The Who, What and Where of Longidoridae and Trichodoridae
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Gastrointestinal Helminthic Parasites of Habituated Wild Chimpanzees
Aus dem Institut für Parasitologie und Tropenveterinärmedizin des Fachbereichs Veterinärmedizin der Freien Universität Berlin Gastrointestinal helminthic parasites of habituated wild chimpanzees (Pan troglodytes verus) in the Taï NP, Côte d’Ivoire − including characterization of cultured helminth developmental stages using genetic markers Inaugural-Dissertation zur Erlangung des Grades eines Doktors der Veterinärmedizin an der Freien Universität Berlin vorgelegt von Sonja Metzger Tierärztin aus München Berlin 2014 Journal-Nr.: 3727 Gedruckt mit Genehmigung des Fachbereichs Veterinärmedizin der Freien Universität Berlin Dekan: Univ.-Prof. Dr. Jürgen Zentek Erster Gutachter: Univ.-Prof. Dr. Georg von Samson-Himmelstjerna Zweiter Gutachter: Univ.-Prof. Dr. Heribert Hofer Dritter Gutachter: Univ.-Prof. Dr. Achim Gruber Deskriptoren (nach CAB-Thesaurus): chimpanzees, helminths, host parasite relationships, fecal examination, characterization, developmental stages, ribosomal RNA, mitochondrial DNA Tag der Promotion: 10.06.2015 Contents I INTRODUCTION ---------------------------------------------------- 1- 4 I.1 Background 1- 3 I.2 Study objectives 4 II LITERATURE OVERVIEW --------------------------------------- 5- 37 II.1 Taï National Park 5- 7 II.1.1 Location and climate 5- 6 II.1.2 Vegetation and fauna 6 II.1.3 Human pressure and impact on the park 7 II.2 Chimpanzees 7- 12 II.2.1 Status 7 II.2.2 Group sizes and composition 7- 9 II.2.3 Territories and ranging behavior 9 II.2.4 Diet and hunting behavior 9- 10 II.2.5 Contact with humans 10 II.2.6 -
Morphology and Taxonomy of Xiphinema ( Nematoda: Longidoridae) Occurring in Arkansas,USA
江西农业大学学报 2010,32( 5): 0928 - 0945 http: / /xuebao. jxau. edu. cn Acta AGriculturae Universitatis JianGxiensis E - mail: ndxb7775@ sina. com Morphology and Taxonomy of Xiphinema ( Nematoda: Longidoridae) Occurring in Arkansas,USA YE Weimin 1,2 ,ROBBINS R. T. 1 ( 1. Department of Plant PatholoGy,NematoloGy Laboratory,2601 N. YounG Ave. ,University of Arkan- sas,Fayetteville,AR 72704,USA. 2. Present address: Nematode Assay Laboratory,North Carolina Depart- ment of AGriculture and Consumer Services,RaleiGh,NC 27607,USA) Abstract: In a survey,primarily from the rhizosphere of hardwood trees GrowinG on sandy stream banks, for lonGidorids,828 soil samples were collected from 37 Arkansas counties in 1999—2001. One hundred twenty-seven populations of Xiphinema were recovered from 452 of the 828 soil samples ( 54. 6% ),includinG 71 populations of X. americanum sensu lato,33 populations of X. bakeri,23 populations of X. chambersi and one population of X. krugi. The morpholoGical and morphometric characteristics of these Arkansas species are presented. MorpholoGical and morphometric characteristics are also Given for two populations of X. krugi from Hawaii and North Carolina. Key words: Arkansas; morpholoGy; SEM; survey; taxonomy; Xiphinema americanum; X. bakeri; X. chambersi; X. krugi. 中图分类号: Q959. 17; S432. 4 + 5 文献标志码: A 文章编号: 1000 - 2286( 2010) 05 - 0928 - 18 Xiphinema species are miGratory ectoparasites of both herbaceous and woody plants. Direct feedinG dam- aGe may result in root-tip GallinG and stuntinG of top Growth. In addition,some species -
Worms, Nematoda
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Faculty Publications from the Harold W. Manter Laboratory of Parasitology Parasitology, Harold W. Manter Laboratory of 2001 Worms, Nematoda Scott Lyell Gardner University of Nebraska - Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/parasitologyfacpubs Part of the Parasitology Commons Gardner, Scott Lyell, "Worms, Nematoda" (2001). Faculty Publications from the Harold W. Manter Laboratory of Parasitology. 