Etiology of Spring Dead Spot of Bermudagrass
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Cryptogamie, Mycologie, 2015, 36 (2): 225-236 © 2015 Adac. Tous droits réservés Poaceascoma helicoides gen et sp. nov., a new genus with scolecospores in Lentitheciaceae Rungtiwa PHOOkAmSAk a,b,c,d, Dimuthu S. mANAmGOdA c,d, Wen-jing LI a,b,c,d, Dong-Qin DAI a,b,c,d, Chonticha SINGTRIPOP a,b,c,d & kevin d. HYdE a,b,c,d* akey Laboratory for Plant diversity and Biogeography of East Asia, kunming Institute of Botany, Chinese Academy of Sciences, kunming 650201, China bWorld Agroforestry Centre, East and Central Asia, kunming 650201, China cInstitute of Excellence in Fungal Research, mae Fah Luang University, Chiang Rai 57100, Thailand dSchool of Science, mae Fah Luang University, Chiang Rai 57100, Thailand Abstract – An ophiosphaerella-like species was collected from dead stems of a grass (Poaceae) in Northern Thailand. Combined analysis of LSU, SSU and RPB2 gene data, showed that the species clusters with Lentithecium arundinaceum, Setoseptoria phragmitis and Stagonospora macropycnidia in the family Lentitheciaceae and is close to katumotoa bambusicola and Ophiosphaerella sasicola. Therefore, a monotypic genus, Poaceascoma is introduced to accommodate the scolecosporous species Poaceascoma helicoides. The species has similar morphological characters to the genera Acanthophiobolus, Leptospora and Ophiosphaerella and these genera are compared. Lentitheciaceae / Leptospora / Ophiosphaerella / phylogeny InTRoDuCTIon Lentitheciaceae was introduced by Zhang et al. (2012) to accommodate massarina-like species in the suborder Massarineae. In the recent monograph of Dothideomycetes (Hyde et al., 2013), the family Lentitheciaceae comprised the genera Lentithecium, katumotoa, keissleriella and Tingoldiago and all species had fusiform to cylindrical, 1-3-septate ascospores and mostly occurred on grasses. -
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cryptogamie Mycologie 2019 ● 40 ● 7 Vittaliana mangrovei Devadatha, Nikita, A.Baghela & V.V.Sarma, gen. nov, sp. nov. (Phaeosphaeriaceae), from mangroves near Pondicherry (India), based on morphology and multigene phylogeny Bandarupalli DEVADATHA, Nikita MEHTA, Dhanushka N. WANASINGHE, Abhishek BAGHELA & V. Venkateswara SARMA art. 40 (7) — Published on 8 November 2019 www.cryptogamie.com/mycologie DIRECTEUR DE LA PUBLICATION : Bruno David, Président du Muséum national d’Histoire naturelle RÉDACTEUR EN CHEF / EDITOR-IN-CHIEF : Bart BuyCk ASSISTANT DE RÉDACTION / ASSISTANT EDITOR : Étienne CAyEuX ([email protected]) MISE EN PAGE / PAGE LAYOUT : Étienne CAyEuX RÉDACTEURS ASSOCIÉS / ASSOCIATE EDITORS Slavomír AdAmčík Institute of Botany, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, Sk-84523, Bratislava, Slovakia André APTROOT ABL Herbarium, G.v.d. Veenstraat 107, NL-3762 Xk Soest, The Netherlands Cony decock Mycothèque de l’université catholique de Louvain, Earth and Life Institute, Microbiology, université catholique de Louvain, Croix du Sud 3, B-1348 Louvain-la- Neuve, Belgium André FRAITURE Botanic Garden Meise, Domein van Bouchout, B-1860 Meise, Belgium kevin HYDE School of Science, Mae Fah Luang university, 333 M.1 T.Tasud Muang District - Chiang Rai 57100, Thailand Valérie HOFSTETTER Station de recherche Agroscope Changins-Wädenswil, Dépt. Protection des plantes, Mycologie, CH-1260 Nyon 1, Switzerland Sinang HONGSANAN College of life science and oceanography, ShenZhen university, 1068, Nanhai Avenue, Nanshan, ShenZhen 518055, China egon HorAk Schlossfeld 17, A-6020 Innsbruck, Austria Jing LUO Department of Plant Biology & Pathology, Rutgers university New Brunswick, NJ 08901, uSA ruvishika S. JAYAWARDENA Center of Excellence in Fungal Research, Mae Fah Luang university, 333 M. -
