecciones científicas, Cuba, especies, peces arrecifales, taxono- mía Abstract The speciesHypoplectrus randallorum is registered for Cuba for the first time and the list of species of this genus is updated. Although there are photographic evidence and ecologi- OPEN ACCESS cal data of the presence of Hypoplectrus randallorum Lobel, 2011, in three locations in the Distribuido bajo: Cuban archipelago, there were no reference specimens in scientific collections from Cuba. Creative Commons CC-BY 4.0 A specimen of H. randallorum was captured on the coast of Havana in spur and groove Editor: coral reef at a depth of 18 meters. A brief description of the specimen is presented. -
Andrew David Dorka Cobián Rojas Felicia Drummond Alain García Rodríguez
CUBA’S MESOPHOTIC CORAL REEFS Fish Photo Identification Guide ANDREW DAVID DORKA COBIÁN ROJAS FELICIA DRUMMOND ALAIN GARCÍA RODRÍGUEZ Edited by: John K. Reed Stephanie Farrington CUBA’S MESOPHOTIC CORAL REEFS Fish Photo Identification Guide ANDREW DAVID DORKA COBIÁN ROJAS FELICIA DRUMMOND ALAIN GARCÍA RODRÍGUEZ Edited by: John K. Reed Stephanie Farrington ACKNOWLEDGMENTS This research was supported by the NOAA Office of Ocean Exploration and Research under award number NA14OAR4320260 to the Cooperative Institute for Ocean Exploration, Research and Technology (CIOERT) at Harbor Branch Oceanographic Institute-Florida Atlantic University (HBOI-FAU), and by the NOAA Pacific Marine Environmental Laboratory under award number NA150AR4320064 to the Cooperative Institute for Marine and Atmospheric Studies (CIMAS) at the University of Miami. This expedition was conducted in support of the Joint Statement between the United States of America and the Republic of Cuba on Cooperation on Environmental Protection (November 24, 2015) and the Memorandum of Understanding between the United States National Oceanic and Atmospheric Administration, the U.S. National Park Service, and Cuba’s National Center for Protected Areas. We give special thanks to Carlos Díaz Maza (Director of the National Center of Protected Areas) and Ulises Fernández Gomez (International Relations Officer, Ministry of Science, Technology and Environment; CITMA) for assistance in securing the necessary permits to conduct the expedition and for their tremendous hospitality and logistical support in Cuba. We thank the Captain and crew of the University of Miami R/V F.G. Walton Smith and ROV operators Lance Horn and Jason White, University of North Carolina at Wilmington (UNCW-CIOERT), Undersea Vehicle Program for their excellent work at sea during the expedition. -
Concentración Y Tiempo Máximo De Exposición De Juveniles De Pargo
State of research of the Osteichthyes fish related to coral reefs in the Honduran Caribbean with catalogued records Estado del conocimiento de los peces osteíctios asociados a los arrecifes de coral en el Caribe de Honduras, con registros catalogados Anarda Isabel Salgado Ordoñez1, Julio Enrique Mérida Colindres1* & Gustavo Adolfo Cruz1 ABSTRACT Research on Honduran coral reef fish has been isolated and scattered. A list of fish species related to coral reefs was consolidated to establish a compiled database with updated taxonomy. The study was conducted between October 2017 and December 2018. Using primary and secondary sources, all potential species in the Western Atlantic were considered, and their actual presence was confirmed using catalogued records published in peer-reviewed journals that included Honduras. In addition, the specimens kept in the Museum of Natural History of Universidad Nacional Autónoma de Honduras were added. Once the list was consolidated, the taxonomic status of each species was updated based on recent literature. A total of 159 species and 76 genera were registered in 32 families. The family with the most species was Labrisomidae with 27 species (17%). Five families had more than five 5 genera registered, while four 4 were represented by more than 16 species, which is equivalent to 42% genera and 51% species. Gobiidae was represented by 10 genera (13%) and 21 species (13%), of which two 2 were endemic: Tigrigobius rubrigenis and Elacatinus lobeli. In turn, Grammatidae was represented by one endemic species Lipogramma idabeli (1.8%). The species Diodon holocanthus and Sphoeroides testudineus represent the first catalogued records for Honduras. -
Hypoplectrus Chlorurus (Yellowtail Hamlet)