78. https://digitalcommons.unl.edu/parasitologyfacpubs/78 This Article is brought to you for free and open access by the Parasitology, Harold W. Manter Laboratory of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Faculty Publications from the Harold W. Manter Laboratory of Parasitology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Published in Encyclopedia of Biodiversity, Volume 5 (2001): 843-862. Copyright 2001, Academic Press. Used by permission. Worms, Nematoda Scott L. Gardner University of Nebraska, Lincoln I. What Is a Nematode? Diversity in Morphology pods (see epidermis), and various other inverte- II. The Ubiquitous Nature of Nematodes brates. III. Diversity of Habitats and Distribution stichosome A longitudinal series of cells (sticho- IV. How Do Nematodes Affect the Biosphere? cytes) that form the anterior esophageal glands Tri- V. How Many Species of Nemata? churis. VI. Molecular Diversity in the Nemata VII. Relationships to Other Animal Groups stoma The buccal cavity, just posterior to the oval VIII. Future Knowledge of Nematodes opening or mouth; usually includes the anterior end of the esophagus (pharynx). GLOSSARY pseudocoelom A body cavity not lined with a me- anhydrobiosis A state of dormancy in various in- sodermal epithelium. -
(Nematoda: Longidoridae) with Description of a New Species
Eur J Plant Pathol (2020) 158:59–81 https://doi.org/10.1007/s10658-020-02055-0 An integrative taxonomic study of the needle nematode complex Longidorus goodeyi Hooper, 1961 (Nematoda: Longidoridae) with description of a new species. Ruihang Cai & Tom Prior & Bex Lawson & Carolina Cantalapiedra-Navarrete & Juan E. Palomares-Rius & Pablo Castillo & Antonio Archidona-Yuste Received: 14 April 2020 /Revised: 8 June 2020 /Accepted: 19 June 2020 /Published online: 26 June 2020 # The Author(s) 2020 Abstract Needle nematodes are polyphagous root- and slightly offset by a depression with body contour, ectoparasites parasitizing a wide range of economically amphidial pouch with slightly asymmetrical lobes, important plants not only by directly feeding on root odontostyle 80.5–101.0 µm long, tail short and conoid cells, but also by transmitting nepoviruses. This study rounded. Longidorus panderaltum n. sp. is quite similar deciphers the diversity of the complex Longidorus to L. goodeyi and L. onubensis in major morphometrics goodeyi through integrative diagnosis method, based and morphology. However, differential morphology in on a combination of morphological, morphometrical, the tail shape of first-stage juvenile, phylogeny and multivariate analysis and molecular data. A new haplonet analyses indicate they are three distinct valid Longidorus species, Longidorus panderaltum n. sp. is species. This study defines those three species as mem- described and illustrated from a population associated bers of L. goodeyi complex group and reveals the taxo- with the rhizosphere of asphodel (Asphodelus ramosus nomical complexity of the genus Longidorus.This L.) in southern Spain. Morphologically, L. panderaltum L. goodeyi complex group demonstrated that the biodi- n. -
Morphological and Molecular Characterization of Longidorus Americanum N
Journal of Nematology 37(1):94–104. 2005. ©The Society of Nematologists 2005. Morphological and Molecular Characterization of Longidorus americanum n. sp. (Nematoda: Longidoridae), aNeedle Nematode Parasitizing Pine in Georgia Z. A. H andoo, 1 L. K. C arta, 1 A. M. S kantar, 1 W. Y e , 2 R. T. R obbins, 2 S. A. S ubbotin, 3 S. W. F raedrich, 4 and M. M. C ram4 Abstract: We describe and illustrate anew needle nematode, Longidorus americanum n. sp., associated with patches of severely stunted and chlorotic loblolly pine, ( Pinus taeda L.) seedlings in seedbeds at the Flint River Nursery (Byromville, GA). It is characterized by having females with abody length of 5.4–9.0 mm; lip region slightly swollen, anteriorly flattened, giving the anterior end atruncate appearance; long odontostyle (124–165 µm); vulva at 44%–52% of body length; and tail conoid, bluntly rounded to almost hemispherical. Males are rare but present, and in general shorter than females. The new species is morphologically similar to L. biformis, L. paravineacola, L. saginus, and L. tarjani but differs from these species either by the body, odontostyle and total stylet length, or by head and tail shape. Sequence data from the D2–D3 region of the 28S rDNA distinguishes this new species from other Longidorus species. Phylogenetic relationships of Longidorus americanum n. sp. with other longidorids based on analysis of this DNA fragment are presented. Additional information regarding the distribution of this species within the region is required. Key words: DNA sequencing, Georgia, loblolly pine, Longidorus americanum n. sp., molecular data, morphology, new species, needle nematode, phylogenetics, SEM, taxonomy. -