Molecular Systematics of the Marine Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 155–173. 2009. doi:10.3114/sim.2009.64.09 Molecular systematics of the marine Dothideomycetes S. Suetrong1, 2, C.L. Schoch3, J.W. Spatafora4, J. Kohlmeyer5, B. Volkmann-Kohlmeyer5, J. Sakayaroj2, S. Phongpaichit1, K. Tanaka6, K. Hirayama6 and E.B.G. Jones2* 1Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand; 2Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand; 3National Center for Biothechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, U.S.A.; 5Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan *Correspondence: E.B. Gareth Jones, [email protected] Abstract: Phylogenetic analyses of four nuclear genes, namely the large and small subunits of the nuclear ribosomal RNA, transcription elongation factor 1-alpha and the second largest RNA polymerase II subunit, established that the ecological group of marine bitunicate ascomycetes has representatives in the orders Capnodiales, Hysteriales, Jahnulales, Mytilinidiales, Patellariales and Pleosporales. Most of the fungi sequenced were intertidal mangrove taxa and belong to members of 12 families in the Pleosporales: Aigialaceae, Didymellaceae, Leptosphaeriaceae, Lenthitheciaceae, Lophiostomataceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae, Phaeosphaeriaceae, Pleosporaceae, Testudinaceae and Trematosphaeriaceae. Two new families are described: Aigialaceae and Morosphaeriaceae, and three new genera proposed: Halomassarina, Morosphaeria and Rimora. -
101 Dothideomycetes Genomes: a Test Case for Predicting Lifestyles and Emergence of Pathogens
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 96: 141–153 (2020). 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens S. Haridas1, R. Albert1,2, M. Binder3, J. Bloem3, K. LaButti1, A. Salamov1, B. Andreopoulos1, S.E. Baker4, K. Barry1, G. Bills5, B.H. Bluhm6, C. Cannon7, R. Castanera1,8,20, D.E. Culley4, C. Daum1, D. Ezra9, J.B. Gonzalez10, B. Henrissat11,12,13, A. Kuo1, C. Liang14,21, A. Lipzen1, F. Lutzoni15, J. Magnuson4, S.J. Mondo1,16, M. Nolan1, R.A. Ohm1,17, J. Pangilinan1, H.-J. Park10, L. Ramírez8, M. Alfaro8, H. Sun1, A. Tritt1, Y. Yoshinaga1, L.-H. Zwiers3, B.G. Turgeon10, S.B. Goodwin18, J.W. Spatafora19, P.W. Crous3,17*, and I.V. Grigoriev1,2* 1US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; 2Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, USA; 3Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands; 4Functional and Systems Biology Group, Environmental Molecular Sciences Division, Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA; 5University of Texas Health Science Center, Houston, TX, USA; 6University of Arkansas, Fayelletville, AR, USA; 7Texas Tech University, Lubbock, TX, USA; 8Institute for Multidisciplinary Research in Applied Biology (IMAB-UPNA), Universidad Pública de Navarra, Pamplona, Navarra, Spain; 9Agricultural Research Organization, Volcani Center, Rishon LeTsiyon, Israel; 10Section -
The Genus Pseudodidymosphaeria
Asian Journal of Mycology 1(1): 1–8 (2018) ISSN TBA www.asianjournalofmycology.org Article Doi 10.5943/ajom/1/1/1 Copyright © Mushroom Research Foundation The genus Pseudodidymosphaeria Thambugala KM1, Peršoh D2, Perera RH1 and Hyde KD1 1Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2Geobotany, Ruhr-Universität Bochum, Universitätsstraße 150, 44780 Bochum, Germany Thambugala KM, Peršoh D, Perera RH, Hyde KD 2018 – The genus Pseudodidymosphaeria. Asian Journal of Mycology 1(1), 1–8, Doi 10.5943/ajom/1/1/1 Abstract The genus Pseudodidymosphaeria is revisited with an overview of its history, a generic description with amendments and notes and illustrations of the genus. Molecular data from two species of the genus are analyzed using single and combined ITS and LSU gene datasets and the workflow of phylogenetic analysis is provided in an appendix. The genus Pseudodidymosphaeria formed a well-supported clade in the family Massarinaceae. Key words – ARB – ITS – LSU – Massarinaceae – Poaceae Introduction The family Massarinaceae was established to accommodate four genera, Keissleriella, Massarina, Metasphaeria, Pseudotrichia, and Trichometasphaeria (Munk 1956). Barr (1987) treated Massarinaceae as a synonym of Lophiostomataceae. However, these two families are now recognized as separate lineages in Pleosporales, Dothideomycetes (Zhang et al. 2012, Hyde et al. 2013, Thambugala et al. 2015b, Wijayawardene et al. 2018). During the past 60 years many genera were included or removed from Massarinaceae depending on the various taxonomic treatments and accessibility of sequence data (Zhang et al. 2012, Hyde et al. 2013, Wijayawardene et al. 2014, 2017, Tanaka et al. 2015, Thambugala et al. -
