Evaluation of REG4 for Early Diagnosis and Prognosis Of

Total Page:16

File Type:pdf, Size:1020Kb

Evaluation of REG4 for Early Diagnosis and Prognosis Of Human Pathology (2011) 42, 1401–1409 www.elsevier.com/locate/humpath Original contribution Evaluation of REG4 for early diagnosis and prognosis of gastric cancer☆ Hou-Quan Tao MD a,⁎, Xu-Jun He MB a, Ying-Yu Ma MS a, Hui-Ju Wang MS a, Ying-Jie Xia MB a, Zai-Yuan Ye MS a, Zhong-Sheng Zhao MS b aKey Laboratory of Gastroenterology of Zhejiang Province, Hangzhou, 310014, China bDepartment of Pathology, Zhejiang Provincial People's Hospital, Hangzhou, 310014, China Received 2 April 2010; revised 30 July 2010; accepted 3 August 2010 Keywords: Summary We explored the correlation between the development of gastric cancer and the concentration REG4; of REG4 and hence the suitability of REG4 as an indicator of the prognosis of patients with GC. Real- Gastric cancer time polymerase chain reaction was conducted to detect REG4 messenger RNA expression. The amount of the REG4 protein was measured by immunohistochemistry staining of tissue and enzyme-linked immunosorbent assay of serum. Serum carcinoembryonic antigen and carbohydrate antigen 19-9 concentrations were measured using a commercial automated immunoassay. Real-time polymerase chain reaction results confirmed that REG4 was significantly up-regulated in gastric cancer compared with paired normal mucosa (P b .001). Immunohistochemistry staining revealed that high expression of REG4 correlated with diffuse type, poor differentiation, lymph node metastasis, distant metastasis, and TNM stage III or IV. The mean survival time for patients in the REG4-positive group was significantly less than that in the REG4-negative group (P = .013). The percentage of serum samples that were REG4 positive was 44.0%, which was higher than that for serum carcinoembryonic antigen (P = .039) or carbohydrate antigen 19-9 (P = .012) in TNM stage I and was significantly higher (P = .031) than that in TNM stage II. Thus, REG4 may be not only a prognostic indicator but also a better serum marker than carcinoembryonic antigen and carbohydrate antigen 19-9 for early diagnosis of gastric cancer. © 2011 Elsevier Inc. All rights reserved. 1. Introduction habits. GC in China constitutes approximately 33% of all worldwide GC cases [1]. As in all cancers, early detection Gastric cancer (GC) is one of the most common human remains the most promising approach to improve the long- cancers and is affected by environmental and behavioral term survival rate. Assessment of tumor markers in serum may be useful for this purpose. There are 2 available tumor markers for GC, carcinoembryonic antigen (CEA) and carbohydrate antigen 19-9 (CA19-9). However, neither is ☆ This work was carried out with the support of grants from Zhejiang an appropriate option for early screening, because preoper- Provincial Program for the Cultivation of High-Level Innovative Health ative positivity for these markers is highly reliant on tumor Talents and the Natural Science Foundation of Zhejiang Province (Grant No. Y207763). stage at the time of detection [2]. Establishment of screening ⁎ Corresponding author. strategies through the development of novel serum markers E-mail address: [email protected] (H. -Q. Tao). that are more specific and more sensitive to GC is thus 0046-8177/$ – see front matter © 2011 Elsevier Inc. All rights reserved. doi:10.1016/j.humpath.2010.08.023 1402 H. -Q. Tao et al. urgently needed. Genes encoding transmembrane/secretory 2. Materials and methods proteins expressed specifically in cancers may be ideal diagnostic biomarkers [3]. The REG gene family belongs to 2.1. Blood Samples and isolation of serum the calcium-dependent lectin gene superfamily, which is mainly involved in hepatic, pancreatic, gastric, and intestinal Blood samples were obtained from 47 male and 23 female cell proliferation or differentiation. healthy donors (22-68 years old) and 65 male and 27 female The human REG gene family consists of 4 secretory and GC patients (32-86 years old) who were inpatients at the structurally unique proteins that are expressed in different Zhejiang Provincial People's Hospital between January and tissues and play different biological roles [4-6]. REG4,a June 2008. Samples were centrifuged for 10 minutes at member of the REG gene family, which was originally 1000 × g in a swing bucket rotor at 4°C, and the serum was identified by high-throughput sequencing of a complemen- stored in cryovials at −80°C until analysis. Tumor staging tary DNA (cDNA) library derived from a patient with was conducted according to the TNM system [19]. inflammatory bowel disease, maps to chromosome 1 and encodes a 158-amino-acid protein that includes a signal peptide of 22 amino acids and a conserved calcium- 2.2. Tissue samples dependent recognition domain [7]. Although various normal tissues express REG4, the concentrations in normal tissues One hundred ninety-two paraffin specimens of GC (138 are much