Plant-Parasitic Nematodes and Their Management: a Review
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by International Institute for Science, Technology and Education (IISTE): E-Journals Journal of Biology, Agriculture and Healthcare www.iiste.org ISSN 2224-3208 (Paper) ISSN 2225-093X (Online) Vol.8, No.1, 2018 Plant-Parasitic Nematodes and Their Management: A Review Misgana Mitiku Department of Plant Pathology, Southern Agricultural Research Institute, Jinka, Agricultural Research Center, Jinka, Ethiopia Abstract Nowhere will the need to sustainably increase agricultural productivity in line with increasing demand be more pertinent than in resource poor areas of the world, especially Africa, where populations are most rapidly expanding. Although a 35% population increase is projected by 2050. Significant improvements are consequently necessary in terms of resource use efficiency. In moving crop yields towards an efficiency frontier, optimal pest and disease management will be essential, especially as the proportional production of some commodities steadily shifts. With this in mind, it is essential that the full spectrums of crop production limitations are considered appropriately, including the often overlooked nematode constraints about half of all nematode species are marine nematodes, 25% are free-living, soil inhabiting nematodes, I5% are animal and human parasites and l0% are plant parasites. Today, even with modern technology, 5-l0% of crop production is lost due to nematodes in developed countries. So, the aim of this work was to review some agricultural nematodes genera, species they contain and their management methods. In this review work the species, feeding habit, morphology, host and symptoms they show on the effected plant and management of eleven nematode genera was reviewed. -
Summary Paratrichodorus Minor Is a Highly Polyphagous Plant Pest, Generally Found in Tropical Or Subtropical Soils
CSL Pest Risk Analysis for Paratrichodorus minor copyright CSL, 2008 CSL PEST RISK ANALYSIS FOR Paratrichodorus minor Abstract/ Summary Paratrichodorus minor is a highly polyphagous plant pest, generally found in tropical or subtropical soils. It has entered the UK in growing media associated with palm trees and is most likely to establish on ornamental plants grown under protection. There is a moderate likelihood of the pest establishing outdoors in the UK through the planting of imported plants in gardens or amenity areas. However there is a low likelihood of the nematode spreading from such areas to commercial food crops, to which it presents a small risk of economic impact. P. minor is known to vector the Tobacco rattle virus (TRV), which affects potatoes, possibly strains that are not already present in the UK, but the risk of the nematode entering in association with seed potatoes is low. Overall the risk of P. minor to the UK is rated as low. STAGE 1: PRA INITIATION 1. What is the name of the pest? Paratrichodorus minor (Colbran, 1956) Siddiqi, 1974 Nematode: Trichodoridae Synonyms: Paratrichodorus christiei (Allen, 1957) Siddiqi, 1974 Paratrichodorus (Nanidorus) christiei (Allen, 1957) Siddiqi, 1974 Paratrichodorus (Nanidorus) minor (Colbran, 1956) Siddiqi, 1974 Trichodorus minor Colbran, 1956 Trichodorus christiei Allen, 1957 Nanidorus minor (Colbran, 1956) Siddiqi, 1974 Nanidorus christiei (Allen, 1957) Siddiqi, 1974 Trichodorus obesus Razjivin & Penton, 1975 Paratrichodorus obesus (Razjivin & Penton, 1975) Rodriguez-M. & Bell, 1978. Paratrichodorus (Nanidorus) obesus (Razjivin & Penton, 1975) Rodriguez-M. & Bell, 1978. Common names: English: a stubby-root nematode. References: Decraemer, 1995 In Europe there has been some confusion between P. -
First Report of Stubby Root Nematode, Paratrichodorus Teres (Nematoda: Trichodoridae) from Iran