In Vitro Morphogenesis of Arabidopsis to Search for Novel Endophytic Fungi Modulating Plant Growth” Dovana, F., Mucciarelli, M., Mascarello, M., Fusconi, A
UNIVERSITA’ DEGLI STUDI DEL PIEMONTE ORIENTALE DiSIT-Dipartimento di Scienze e Innovazione Tecnologica Dottorato di ricerca in Scienze Ambientali (Acque interne e agroecosistemi) XXVII Ciclo Interazioni tra piante e endofiti fungini: effetti di PGP-HSF e di nuovi isolati su organismi modello Tutor: Prof. Graziella Berta Prof. Guido Lingua Ph.D. Student: Dott. Francesco Dovana Coordinatore: Prof. Giorgio Malacarne Indice Primo capitolo ........................................................................................................................... 3 Introduzione .......................................................................................................................... 3 Materiali e metodi ................................................................................................................. 7 1. Isolamento dei funghi endofiti .................................................................................. 7 2. Identificazione molecolare ........................................................................................ 8 2.1. Estrazione del DNA ................................................................................................ 8 2.2. Identificazione dei campioni e realizzazione dei un albero filogenetico che evidenzi le relazioni tra i diversi isolati ............................................................................ 10 3. Semina di Arabidopsis thaliana e inoculo degli endofiti ......................................... 11 3.1. Protocollo per la semina di Arabidopsis e l’inoculo -
Necrotrophic Pathogens of Wheat
This article was originally published in the Encyclopedia of Food Grains published by Elsevier, and the attached copy is provided by Elsevier for the author's benefit and for the benefit of the author’s institution, for non-commercial research and educational use including without limitation use in instruction at your institution, sending it to specific colleagues who you know, and providing a copy to your institution’s administrator. All other uses, reproduction and distribution, including without limitation commercial reprints, selling or licensing copies or access, or posting on open internet sites, your personal or institution’s website or repository, are prohibited. For exceptions, permission may be sought for such use through Elsevier's permissions site at: http://www.elsevier.com/locate/permissionusematerial Oliver R.P., Tan K.-C. and Moffat C.S. (2016) Necrotrophic Pathogens of Wheat. In: Wrigley, C., Corke, H., and Seetharaman, K., Faubion, J., (eds.) Encyclopedia of Food Grains, 2nd Edition, pp. 273-278. Oxford: Academic Press. © 2016 Elsevier Ltd. All rights reserved. Author's personal copy Necrotrophic Pathogens of Wheat RPOliver, K-C Tan, and CS Moffat, Curtin University, Bentley, WA, Australia ã 2016 Elsevier Ltd. All rights reserved. Topic Highlights give information of trends over decades (Brennan and Murray, 1988, 1998). Table 2 lists estimates of current wheat disease • Diseases of wheat. losses in Australia. It can be seen that across all regions, TS is • Genetic analysis of resistance to tan spot and Septoria the major disease, currently costing more than all rusts com- nodorum blotch (SNB) necrotrophic effectors. bined. SNB is restricted to Western Australia where it ranks as Tan spot effectors. -
Pseudodidymosphaeria Gen. Nov. in Massarinaceae
