Pomatomus Saltatrix, in Eastern Australia
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Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
Marine Biodiversity of the Northern and Yorke Peninsula NRM Region
Marine Environment and Ecology Benthic Ecology Subprogram Marine Biodiversity of the Northern and Yorke Peninsula NRM Region SARDI Publication No. F2009/000531-1 SARDI Research Report series No. 415 Keith Rowling, Shirley Sorokin, Leonardo Mantilla and David Currie SARDI Aquatic Sciences PO Box 120 Henley Beach SA 5022 December 2009 Prepared for the Department for Environment and Heritage 1 Marine Biodiversity of the Northern and Yorke Peninsula NRM Region Keith Rowling, Shirley Sorokin, Leonardo Mantilla and David Currie December 2009 SARDI Publication No. F2009/000531-1 SARDI Research Report Series No. 415 Prepared for the Department for Environment and Heritage 2 This Publication may be cited as: Rowling, K.P., Sorokin, S.J., Mantilla, L. & Currie, D.R. (2009) Marine Biodiversity of the Northern and Yorke Peninsula NRM Region. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000531-1. South Australian Research and Development Institute SARDI Aquatic Sciences 2 Hamra Avenue West Beach SA 5024 Telephone: (08) 8207 5400 Facsimile: (08) 8207 5406 http://www.sardi.sa.gov.au DISCLAIMER The authors warrant that they have taken all reasonable care in producing this report. The report has been through the SARDI internal review process, and has been formally approved for release by the Chief of Division. Although all reasonable efforts have been made to ensure quality, SARDI does not warrant that the information in this report is free from errors or omissions. SARDI does not accept any liability for the contents of this report or for any consequences arising from its use or any reliance placed upon it. -
Systematics, Phylogeny, and Taphonomy of Ghost Shrimps (Decapoda): a Perspective from the Fossil Record
73 (3): 401 – 437 23.12.2015 © Senckenberg Gesellschaft für Naturforschung, 2015. Systematics, phylogeny, and taphonomy of ghost shrimps (Decapoda): a perspective from the fossil record Matúš Hyžný *, 1, 2 & Adiël A. Klompmaker 3 1 Geological-Paleontological Department, Natural History Museum Vienna, Burgring 7, 1010 Vienna, Austria; Matúš Hyžný [hyzny.matus@ gmail.com] — 2 Department of Geology and Paleontology, Faculty of Natural Sciences, Comenius University, Mlynská dolina, Ilkovičova 6, SVK-842 15 Bratislava, Slovakia — 3 Florida Museum of Natural History, University of Florida, 1659 Museum Road, PO Box 117800, Gaines- ville, FL 32611, USA; Adiël A. Klompmaker [[email protected]] — * Correspond ing author Accepted 06.viii.2015. Published online at www.senckenberg.de/arthropod-systematics on 14.xii.2015. Editor in charge: Stefan Richter. Abstract Ghost shrimps of Callianassidae and Ctenochelidae are soft-bodied, usually heterochelous decapods representing major bioturbators of muddy and sandy (sub)marine substrates. Ghost shrimps have a robust fossil record spanning from the Early Cretaceous (~ 133 Ma) to the Holocene and their remains are present in most assemblages of Cenozoic decapod crustaceans. Their taxonomic interpretation is in flux, mainly because the generic assignment is hindered by their insufficient preservation and disagreement in the biological classification. Fur- thermore, numerous taxa are incorrectly classified within the catch-all taxonCallianassa . To show the historical patterns in describing fos- sil ghost shrimps and to evaluate taphonomic aspects influencing the attribution of ghost shrimp remains to higher level taxa, a database of all fossil species treated at some time as belonging to the group has been compiled: 250 / 274 species are considered valid ghost shrimp taxa herein. -
Management of the Proposed Geographe Bay Blue Swimmer and Sand Crab Managed Fishery
Research Library Fisheries management papers Fisheries Research 8-2003 Management of the proposed Geographe Bay blue swimmer and sand crab managed fishery. Jane Borg Follow this and additional works at: https://researchlibrary.agric.wa.gov.au/fr_fmp Part of the Aquaculture and Fisheries Commons, Business Administration, Management, and Operations Commons, and the Natural Resources and Conservation Commons Recommended Citation Borg, J. (2003), Management of the proposed Geographe Bay blue swimmer and sand crab managed fishery.. Department of Fisheries Western Australia, Perth. Report No. 170. This report is brought to you for free and open access by the Fisheries Research at Research Library. It has been accepted for inclusion in Fisheries management papers by an authorized administrator of Research Library. For more information, please contact [email protected]. MANAGEMENT OF THE PROPOSED GEOGRAPHE BAY BLUE SWIMMER AND SAND CRAB MANAGED FISHERY A management discussion paper By Jane Borg and Cathy Campbell FISHERIES MANAGEMENT PAPER NO. 170 Department of Fisheries 168 St. George's Terrace Perth WA 6000 August 2003 ISSN 0819-4327 Fisheries Management Paper No. 170 Management of the Proposed Geographe Bay Blue Swimmer and Sand Crab Managed Fishery August 2003 Fisheries Management Paper No. 170 ISSN 0819-4327 2 Fisheries Management Paper No. 170 CONTENTS OPPORTUNITY TO COMMENT................................................................................ 5 EXECUTIVE SUMMARY .......................................................................................... -