Australasian Plant Dis. Notes (2014) 9:131 DOI 10.1007/s13314-014-0131-4 First report of stubby root nematode, Paratrichodorus teres (Nematoda: Trichodoridae) from Iran R. Heydari & Z. Tanha Maafi & F. Omati & W. Decraemer Received: 8 October 2013 /Accepted: 20 March 2014 /Published online: 4 April 2014 # Australasian Plant Pathology Society Inc. 2014 Abstract During a survey of plant-parasitic nematodes in fruit Trichodorus, Nanidorus and Paratrichodorus are natural tree nurseries in Iran, a species of the genus Paratrichodorus vectors of the plant Tobraviruses occurring worldwide from the family Trichodoridae was found in the rhizosphere of (Taylor and Brown 1997; Decraemer and Geraert 2006). apricot seedlings in Shahrood, central Iran, then subsequently in Eight species of the Trichodoridae family have so far been Karaj orchards. Morphological and morphometric characters of reported from Iran: Trichodorus orientalis (De Waele and the specimens were in agreement with P. teres.TheD2/D3 Hashim 1983), T. persicus (De Waele and Sturhan 1987), expansion fragment of the large subunit (LSU) of rRNA gene T. gilanensis, T. primitivus, Paratrichodorus porosus, P. of the nematode was also sequenced. P. teres is considered an tunisiensis (Maafi and Decraemer 2002), T. arasbaranensis economically important species in agricultural crop, worldwide. (Zahedi et al. 2009)andP. mi no r (now Nanidorus minor) This is the first report of the occurrence of P. teres in Iran. (Pourjam et al. 2011). Several species were detected in a survey conducted on Keywords Apricot . Fruit tree nursery . Iran . plant-parasitic nematodes in fruit tree nurseries. Among Paratrichodorus teres them, a nematode population belonging to Trichodoridae was observed in the rhizosphere of apricot seedlings in Shahroood, Semnan province, central Iran, that was sub- Trichodorid nematodes are root ectoparasites, usually sequently identified as P. -
Morphological and Molecular Characterisation of Paralongidorus Rex Andrássy, 1986 (Nematoda: Longidoridae) from Poland and Ukraine
Eur J Plant Pathol (2015) 141:385–395 DOI 10.1007/s10658-014-0550-2 Morphological and molecular characterisation of Paralongidorus rex Andrássy, 1986 (Nematoda: Longidoridae) from Poland and Ukraine Franciszek Wojciech Kornobis & Solomija Susulovska & Andrij Susulovsky & Sergei A. Subbotin Accepted: 7 October 2014 /Published online: 17 October 2014 # The Author(s) 2014. This article is published with open access at Springerlink.com Abstract Paralongidorus rex was found for the first profiles with five enzymes are given. Additionally, in- time in Poland and Ukraine. This paper describes fe- formation on new host plants and map of distribution for males and juveniles from four populations of this spe- P. re x are provided. The new record of this nematode cies on the basis of morphology and morphometrics and species, previously identified as Paralongidorus sp. provides molecular characterization using 18S, ITS1 (GenBank: AY601582) from Slovakia, is defined based and D2-D3 expansion segments of 28S rRNA gene on comparison of sequences of the D2-D3 expansion sequences. Morphometrically, females from these segments of 28S rRNA gene. Finally, remarks on the populations differed slighty in V ratio (means in four potential importance of this species in grapevine pro- populations: 41.9; 42.7; 46.1; 46.8) and odontostylet duction are given. length (166.6; 170.6; 191.5; 193.2). Phylogenetic anal- ysis showed that P. re x had a sister relationship with Keywords Paralongidorus rex . Morphometrics . P. iranicus. PCR-D2-D3 of 28S-RFLP diagnostic D2-D3 of 28S rRNA gene . ITS1 rRNA gene . 18S rRNA gene . RFLP F. W. Kornobis (*) Department of Zoology, Institute of Plant Protection- National Research Institute, Władysława Węgorka 20, 60-318 Poznań, Nematodes of the family Longidoridae are obligatory Poland plant parasites and are considered as economically e-mail: [email protected] important pests. -
Description and Molecular Characterisation of Paralongidorus Litoralis Sp.N.Andp
Nematology, 2008, Vol. 10(1), 87-101 Description and molecular characterisation of Paralongidorus litoralis sp.n.andP. paramaximus Heyns, 1965 (Nematoda: Longidoridae) from Spain Juan E. PALOMARES-RIUS 1,SergeiA.SUBBOTIN 2,3,BlancaB.LANDA 1, ∗ Nicola VOVLAS 4 and Pablo CASTILLO 1, 1 Institute of Sustainable Agriculture, Spanish National Research Council (CSIC), Alameda del Obispo s/n, Apdo. 4084, 14080 Córdoba, Spain 2 Plant Pest Diagnostics Center, California Department of Food and Agriculture, 3294 Meadowview Road, Sacramento, CA 95832-1448, USA 3 Center of Parasitology of A.N. Severtsov Institute of Ecology and Evolution of the Russian Academy of Sciences, Leninskii Prospect 33, Moscow, 117071, Russia 4 Istituto per la Protezione delle Piante, Sezione