Phytotaxa 231 (3): 271–282 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.231.3.5 Pseudodidymosphaeria gen. nov. in Massarinaceae KASUN M. THAMBUGALA1, 2, 3, YU CHUNFANG4, ERIO CAMPORESI5, ALI H. BAHKALI6, ZUO-YI LIU1, * & KEVIN D. HYDE2, 3 1Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Xiaohe District, Guiyang City, Guizhou Province 550006, People’s Republic of China 2Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai. 57100, Thailand 4Institute of Basic Medical Sciences, Hubei University of Medicine, shiyan, Hubei Province, 442000, People’s Republic of China 5A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy; A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314, Brescia, Italy 6Department of Botany and Microbiology, King Saudi University, Riyadh, Saudi Arabia *Corresponding author: email: [email protected] Abstract Didymosphaeria spartii was collected from dead branches of Spartium junceum in Italy. Multi-gene phylogenetic analyses of ITS, 18S and 28S nrDNA sequence data were carried out using maximum likelihood and Bayesian analysis. The resulting phylogenetic trees showed this to be a new genus in a well-supported clade in Massarinaceae. A new genus Pseudodidymo- sphaeria is therefore introduced to accommodate this species based on molecular phylogeny and morphology. A illustrated account is provided for the new genus with its asexual morph and the new taxon is compared with Massarina and Didymo- sphaeria. -
Hidden Fungi: Combining Culture-Dependent and -Independent DNA Barcoding Reveals Inter-Plant Variation in Species Richness of Endophytic Root Fungi in Elymus Repens
Journal of Fungi Article Hidden Fungi: Combining Culture-Dependent and -Independent DNA Barcoding Reveals Inter-Plant Variation in Species Richness of Endophytic Root Fungi in Elymus repens Anna K. Høyer and Trevor R. Hodkinson * Botany, School of Natural Sciences, Trinity College Dublin, The University of Dublin, Dublin D2, Ireland; [email protected] * Correspondence: [email protected] Abstract: The root endophyte community of the grass species Elymus repens was investigated using both a culture-dependent approach and a direct amplicon sequencing method across five sites and from individual plants. There was much heterogeneity across the five sites and among individual plants. Focusing on one site, 349 OTUs were identified by direct amplicon sequencing but only 66 OTUs were cultured. The two approaches shared ten OTUs and the majority of cultured endo- phytes do not overlap with the amplicon dataset. Media influenced the cultured species richness and without the inclusion of 2% MEA and full-strength MEA, approximately half of the unique OTUs would not have been isolated using only PDA. Combining both culture-dependent and -independent methods for the most accurate determination of root fungal species richness is therefore recom- mended. High inter-plant variation in fungal species richness was demonstrated, which highlights the need to rethink the scale at which we describe endophyte communities. Citation: Høyer, A.K.; Hodkinson, T.R. Hidden Fungi: Combining Culture-Dependent and -Independent Keywords: DNA barcoding; Elymus repens; fungal root endophytes; high-throughput amplicon DNA Barcoding Reveals Inter-Plant sequencing; MEA; PDA Variation in Species Richness of Endophytic Root Fungi in Elymus repens. J. Fungi 2021, 7, 466. -
Phoma Narcissi) Strains for Enzymatic Attack and Defence Capabilities Against Phytoalexins
Eur J Plant Pathol (2016) 145:89–102 DOI 10.1007/s10658-015-0817-2 Interactive physiological potential of Peyronellaea curtisii (=Phoma narcissi) strains for enzymatic attack and defence capabilities against phytoalexins Katarzyna Hrynkiewicz & Paweł Deka & Małgorzata Ruszkiewicz-Michalska & Dominika Thiem & Adriana Szmidt-Jaworska Accepted: 9 November 2015 /Published online: 18 November 2015 # The Author(s) 2015. This article is published with open access at Springerlink.com Abstract Phytopathogenic fungi use a variety of strat- alone. Tested cellulolytic, pectolytic and amylolytic ac- egies to infect hosts and have a diverse sensitivity to the tivities were strain specific. A high level of amylase natural defence mechanisms of the host plant, e.g. syn- activity was positively correlated with cellulase activity thesis of phytoalexins. Many important pathogens of but negatively correlated with