UWI The Online Guide to the Animals of Trinidad and Tobago Diversity Hypoplectrus chlorurus (Yellowtail Hamlet) Family: Serranidae (Groupers and Sea Basses) Order: Perciformes (Perch and Allied Fish) Class: Actinopterygii (Ray-finned Fish) Fig. 1. Yellowtail hamlet, Hypoplectrus chlorurus. [http://biogeodb.stri.si.edu/caribbean/en/pages/random/8450, downloaded 9 October 2016] TRAITS. Hypoplectrus chlorurus is commonly known as the yellowtail hamlet (Fig. 1) as it has a distinctive bright yellow caudal (rear) fin, with brown to bluish coloration that may be visible on the black body (Froese, 2016). They can grow to lengths ranging from 8-13cm and are hermaphrodites, this means each fish has both male and female sex organs (Reefguide, 2016). The yellowtail hamlet is a solitary species (IUCN, 2015), that evades predators by taking cover in nearby holes in reefs. DISTRIBUTION. It could generally be found in the southern Caribbean (Fig. 2) in countries such as Cuba, Haiti, Puerto Rico, Bahamas, Barbados and Tobago to name a few (IUCN, 2015). HABITAT AND ECOLOGY. The yellowtail hamlet could be found in the waters with a depth of approximately 10-76m (Aguilar-Perera, 2003), where there is an abundance of coral and rocky reefs. It consumes crustaceans such as crabs and shrimps in addition to small fish (IUCN, 2015), UWI The Online Guide to the Animals of Trinidad and Tobago Diversity by use of aggressive mimicry. This means the yellowtail hamlet behaves like a nearby herbivore to get closer to their prey (Robertson, 2013). REPRODUCTION. Yellowtail hamlets are said to be synchronous hermaphrodites, with both fish acting in turns as male and female during spawning (IUCN, 2015). -
Alikes Among Tropical Reef Fishes
Who Resembles Whom? Mimetic and Coincidental Look- Alikes among Tropical Reef Fishes D. Ross Robertson* Smithsonian Tropical Research Institute, Balboa, Republic of Panama´ Abstract Studies of mimicry among tropical reef-fishes usually give little or no consideration to alternative explanations for behavioral associations between unrelated, look-alike species that benefit the supposed mimic. I propose and assess such an alternative explanation. With mimicry the mimic resembles its model, evolved to do so in response to selection by the mimicry target, and gains evolved benefits from that resemblance. In the alternative, the social-trap hypothesis, a coincidental resemblance of the model to the ‘‘mimic’’ inadvertently attracts the latter to it, and reinforcement of this social trapping by learned benefits leads to the ‘‘mimic’’ regularly associating with the model. I examine three well known cases of supposed aggressive mimicry among reef-fishes in relation to nine predictions from these hypotheses, and assess which hypothesis offers a better explanation for each. One case, involving precise and complex morphological and behavioral resemblance, is strongly consistent with mimicry, one is inconclusive, and one is more consistent with a social- trap based on coincidental, imprecise resemblance. Few cases of supposed interspecific mimicry among tropical reef fishes have been examined in depth, and many such associations may involve social traps arising from generalized, coincidental resemblance. Mimicry may be much less common among these fishes than is generally thought. Citation: Robertson DR (2013) Who Resembles Whom? Mimetic and Coincidental Look-Alikes among Tropical Reef Fishes. PLoS ONE 8(1): e54939. doi:10.1371/ journal.pone.0054939 Editor: David L. -
Catalog of Fishes December 2015 Errata
Catalog of Fishes December 2015 Errata Please note that I no longer actively search for errors – Dennis Polack FishWise saxatilis, Chauliocheilos Martins [F. O.], Andrade [B. N.], Rosa [A. C.] & Langeani [F.] 2014:195, Figs. 1-3 [Ichthyological Exploration of Freshwaters v. 25 (no. 3); ref. 33629] Minas Gerais State, Itamarandiba, stream of headwaters of rio Itamarandiba, rio Jequitinhonha drainage, 18°05'48"S, 43°00'19 W, Brazil. Holotype: DZSJRP 19157. Paratypes: AMNH, DZSJRP, MCP, MZUEL, MZUSP. •Valid as Chauliocheilos saxatilis Martins, Andrade, Rosa & Langeani 2014. Current status: Valid as Chauliocheilos. Loricariidae: Hypoptopomatinae. Distribution: Rio Itamarandiba River, southern Brazil. Habitat: freshwater. Valid as Chauliocheilos saxatilis Martins, Andrade, Rosa & Langeani 2014 : orientalis, Coregonus