lower than those in cancerous tissues [8]. In tumor male and 54 female patients aged 29-82 years) were acquired tissues of the gastrointestinal tract and pancreas or in cases in from Zhejiang Provincial People's Hospital, having been which these tissues are inflamed, REG4 can be seen to be collected from January 2000 to December 2001. All cases overexpressed in situ or in ectopias [9]. In colorectal were classified according to the World Health Organization carcinoma (CRC), up-regulation of REG4 was associated Pathological Classification of Tumors. There were 68 cases with tumor differentiation, stage, and lymph node metastasis of well or moderately differentiated tumors and 124 cases of [8,10]. High-throughput analysis showed that REG4 was poor or no differentiation. Histologically, there were 12 cases overexpressed in GC, CRC, pancreatic cancer, and prostate of papillary adenocarcinoma, 112 cases of tubular adeno- cancer but not in lung and breast cancer, suggesting that carcinoma, 58 cases of mucinous adenocarcinoma, and 10 REG4 may be tissue-specific and serve as a marker for cases of signet-ring cell carcinoma. There were 76 cases of tumors of the digestive system and prostate [11-14]. The intestinal histologic type and 116 cases of diffuse histologic REG4 protein is a growth promoter and may function as an type according to the Lauren classification. In 102 cases, antiapoptotic factor early in the development of GC [15,16]. there were lymph node metastases, whereas in 90 cases, no In addition, REG4 is overexpressed in prostate cancer, where such metastases were apparent. Eighteen cases were TNM it is associated with progression and metastasis of hormone- stage I, 45 cases were stage II, 62 cases were stage III, and 67 resistant disease [17]. cases were stage IV. None of the patients had received any Quantitative real-time reverse transcriptase-polymerase radiotherapy or chemotherapy in advance of the operation. chain reaction (PCR) has been used to investigate REG4 Specimens were fixed in formalin and embedded in paraffin. messenger RNA (mRNA) expression in GC cell lines and All patients were followed for more than 5 years. tissues. Results indicate that REG4 is highly overexpressed Thirty-seven fresh specimens from patients with GC were in GC cell lines and tissues established from peritoneal acquired from Zhejiang Provincial People's Hospital from − dissemination, and the quantity of REG4 correlated with wall January 2008 to December 2008 and stored at 80°C until penetration, suggesting that REG4 is involved in the use to detect relative REG4 mRNA expression by real-time peritoneal dissemination of GCs and may be a novel marker PCR. Surrounding normal gastric mucosa also was obtained for such disease [14,18]. and studied. Early detection remains the most promising approach to The project was approved by the ethics committee of improving the long-term survival of patients with GC, and Zhejiang Provincial People's Hospital. serum markers seem to play important roles in its diagnosis. REG4, a secretory protein, could be an alternative serum 2.3. REG4 mRNA expression analysis marker. Few researchers have studied the correlation between REG4 expression and clinicopathologic features Total RNA was isolated with Trizol (Invitrogen, Carls- of GC. In this study, we used immunohistochemical staining bad, CA). A total of 2 μg RNA was reverse transcribed using and enzyme-linked immunosorbent assays (ELISAs) to the SuperScript II RNase-Reverse Transcriptase System determine REG4 expression in sera and tissue and also (Invitrogen). The cDNA was then subjected to real-time PCR investigated the serum concentrations of CEA and CA19-9 with primers specific for REG4. A 0.4-μL aliquot of each using a commercially available automated immunoassay. cDNA and 0.4 μmol/L of forward and reverse primers were The correlation between REG4 expression and tumor added to SYBR Premix ExTaq (Perfect Real Time; TaKaRa invasion and metastasis and the significance of serum Bio Inc, Otsu, Japan) in a total volume of 25 μL. The REG4 concentrations were analyzed. amplification protocol was as follows: denaturation at 95°C REG4 in GC diagnosis and prognosis 1403 for 4 minutes and 40 cycles of 95°C for 10 seconds, 55°C for was added to a 96-well plate that had been coated with REG4 20 seconds, and 72°C for 20 seconds. The sequence of the antibody and incubated at 37°C for 2 hours. Then, 100 μLof forward primer for REG4 was 5′-GCC CTT AGA GTC TTG biotin-antibody working solution was added to each well, and GTT GC-3′ and that of the reverse primer was 5′-GCC ATC the plate was incubated at 37°C for 1 hour, followed by TTC CTC CTA CCC TG-3′. The sequence of the primers addition of 100 μL of horseradish peroxidase–avidin used for the control GAPDH was 5′- TGA AGG TCG GAG working solution. After incubation at 37°C for 1 hour, the TCA ACG G-3′ (forward) and 5′-CTG GAA GAT GGT contents of each well were aspirated and replaced with 90 μL GAT GGG ATT-3′ (reverse; Invitrogen).