pectolytic activity. crops belong to the problematic genus Phoma,including Moreover, some strains suppressed phytoalexin produc- species recently reallocated to Peyronellaea. The work tion in Hippeastrum scales and were resistant to various presents: (1) molecular identification of five pathogenic concentrations of phytoalexin added to the culture me- strains of Peyronellaea (syn. Phoma) based on two loci, dium. Based on these results, we suggest that pathoge- actin (ACT) and β-tubulin (TUB), and morphological nicity in P. curtisii strains is complex and that it may be observations; (2) differentiation of these strains associated with their interactive physiological potential based on their enzymatic activity; and (3) their effect for enzymatic attack and defence capabilities against on biosynthesis of phytoalexin in Hippeastrum scales. phytoalexin. Phylogenetic analysis showed a close relationship be- tween our strains and Peyronellaea curtisii (syn. -
Splanchnonema-Like Species in Pleosporales: Introducing Pseudosplanchnonema Gen
Phytotaxa 231 (2): 133–144 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.231.2.2 Splanchnonema-like species in Pleosporales: introducing Pseudosplanchnonema gen. nov. in Massarinaceae K.W. THILINI CHETHANA1,2,3, MEI LIU1, HIRAN A. ARIYAWANSA2,3, SIRINAPA KONTA2,3, DHANUSHKA N. WANASINGHE2,3, YING ZHOU1, JIYE YAN1, ERIO CAMPORESI4, TIMUR S. BULGAKOV5, EKACHAI CHUKEATIROTE2,3, KEVIN D. HYDE2,3, ALI H. BAHKALI6, JIANHUA LIU1,* & XINGHONG LI1,* 1Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China 2Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4A.M.B. Gruppo Micologico Forlivese “A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy; A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314, Brescia, Italy; Società per gli Studi Naturalistici della Romagna, C.P. 144, Bagnaca- vallo (RA), Italy 5Academy of Biology and Biotechnology, Southern Federal University, Rostov-on-Don 344090, Russia 6 Botany and Microbiology Department, College of Science, King Saud University, Riyadh, KSA 11442, Saudi Arabia. * e-mail: [email protected] (J.H. Liu), [email protected] (X. H. Li) Abstract In this paper we introduce a new genus Pseudosplanchnonema with P. phorcioides comb. nov., isolated from dead branches of Acer campestre and Morus species. The new genus is confirmed based on morphology and phylogenetic analyses of se- quence data. Phylogenetic analyses based on combined LSU and SSU sequence data showed that P. -
Phaeosphaeriaceae) from Italy
Mycosphere 6 (6): 716–728 (2015) ISSN 2077 7019 www.mycosphere.org Article Mycosphere Copyright © 2015 Online Edition Doi 10.5943/mycosphere/6/6/7 Two novel species of Vagicola (Phaeosphaeriaceae) from Italy Jayasiri SC1, Wanasinghe DN1,2, Ariyawansa HA3, Jones EBG4, Kang JC5, Promputtha I6, Bahkali AH4, Bhat J7,8, Camporesi E9 and Hyde KD1, 2, 4 1Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2World Agro forestry Centre East and Central Asia Office, 132 Lanhei Road, Kunming 650201, China 3Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang, 550006, Guizhou, China 4Botany and Microbiology Department, College of Science, King Saud University, Riyadh, 1145, Saudi Arabia 5Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang 550025, Guizhou Province, China 6Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, 50200, Thailand 7No. 128/1-J, Azad Housing Society, Curca, P.O. Goa Velha, 403108, India 8Department of Botany, Goa University, Goa, 403 206, India 9A.M.B. GruppoMicologicoForlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy; A.M.B. CircoloMicologico “Giovanni Carini”, C.P. 314, Brescia, Italy; Società per gliStudiNaturalisticidella Romagna, C.P. 144, Bagnacavallo (RA), Italy Jayasiri SC, Wanasinghe DN, Ariyawansa HA, Jones EBG, Kang JC, Promputtha I, Bahkali AH, Bhat J, Camporesi E, Hyde KD 2015 – Two novel species of Vagicola (Phaeosphaeriaceae) from Italy. Mycosphere 6(6), 716–728, Doi 10.5943/mycosphere/6/6/7 Abstract Phaeosphaeriaceae is a large and important family in the order Pleosporales, comprising economically important plant pathogens.