Resource Assessments for Multi-Species Fisheries In
CM 2007/O:11 Resource assessments for multi-species fisheries in NSW, Australia: qualitative status determination using life history characteristics, empirical indicators and expert review. James Scandol and Kevin Rowling Wild Fisheries Program; Systems Research Branch Division of Science and Research; NSW Department of Primary Industries Cronulla Fisheries Centre; PO Box 21, Cronulla NSW 2230 Not to be cited without prior reference to the authors Abstract As the scope of fisheries management continues to broaden, there is increased pressure on scientific assessment processes to consider a greater number of species. This expanded list of species will inevitably include those with a range of life-history strategies, heterogeneous sources of information, and diverse stakeholder values. When faced with this challenge in New South Wales (Australia), the Department of Primary Industries developed systems and processes that scaled efficiently as the number of species requiring consideration increased. The key aspects of our approach are: • A qualitative determination of exploitation status based upon expert review. The current categories are: growth/recruitment overfished, fully fished, moderately fished, lightly fished, undefined and uncertain. • Application of management rules that require a Species Recovery Program should any species be determined to be overfished. • An emphasis on readily calculated empirical indicators (such as catch, catch-rates, length and age composition), rather than model-based estimates of biomass or fishing mortality. • Use of databases and electronic reporting systems to calculate empirical indicators based upon specified rules. Currently, there are 90 species considered with around six scientific and technical staff. These species were identified by commercial fishers as the important species from five multi-species and multi- method input-controlled fisheries. -
Synopsis of the Family Callianassidae, with Keys to Subfamilies, Genera and Species, and the Description of New Taxa (Crustacea: Decapoda: Thalassinidea)
ZV-326 (pp 03-152) 02-01-2007 14:37 Pagina 3 Synopsis of the family Callianassidae, with keys to subfamilies, genera and species, and the description of new taxa (Crustacea: Decapoda: Thalassinidea) K. Sakai Sakai, K. Synopsis of the family Callianassidae, with keys to subfamilies, genera and species, and the description of new taxa (Crustacea: Decapoda: Thalassinidea). Zool. Verh. Leiden 326, 30.vii.1999: 1-152, figs 1-33.— ISSN 0024-1652/ISBN 90-73239-72-9. K. Sakai, Shikoku University, 771-1192 Tokushima, Japan, e-mail: [email protected]. Key words: Crustacea; Decapoda; Thalassinidae; Callianassidae; synopsis. A synopsis of the family Callianassidae is presented. Defenitions are given of the subfamilies and genera. Keys to the sufamilies, genera, as well as seperate keys to the species occurring in certain bio- geographical areas are provided. At least the synonymy, type-locality, and distribution of the species are listed. The following new taxa are described: Calliapaguropinae subfamily nov., Podocallichirus genus nov., Callianassa whitei spec. nov., Callianassa gruneri spec. nov., Callianassa ngochoae spec. nov., Neocallichirus kempi spec. nov. and Calliax doerjesti spec. nov. Contents Introduction ............................................................................................................................. 3 Systematics .............................................................................................................................. 7 Subfamily Calliapaguropinae nov. ..................................................................................... -
The South Australian Marine Scalefish Fishery Status Report -Analysis Of