sardinella Kirillov [F. N.] 1972:100 [Fishes of Yakutia; ref. 7259] Holotype. Reference not seen. •Synonym of Coregonus sardinella Valencienned 1848 -- (Parin et al. 2014:124 [ref. 33547]).Current status: Synonym of Coregonus sardinella Valenciennes 1848. Salmonidae: Coregoninae. Distribution: Oleneck, Lena, Yana, Indigirka and Kolyma, Russia. Habitat: freshwater. Valenciennes : cephalus, Gobiesox Lacepède [B. G. E.] (ex Plumier) 1800:595, 596, Pl. 19 (fig. 1) [Histoire naturelle des poissons (Lacepéde) v. 2; ref. 2709] Amérique méridionale [Central America]. No types known. Based on the 'Cephalus fluviatilis major' in manuscript description of Plumier (Charles Plumier, 1646-1704, French explorer and botanist). Also appeared in Sonnini 1803:279, 280 (vol. 7) [ref. 30473]. See account of Cyclopterus nudus Linnaeus 1758. •Wrongly a synonym of Gobiesox nudus (Linnaeus 1758) based on misapplication by Briggs -- (Briggs 1955:94 [ref. 637], Ferraris in Reis et al. 2003:512 [ref. 27061]). •Vald as Gobiesox cephalus Lacepède 1800 -- (Frernholm & Wheeler 1983:271 [ref. -
Identifying Marine Key Biodiversity Areas in the Greater Caribbean Region
Old Dominion University ODU Digital Commons Biological Sciences Theses & Dissertations Biological Sciences Summer 2018 Identifying Marine Key Biodiversity Areas in the Greater Caribbean Region Michael S. Harvey Old Dominion University, [email protected] Follow this and additional works at: https://digitalcommons.odu.edu/biology_etds Part of the Biodiversity Commons, Biology Commons, and the Natural Resources and Conservation Commons Recommended Citation Harvey, Michael S.. "Identifying Marine Key Biodiversity Areas in the Greater Caribbean Region" (2018). Master of Science (MS), Thesis, Biological Sciences, Old Dominion University, DOI: 10.25777/45bp-0v85 https://digitalcommons.odu.edu/biology_etds/32 This Thesis is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. IDENTIFYING MARINE KEY BIODIVERSITY AREAS IN THE GREATER CARIBBEAN REGION by Michael S. Harvey B.A. May 2013, Old Dominion University A Thesis Submitted to the Faculty of Old Dominion University in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE BIOLOGY OLD DOMINION UNIVERSITY August 2018 Approved by: Kent E. Carpenter (Advisor) Beth Polidoro (Member) Sara Maxwell (Member) ABSTRACT IDENTIFYING MARINE KEY BIODIVERSITY AREAS IN THE GREATER CARIBBEAN REGION Michael S. Harvey Old Dominion University, 2018 Advisor: Dr. -
Baseline Multispecies Coral Reef Fish Stock Assessment for the Dry Tortugas
NOAA Technical Memorandum NMFS-SEFSC-487 Baseline Multispecies Coral Reef Fish Stock Assessment for the Dry Tortugas Jerald S. Ault, Steven G. Smith, Geoffrey A. Meester, Jiangang Luo, James A. Bohnsack, and Steven L. Miller U.S. Department of Commerce National Oceanic and Atmospheric Administration National Marine Fisheries Service Southeast Fisheries Science Center 75 Virginia Beach Drive Miami, Florida 33149 August 2002 NOAA Technical Memorandum NMFS-SEFSC-487 Baseline Multispecies Coral Reef Fish Stock Assessment for the Dry Tortugas Jerald S. Ault 1, Steven G. Smith 1, Geoffrey A. Meester 1, Jiangang Luo 1, James A. Bohnsack 2 , and Steven L. Miller3 with significant contributions by Douglas E. Harper2, Dione W. Swanson3, Mark Chiappone3, Erik C. Franklin1, David B. McClellan2, Peter Fischel2, and Thomas W. Schmidt4 _____________________________ U.S. DEPARTMENT OF COMMERCE Donald L. Evans, Secretary National Oceanic and Atmospheric Administration Conrad C. Lautenbacher, Jr., Under Secretary for Oceans and Atmosphere National Marine Fisheries Service William T. Hogarth, Assistant Administrator for Fisheries August 2002 This technical memorandum series is used for documentation and timely communication of preliminary results, interim reports, or special purpose information. Although the memoranda are not subject to complete formal review, editorial control, or detailed editing, they are expected to reflect sound professional work. 1 University of Miami, Rosenstiel School of Marine and Atmospheric Sciences, Miami, FL 2 NOAA/Fisheries Southeast Fisheries Science Center, Miami, FL 3 National Undersea Research Center, Key Largo, FL 4 National Park Service, Homestead, FL NOTICE The National Marine Fisheries Service (NMFS) does not approve, recommend, or endorse any proprietary product or material mentioned in this publication.