Recommended publications
  • Human Lectins, Their Carbohydrate Affinities and Where to Find Them
    biomolecules Review Human Lectins, Their Carbohydrate Affinities and Where to Review HumanFind Them Lectins, Their Carbohydrate Affinities and Where to FindCláudia ThemD. Raposo 1,*, André B. Canelas 2 and M. Teresa Barros 1 1, 2 1 Cláudia D. Raposo * , Andr1 é LAQVB. Canelas‐Requimte,and Department M. Teresa of Chemistry, Barros NOVA School of Science and Technology, Universidade NOVA de Lisboa, 2829‐516 Caparica, Portugal; [email protected] 12 GlanbiaLAQV-Requimte,‐AgriChemWhey, Department Lisheen of Chemistry, Mine, Killoran, NOVA Moyne, School E41 of ScienceR622 Co. and Tipperary, Technology, Ireland; canelas‐ [email protected] NOVA de Lisboa, 2829-516 Caparica, Portugal; [email protected] 2* Correspondence:Glanbia-AgriChemWhey, [email protected]; Lisheen Mine, Tel.: Killoran, +351‐212948550 Moyne, E41 R622 Tipperary, Ireland; [email protected] * Correspondence: [email protected]; Tel.: +351-212948550 Abstract: Lectins are a class of proteins responsible for several biological roles such as cell‐cell in‐ Abstract:teractions,Lectins signaling are pathways, a class of and proteins several responsible innate immune for several responses biological against roles pathogens. such as Since cell-cell lec‐ interactions,tins are able signalingto bind to pathways, carbohydrates, and several they can innate be a immuneviable target responses for targeted against drug pathogens. delivery Since sys‐ lectinstems. In are fact, able several to bind lectins to carbohydrates, were approved they by canFood be and a viable Drug targetAdministration for targeted for drugthat purpose. delivery systems.Information In fact, about several specific lectins carbohydrate were approved recognition by Food by andlectin Drug receptors Administration was gathered for that herein, purpose. plus Informationthe specific organs about specific where those carbohydrate lectins can recognition be found by within lectin the receptors human was body.
    [Show full text]
  • In Silico Characterization of Class II Plant Defensins from Arabidopsis
    bioRxiv preprint doi: https://doi.org/10.1101/2020.04.27.065185; this version posted September 7, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. In silico Characterization of Class II Plant Defensins from Arabidopsis thaliana Laura S.M. Costa1,2, Állan S. Pires1, Neila B. Damaceno1, Pietra O. Rigueiras1, Mariana R. Maximiano1, Octavio L. Franco1,2,3, William F. Porto3,4* 1 Centro de Análises Proteômicas e Bioquímicas. Programa de Pós-Graduação em Ciências Genômicas e Biotecnologia, Universidade Católica de Brasília, Brasília-DF, Brazil. 2 Departamento de Biologia, Programa de Pós-Graduação em Genética e Biotecnologia, Universidade Federal de Juiz de Fora, Campus Universitário, Juiz de Fora-MG, Brazil. 3 S-Inova Biotech, Pós-Graduação em Biotecnologia, Universidade Católica Dom Bosco, Campo Grande-MS, Brazil. 4 Porto Reports, Brasília-DF, Brazil – www.portoreports.com *Corresponding author: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.04.27.065185; this version posted September 7, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract Defensins comprise a polyphyletic group of multifunctional defense peptides. Cis- defensins, also known as cysteine stabilized αβ (CSαβ) defensins, are one of the most ancient defense peptide families.
    [Show full text]
  • LJELSR: a Strengthened Version of JELSR for Feature Selection and Clustering
    Article LJELSR: A Strengthened Version of JELSR for Feature Selection and Clustering Sha-Sha Wu 1, Mi-Xiao Hou 1, Chun-Mei Feng 1,2 and Jin-Xing Liu 1,* 1 School of Information Science and Engineering, Qufu Normal University, Rizhao 276826, China; [email protected] (S.-S.W.); [email protected] (M.-X.H.); [email protected] (C.-M.F.) 2 Bio-Computing Research Center, Harbin Institute of Technology, Shenzhen 518055, China * Correspondence: [email protected]; Tel.: +086-633-3981-241 Received: 4 December 2018; Accepted: 7 February 2019; Published: 18 February 2019 Abstract: Feature selection and sample clustering play an important role in bioinformatics. Traditional feature selection methods separate sparse regression and embedding learning. Later, to effectively identify the significant features of the genomic data, Joint Embedding Learning and Sparse Regression (JELSR) is proposed. However, since there are many redundancy and noise values in genomic data, the sparseness of this method is far from enough. In this paper, we propose a strengthened version of JELSR by adding the L1-norm constraint on the regularization term based on a previous model, and call it LJELSR, to further improve the sparseness of the method. Then, we provide a new iterative algorithm to obtain the convergence solution. The experimental results show that our method achieves a state-of-the-art level both in identifying differentially expressed genes and sample clustering on different genomic data compared to previous methods. Additionally, the selected differentially expressed genes may be of great value in medical research. Keywords: differentially expressed genes; feature selection; L1-norm; sample clustering; sparse constraint 1.