MMSSF Analysis of Fishery Statistics – 2013 The South AAustralianAuustralian stralian Marine Scalefish Fishery Status Report – Analysis ooff Fishery Statistics for 202011 2/13 AJ Fowler, R MMcGarvey, cGarvey, MA Steer and JE FFeeenstraenstra SARDI Publication No. F2007/000565-8 SARDI Research Report Series No. 747 SARDI Aquatic Sciences PPOO Box 120 Henley Beach SA 5022 December 2013 Report to PIRSA Fisheries and Aquaculture i MSF Analysis of Fishery Statistics – 2013 ii MSF Analysis of Fishery Statistics – 2013 The South Australian Marine Scalefish Fishery Status Report – Analysis of Fishery Statistics for 2012/13 Report to PIRSA Fisheries and Aquaculture AJ Fowler, R McGarvey, MA Steer and JE Feenstra SARDI Publication No. F2007/000565-8 SARDI Research Report Series No. 747 December 2013 iii MSF Analysis of Fishery Statistics – 2013 This publication may be cited as: Fowler, A.J., McGarvey, R., Steer, M.A. and Feenstra, J.E. (2013). The South Australian Marine Scalefish Fishery Status Report – Analysis of Fishery Statistics for 2012/13. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000565-8. SARDI Research Report Series No. 747. 44pp. South Australian Research and Development Institute SARDI Aquatic Sciences 2 Hamra Avenue West Beach SA 5024 Telephone: (08) 8207 5400 Facsimile: (08) 8207 5406 http://www.sardi.sa.gov.au DISCLAIMER The authors warrant that they have taken all reasonable care in producing this report. The report has been through the SARDI internal review process, and has been formally approved for release by the Research Chief, Aquatic Sciences. Although all reasonable efforts have been made to ensure quality, SARDI does not warrant that the information in this report is free from errors or omissions. -
Assessment of the Victorian Rock Lobster Fishery Against Commonwealth Guidelines for the Ecologically Sustainable Management of Fisheries
Assessment of the Victorian Rock Lobster Fishery against Commonwealth Guidelines for the Ecologically Sustainable Management of Fisheries A Submission to Environment Australia Fisheries Victoria Management Report Series; No 3 June 2003 © The State of Victoria, Department of Primary Industries, 2003 This publication is copyright. No part may be reproduced by any process except in accordance with the provisions of the Copyright Act 1968. Reproduction and the making available of this material for personal, in-house or non-commercial purposes is authorised, on condition that: • the copyright owner is acknowledged • no official connection is claimed • the material is made available without charge or at cost • the material is not subject to inaccurate, misleading or derogatory treatment. Requests for permission to reproduce or communicate this material in any way not permitted by this licence (or by the fair dealing provisions of the Copyright Act 1968) should be directed to the Fisheries Victoria, Copyright Officer, P.O. Box 500, East Melbourne, Victoria, 3002 ISSN 1448-1693 ISBN Published by the Department of Primary Industries Fisheries Victoria PO Box 500 East Melbourne Victoria 3002 Disclaimer: This publication may be of assistance to you, but the State of Victoria and its employees do not guarantee that the publication is without flaw or is wholly appropriate for your particular purposes and therefore disclaims all liability for any error, loss or other consequence which may arise from you relying on any information in this publication. Fishing regulations are a summary of the law at the time of publication and this brochure cannot be used in court. Fishing laws change from time to time. -
Kamath, Sandip Dayanand (2014) Identification and Characterisation of Novel Shellfish Allergens for Improved Diagosis. Phd Thesis, James Cook University
ResearchOnline@JCU This file is part of the following reference: Kamath, Sandip Dayanand (2014) Identification and characterisation of novel shellfish allergens for improved diagosis. PhD thesis, James Cook University. Access to this file is available from: http://researchonline.jcu.edu.au/43779/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://researchonline.jcu.edu.au/43779/ Identification and Characterisation of Novel Shellfish Allergens for Improved Diagnosis Thesis submitted by Sandip Dayanand KAMATH M.Sc. (Biotechnology) B.Pharm. (Pharmacy) For the degree of Doctor of Philosophy in the College of Public Health, Medical and Veterinary Sciences James Cook University October, 2014 i Statement of Contribution STATEMENT ON THE CONTRIBUTION OF OTHERS Nature of Assistance Contribution Name and Affiliation Intellectual support Project plan and • A/Prof. Andreas Lopata, James Cook development University • Prof. Jennifer Rolland, Monash University • Prof. Robyn O’Hehir, Monash University and The Alfred Hospital • Prof. Katie Allen, Murdoch Childrens Research Institute, • Prof. James Burnell, James Cook University Editorial support • A/Prof. Andreas Lopata, James Cook University • Prof. Jennifer Rolland, Monash University • Prof. Robyn O’Hehir, Monash University and The Alfred Hospital Grant proposal writing • -
Adelaide Desal Project Baited Remote Underwater Video Survey 2018