di Bari, Consiglio Nazionale delle Ricerche, (CNR), Via G. Amendola 165/A, 70126 Bari, Italy Received: 17 July 2007; revised: 23 August 2007 Accepted for publication: 23 August 2007 Summary – Paralongidorus litoralis sp. n., a new bisexual species of the genus, is described and illustrated by light microscopy, scanning electron microscopy and molecular studies from specimens collected in a coastal sand dune soil around roots of lentisc (Pistacia lentiscus L.) from Zahara de los Atunes (Cadiz), southern Spain. Paralongidorus litoralis sp. n. is characterised by the large body size (7.5-10.0 mm), a rounded lip region, clearly offset from the body by a collar-like constriction, and bearing a very large stirrup-shaped, amphidial fovea, with conspicuous slit-like aperture, a very long and flexible odontostyle ca 190 µm long, guiding ring located at 35 µm from anterior end, and males with spicules ca 70 µm long. -
The Types of Supplements in the Family Tobrilidae (Nematoda, Enoplia) Alexander V
Russian Journal of Nematology, 2015, 23 (2), 81 – 90 The types of supplements in the family Tobrilidae (Nematoda, Enoplia) Alexander V. Shoshin1, Ekaterina A. Shoshina1 and Julia K. Zograf2, 3 1Zoological Institute, Russian Academy of Sciences, Universitetskaya Naberezhnaya 1, 199034, Saint Petersburg, Russia 2A.V. Zhirmunsky Institute of Marine Biology, Far Eastern Branch of the Russian Academy of Sciences, Paltchevsky Street 17, 690041, Vladivostok, Russia 3Far Eastern Federal University, Sukhanova Street 8, 690090, Vladivostok, Russia e-mail: [email protected] Accepted for publication 11 October 2015 Summary. The structure of supplementary organs and buccal cavity are the main diagnostic features for identification of Tobrilidae species. Four main supplement types can be distinguished among representatives of this family. Type I supplements are typical for Tobrilus, Lamuania and Semitobrilus and are characterised by their small size and slightly protruding external part. There are two variations of the type I supplement structure: amabilis and gracilis. Type II is typical for several Eutobrilus species (E. peregrinator, E. prodigiosus, E. strenuus, E. nothus). These supplements are very similar to the type I supplements but are characterised in having a highly protruding torus with numerous microthorns and a bulbulus situated at the base of the ampoule. Type III is typical for Eutobrilus species from the Tobrilini tribe, i.e., E. graciliformes, E. papilicaudatus and E. differtus, and Mesotobrilus spp. from the Paratrilobini tribe and is characterised by a well-defined cap and a bulbulus situated at the base of the ampoule. Type IV is observed in the majority of Eutobrilus, Paratrilobus, Brevitobrilus and Neotobrilus and is the most complex supplement type with a mobile cap and an apical bulbulus. -
2020.01.27.921304.Full.Pdf
bioRxiv preprint doi: https://doi.org/10.1101/2020.01.27.921304; this version posted January 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 A novel metabarcoding strategy for studying nematode 2 communities 3 4 Md. Maniruzzaman Sikder1, 2, Mette Vestergård1, Rumakanta Sapkota3, Tina Kyndt4, 5 Mogens Nicolaisen1* 6 7 1Department of Agroecology, Aarhus University, Slagelse, Denmark 8 2Department of Botany, Jahangirnagar University, Savar, Dhaka, Bangladesh 9 3Department of Environmental Science, Aarhus University, Roskilde, Denmark 10 4Department of Biotechnology, Ghent University, Ghent, Belgium 11 12 13 *Corresponding author 14 Email: [email protected] 15 16 Abstract 17 Nematodes are widely abundant soil metazoa and often referred to as indicators of soil health. 18 While recent advances in next-generation sequencing technologies have accelerated 19 research in microbial ecology, the ecology of nematodes remains poorly elucidated, partly due 20 to the lack of reliable and validated sequencing strategies. Objectives of the present study 21 were (i) to compare commonly used primer sets and to identify the most suitable primer set 22 for metabarcoding of nematodes; (ii) to establish and validate a high-throughput sequencing 23 strategy for nematodes using Illumina paired-end sequencing. In this study, we tested four 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.01.27.921304; this version posted January 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.