Baseline Ecological Inventory for Three Bays National Park, Haiti OCTOBER 2016
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Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
Reef Sponges of the Genus Agelas (Porifera: Demospongiae) from the Greater Caribbean
Zootaxa 3794 (3): 301–343 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3794.3.1 http://zoobank.org/urn:lsid:zoobank.org:pub:51852298-F299-4392-9C89-A6FD14D3E1D0 Reef sponges of the genus Agelas (Porifera: Demospongiae) from the Greater Caribbean FERNANDO J. PARRA-VELANDIA1,2, SVEN ZEA2,4 & ROB W. M. VAN SOEST3 1St John's Island Marine Laboratory, Tropical Marine Science Institute (TMSI), National University of Singapore, 18 Kent Ridge Road, Singapore 119227. E-mail: [email protected] 2Universidad Nacional de Colombia, Sede Caribe, Centro de Estudios en Ciencias del Mar—CECIMAR; c/o INVEMAR, Calle 25 2- 55, Rodadero Sur, Playa Salguero, Santa Marta, Colombia. E-mail: [email protected] 3Netherlands Centre for Biodiversity Naturalis, P.O.Box 9517 2300 RA Leiden, The Netherlands. E-mail: [email protected] 4Corresponding author Table of contents Abstract . 301 Introduction . 302 The genus Agelas in the Greater Caribbean . 302 Material and methods . 303 Classification . 304 Phylum Porifera Grant, 1835 . 304 Class Demospongiae Sollas, 1875 . 304 Order Agelasida Hartman, 1980 . 304 Family Agelasidae Verrill, 1907 . 304 Genus Agelas Duchassaing & Michelotti, 1864 . 304 Agelas dispar Duchassaing & Michelotti, 1864 . 306 Agelas cervicornis (Schmidt, 1870) . 311 Agelas wiedenmayeri Alcolado, 1984. 313 Agelas sceptrum (Lamarck, 1815) . 315 Agelas dilatata Duchassaing & Michelotti, 1864 . 316 Agelas conifera (Schmidt, 1870). 318 Agelas tubulata Lehnert & van Soest, 1996 . 321 Agelas repens Lehnert & van Soest, 1998. 324 Agelas cerebrum Assmann, van Soest & Köck, 2001. 325 Agelas schmidti Wilson, 1902 . -
Cuba Birding Tour – March 2017
CUBA BIRDING TOUR – MARCH 2017 By Chris Lotz Cuban Tody, photographed on this tour by Jean Kirkwood www.birdingecotours.com [email protected] 2 | T R I P R E P O R T Cuba Birding Tour: March 2017 This was another fantastic Cuban birding tour with a wonderful group of participants. We found all the Cuban and regional endemics we were targeting, except for Gundlach’s Hawk, and we also saw a truly excellent number of North American migrants, such as a plethora of colorful wood warblers. The smallest bird in the world, Bee Hummingbird, numerous Cuban Trogon and Cuban Tody sightings, and brilliant views of Blue-headed Quail-Dove, Grey-fronted Quail-Dove and Key West Quail-Dove were some of the many avian highlights. A map showing the route we take on our annual set departure Cuba trip – we do Jamaica as an extension and in future years we’ll be adding other Caribbean destinations such as the Dominican Republic Day 1, 1 March 2017. Arrival in Havana All nine of us arrived early before the tour was to officially begin tomorrow. From our comfortable base near Havana airport we already started getting nicely acquainted with some of the single-island and regional endemics. There was a Cuban Emerald nest right outside the back door of the place we stayed (http://www.donaamaliacuba.com/en/place) and Red- legged Thrush was very much in evidence (as it always is throughout Cuba, even in the middle of cities). Antillean Palm Swift winged its way overhead, and Cuban Pewee showed very well and gave its characteristic call. -
Dominican Republic Endemics of Hispaniola II 1St February to 9Th February 2021 (9 Days)
Dominican Republic Endemics of Hispaniola II 1st February to 9th February 2021 (9 days) Palmchat by Adam Riley Although the Dominican Republic is perhaps best known for its luxurious beaches, outstanding food and vibrant culture, this island has much to offer both the avid birder and general naturalist alike. Because of the amazing biodiversity sustained on the island, Hispaniola ranks highest in the world as a priority for bird protection! This 8-day birding tour provides the perfect opportunity to encounter nearly all of the island’s 32 endemic bird species, plus other Greater Antillean specialities. We accomplish this by thoroughly exploring the island’s variety of habitats, from the evergreen and Pine forests of the Sierra de Bahoruco to the dry forests of the coast. Furthermore, our accommodation ranges from remote cabins deep in the forest to well-appointed hotels on the beach, each with its own unique local flair. Join us for this delightful tour to the most diverse island in the Caribbean! RBL Dominican Republic Itinerary 2 THE TOUR AT A GLANCE… THE ITINERARY Day 1 Arrival in Santo Domingo Day 2 Santo Domingo Botanical Gardens to Sabana del Mar (Paraiso Caño Hondo) Day 3 Paraiso Caño Hondo to Santo Domingo Day 4 Salinas de Bani to Pedernales Day 5 Cabo Rojo & Southern Sierra de Bahoruco Day 6 Cachote to Villa Barrancoli Day 7 Northern Sierra de Bahoruco Day 8 La Placa, Laguna Rincon to Santo Domingo Day 9 International Departures TOUR ROUTE MAP… RBL Dominican Republic Itinerary 3 THE TOUR IN DETAIL… Day 1: Arrival in Santo Domingo. -
Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
Early Stages of Fishes in the Western North Atlantic Ocean Volume
ISBN 0-9689167-4-x Early Stages of Fishes in the Western North Atlantic Ocean (Davis Strait, Southern Greenland and Flemish Cap to Cape Hatteras) Volume One Acipenseriformes through Syngnathiformes Michael P. Fahay ii Early Stages of Fishes in the Western North Atlantic Ocean iii Dedication This monograph is dedicated to those highly skilled larval fish illustrators whose talents and efforts have greatly facilitated the study of fish ontogeny. The works of many of those fine illustrators grace these pages. iv Early Stages of Fishes in the Western North Atlantic Ocean v Preface The contents of this monograph are a revision and update of an earlier atlas describing the eggs and larvae of western Atlantic marine fishes occurring between the Scotian Shelf and Cape Hatteras, North Carolina (Fahay, 1983). The three-fold increase in the total num- ber of species covered in the current compilation is the result of both a larger study area and a recent increase in published ontogenetic studies of fishes by many authors and students of the morphology of early stages of marine fishes. It is a tribute to the efforts of those authors that the ontogeny of greater than 70% of species known from the western North Atlantic Ocean is now well described. Michael Fahay 241 Sabino Road West Bath, Maine 04530 U.S.A. vi Acknowledgements I greatly appreciate the help provided by a number of very knowledgeable friends and colleagues dur- ing the preparation of this monograph. Jon Hare undertook a painstakingly critical review of the entire monograph, corrected omissions, inconsistencies, and errors of fact, and made suggestions which markedly improved its organization and presentation. -
The Journal of Caribbean Ornithology
THE J OURNAL OF CARIBBEAN ORNITHOLOGY SOCIETY FOR THE C ONSERVATION AND S TUDY OF C ARIBBEAN B IRDS S OCIEDAD PARA LA C ONSERVACIÓN Y E STUDIO DE LAS A VES C ARIBEÑAS ASSOCIATION POUR LA C ONSERVATION ET L’ E TUDE DES O ISEAUX DE LA C ARAÏBE 2005 Vol. 18, No. 1 (ISSN 1527-7151) Formerly EL P ITIRRE CONTENTS RECUPERACIÓN DE A VES M IGRATORIAS N EÁRTICAS DEL O RDEN A NSERIFORMES EN C UBA . Pedro Blanco y Bárbara Sánchez ………………....................................................................................................................................................... 1 INVENTARIO DE LA A VIFAUNA DE T OPES DE C OLLANTES , S ANCTI S PÍRITUS , C UBA . Bárbara Sánchez ……..................... 7 NUEVO R EGISTRO Y C OMENTARIOS A DICIONALES S OBRE LA A VOCETA ( RECURVIROSTRA AMERICANA ) EN C UBA . Omar Labrada, Pedro Blanco, Elizabet S. Delgado, y Jarreton P. Rivero............................................................................... 13 AVES DE C AYO C ARENAS , C IÉNAGA DE B IRAMA , C UBA . Omar Labrada y Gabriel Cisneros ……………........................ 16 FORAGING B EHAVIOR OF T WO T YRANT F LYCATCHERS IN T RINIDAD : THE G REAT K ISKADEE ( PITANGUS SULPHURATUS ) AND T ROPICAL K INGBIRD ( TYRANNUS MELANCHOLICUS ). Nadira Mathura, Shawn O´Garro, Diane Thompson, Floyd E. Hayes, and Urmila S. Nandy........................................................................................................................................ 18 APPARENT N ESTING OF S OUTHERN L APWING ON A RUBA . Steven G. Mlodinow................................................................ -
Hymenoptera: Eulophidae) 321-356 ©Entomofauna Ansfelden/Austria; Download Unter