Adelaide Desalination Plant Baited Remote Underwater Video Surveys - 2018 Report to AdelaideAqua Pty Ltd James Brook (J Diversity Pty Ltd) Rev 0, December 2018 ADP BRUV Surveys - 2018 Cover photo: Fish at Noarlunga Tyre Reef, including yellowtail scad Trachurus novaezelandiae and trevally Pseudocaranx spp., April 2018. Acknowledgements Dimitri Colella was the technical and field lead on this project. Trent Brockhouse and Andrew Dendunnen of Whyalla Diving Services, and Sasha Whitmarsh assisted in the field. Dr Bryan McDonald provided advice on statistical analysis and review. Disclaimer The findings and opinions expressed in this publication are those of the author and do not necessarily reflect those of AdelaideAqua Pty Ltd. While reasonable efforts have been made to ensure the contents of this report are factually correct, the author does not accept responsibility for the accuracy and completeness of the contents. The author does not accept liability for any loss or damage that may be occasioned directly or indirectly through the use of, or reliance on, the contents of this report. Preferred citation: Brook, J (2018), Adelaide Desalination Plant Baited Remote Underwater Video Fish Surveys – 2018. Report for AdelaideAqua Pty Ltd, prepared by J Diversity Pty Ltd. Revision history Rev Date Comment Author Reviewed A 11/12/2018 Initial Draft J. Brook D. Colella B 12/12/2018 Minor changes J. Brook B McDonald 0 18/12/2018 Changes in response to review 2 ADP BRUV Surveys - 2018 Table of Contents Executive Summary ................................................................................................................................ -
South Australian Wild Fisheries Information and Statistics Report 2010/11
South Australian Wild Fisheries Information and Statistics Report 2010/11 Malcolm Knight and Angelo Tsolos SARDI Publication No. F2008/000804-4 SARDI Research Report Series No. 612 SARDI Aquatic Sciences PO Box 120 Henley Beach SA 5022 March 2012 South Australian Aquatic Sciences: Information Systems and Database Support Program South Australian Wild Fisheries Information and Statistics Report 2009/10 i South Australian Wild Fisheries Information and Statistics Report 2010/11 Malcolm Knight and Angelo Tsolos SARDI Publication No. F2008/000804-4 SARDI Research Report Series No. 612 March 2012 This publication may be cited as: Knight, M.A. and Tsolos, A (2012). South Australian Wild Fisheries Information and Statistics Report 2010/11. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2008/000804-4. SARDI Research Report Series No. 612. 57pp. Cover photos courtesy of Shane Roberts (Western King Prawns), William Jackson (Snapper), Adrian Linnane (Southern Rock Lobster) and Graham Hooper (Blue Crab). South Australian Research and Development Institute SARDI Aquatic Sciences 2 Hamra Avenue West Beach SA 5024 Telephone: (08) 8207 5400 Facsimile: (08) 8207 5406 http://www.sardi.sa.gov.au/ DISCLAIMER The authors warrant that they have taken all reasonable care in producing this report. The report has been through the SARDI Aquatic Sciences internal review process, and has been formally approved for release by the Chief, Aquatic Sciences. Although all reasonable efforts have been made to ensure quality, SARDI Aquatic Sciences does not warrant that the information in this report is free from errors or omissions. SARDI Aquatic Sciences does not accept any liability for the contents of this report or for any consequences arising from its use or any reliance placed upon it. -
Nonbreeding Eastern Curlews Numenius Madagascariensis Do
Division of Comparative Physiology and Biochemistry, Society for Integrative and Comparative Biology Nonbreeding Eastern Curlews Numenius madagascariensis Do Not Increase the Rate of Intake or Digestive Efficiency before Long‐Distance Migration because of an Apparent Digestive Constraint Author(s): Yuri Zharikov and Gregory A. Skilleter Source: Physiological and Biochemical Zoology, Vol. 76, No. 5 (September/October 2003), pp. 704-715 Published by: The University of Chicago Press. Sponsored by the Division of Comparative Physiology and Biochemistry, Society for Integrative and Comparative Biology Stable URL: http://www.jstor.org/stable/10.1086/376427 . Accessed: 04/11/2015 23:25 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp . JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. The University of Chicago Press and Division of Comparative Physiology and Biochemistry, Society for Integrative and Comparative Biology are collaborating with JSTOR to digitize, preserve and extend access to Physiological and Biochemical Zoology. http://www.jstor.org This content downloaded from 23.235.32.0 on Wed, 4 Nov 2015 23:25:52 PM All use subject to JSTOR Terms and Conditions 704 Nonbreeding Eastern Curlews Numenius madagascariensis Do Not Increase the Rate of Intake or Digestive Efficiency before Long- Distance Migration because of an Apparent Digestive Constraint Yuri Zharikov1,* Introduction Gregory A.