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Entomofauna Jahr/Year: 2007 Band/Volume: 0028 Autor(en)/Author(s): Yefremova Zoya A., Ebrahimi Ebrahim, Yegorenkova Ekaterina Artikel/Article: The Subfamilies Eulophinae, Entedoninae and Tetrastichinae in Iran, with description of new species (Hymenoptera: Eulophidae) 321-356 ©Entomofauna Ansfelden/Austria; download unter www.biologiezentrum.at Entomofauna ZEITSCHRIFT FÜR ENTOMOLOGIE Band 28, Heft 25: 321-356 ISSN 0250-4413 Ansfelden, 30. November 2007 The Subfamilies Eulophinae, Entedoninae and Tetrastichinae in Iran, with description of new species (Hymenoptera: Eulophidae) Zoya YEFREMOVA, Ebrahim EBRAHIMI & Ekaterina YEGORENKOVA Abstract This paper reflects the current degree of research of Eulophidae and their hosts in Iran. A list of the species from Iran belonging to the subfamilies Eulophinae, Entedoninae and Tetrastichinae is presented. In the present work 47 species from 22 genera are recorded from Iran. Two species (Cirrospilus scapus sp. nov. and Aprostocetus persicus sp. nov.) are described as new. A list of 45 host-parasitoid associations in Iran and keys to Iranian species of three genera (Cirrospilus, Diglyphus and Aprostocetus) are included. Zusammenfassung Dieser Artikel zeigt den derzeitigen Untersuchungsstand an eulophiden Wespen und ihrer Wirte im Iran. Eine Liste der für den Iran festgestellten Arten der Unterfamilien Eu- lophinae, Entedoninae und Tetrastichinae wird präsentiert. Mit vorliegender Arbeit werden 47 Arten in 22 Gattungen aus dem Iran nachgewiesen. Zwei neue Arten (Cirrospilus sca- pus sp. nov. und Aprostocetus persicus sp. nov.) werden beschrieben. Eine Liste von 45 Wirts- und Parasitoid-Beziehungen im Iran und ein Schlüssel für 3 Gattungen (Cirro- spilus, Diglyphus und Aprostocetus) sind in der Arbeit enthalten. -
A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution
marine drugs Review A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution Adrian Galitz 1 , Yoichi Nakao 2 , Peter J. Schupp 3,4 , Gert Wörheide 1,5,6 and Dirk Erpenbeck 1,5,* 1 Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; [email protected] (A.G.); [email protected] (G.W.) 2 Graduate School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo 169-8555, Japan; [email protected] 3 Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, 26111 Wilhelmshaven, Germany; [email protected] 4 Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg (HIFMB), 26129 Oldenburg, Germany 5 GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany 6 SNSB-Bavarian State Collection of Palaeontology and Geology, 80333 Munich, Germany * Correspondence: [email protected] Abstract: Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding Citation: Galitz, A.; Nakao, Y.; of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal Schupp, P.J.; Wörheide, G.; pathways and evolution of compound production in sponges. This benefits the discovery rate and Erpenbeck, D. A Soft Spot for yield of bioprospecting for novel marine natural products by identifying lineages with high potential Chemistry–Current Taxonomic and Evolutionary Implications of Sponge of being new sources of valuable sponge compounds. -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Evolution of the Iguanine Lizards (Sauria, Iguanidae) As Determined by Osteological and Myological Characters David F
Brigham Young University Science Bulletin, Biological Series Volume 12 | Number 3 Article 1 1-1971 Evolution of the iguanine lizards (Sauria, Iguanidae) as determined by osteological and myological characters David F. Avery Department of Biology, Southern Connecticut State College, New Haven, Connecticut Wilmer W. Tanner Department of Zoology, Brigham Young University, Provo, Utah Follow this and additional works at: https://scholarsarchive.byu.edu/byuscib Part of the Anatomy Commons, Botany Commons, Physiology Commons, and the Zoology Commons Recommended Citation Avery, David F. and Tanner, Wilmer W. (1971) "Evolution of the iguanine lizards (Sauria, Iguanidae) as determined by osteological and myological characters," Brigham Young University Science Bulletin, Biological Series: Vol. 12 : No. 3 , Article 1. Available at: https://scholarsarchive.byu.edu/byuscib/vol12/iss3/1 This Article is brought to you for free and open access by the Western North American Naturalist Publications at BYU ScholarsArchive. It has been accepted for inclusion in Brigham Young University Science Bulletin, Biological Series by an authorized editor of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. S-^' Brigham Young University f?!AR12j97d Science Bulletin \ EVOLUTION OF THE IGUANINE LIZARDS (SAURIA, IGUANIDAE) AS DETERMINED BY OSTEOLOGICAL AND MYOLOGICAL CHARACTERS by David F. Avery and Wilmer W. Tanner BIOLOGICAL SERIES — VOLUME Xil, NUMBER 3 JANUARY 1971 Brigham Young University Science Bulletin