    [Show full text]
  • Organoid ( ENR )
    US 20190204299A1 ( 19) United States ( 12) Patent Application Publication ( 10 ) Pub . No. : US 2019 /0204299 A1 Mead et al. (43 ) Pub . Date : Jul. 4 , 2019 ( 54 ) SINGLE - CELL GENOMIC METHODS TO Publication Classification GENERATE EX VIVO CELL SYSTEMS THAT (51 ) Int . Ci. RECAPITULATE IN VIVO BIOLOGY WITH GOIN 33 /50 (2006 . 01 ) IMPROVED FIDELITY A61K 35 / 17 ( 2006 .01 ) C120 1 /6869 ( 2006 .01 ) ( 71) Applicants :Massachusetts Institute of C12N 5 /071 (2006 .01 ) Technology , Cambridge, MA (US ) ; The 2 ) U . S . CI. Brigham and Women ' s Hospital, Inc. , CPC . .. .. GOIN 33 /5023 ( 2013 .01 ) ; A6IK 35 / 17 Boston ,MA (US ) (2013 .01 ) ; C12Q 1 /6869 (2013 .01 ) ; GOIN 33 /5008 ( 2013 .01 ) ; CI2N 2501 / 999 ( 2013 .01 ) ; (72 ) Inventors : Benjamin E . Mead , Cambridge, MA C12N 5 / 068 (2013 . 01 ) ; C12N 2501 / 11 (US ) ; Jose Ordovas -Montanes , ( 2013 .01 ) ; C12N 2501/ 40 ( 2013 .01 ) ; C12N Cambridge , MA (US ); Alexander K . 2501 /998 ( 2013. 01 ) ; GOIN 33 /5011 (2013 . 01 ) Shalek , Cambridge , MA (US ) ; Jeffrey (57 ) ABSTRACT Karp , Boston , MA (US ) ; Robert Disclosed here is a generally applicable framework that Langer , Cambridge , MA (US ) utilizes massively - parallel single - cell RNA - seq to compare cell types/ states found in vivo to those of in vitro models . (21 ) Appl. No. : 16 /240 , 361 Furthermore , Applicants leverage identified discrepancies to improve model fidelity . Applicants uncover fundamental gene expression differences in lineage - defining genes ( 22 ) Filed : Jan . 4 , 2019 between in vivo systems and in vitro systems. Using this information , molecular interventions are identified for ratio nally improving the physiological fidelity of the in vitro Related U .
    [Show full text]
  • An Integrated Genome-Wide Approach to Discover Tumor- Specific Antigens As Potential Immunologic and Clinical Targets in Cancer
    Published OnlineFirst November 7, 2012; DOI: 10.1158/0008-5472.CAN-12-1656 Cancer Integrated Systems and Technologies Research An Integrated Genome-Wide Approach to Discover Tumor- Specific Antigens as Potential Immunologic and Clinical Targets in Cancer Qing-Wen Xu1, Wei Zhao1, Yue Wang8,9, Maureen A. Sartor11, Dong-Mei Han2, Jixin Deng10, Rakesh Ponnala8,9, Jiang-Ying Yang3, Qing-Yun Zhang3, Guo-Qing Liao4, Yi-Mei Qu4,LuLi5, Fang-Fang Liu6, Hong-Mei Zhao7, Yan-Hui Yin1, Wei-Feng Chen1,†, Yu Zhang1, and Xiao-Song Wang8,9 Abstract Tumor-specific antigens (TSA) are central elements in the immune control of cancers. To systematically explore the TSA genome, we developed a computational technology called heterogeneous expression profile analysis (HEPA), which can identify genes relatively uniquely expressed in cancer cells in contrast to normal somatic tissues. Rating human genes by their HEPA score enriched for clinically useful TSA genes, nominating candidate targets whose tumor-specific expression was verified by reverse transcription PCR (RT-PCR). Coupled with HEPA, we designed a novel assay termed protein A/G–based reverse serological evaluation (PARSE) for quick detection of serum autoantibodies against an array of putative TSA genes. Remarkably, highly tumor-specific autoantibody responses against seven candidate targets were detected in 4% to 11% of patients, resulting in distinctive autoantibody signatures in lung and stomach cancers. Interrogation of a larger cohort of 149 patients and 123 healthy individuals validated the predictive value of the autoantibody signature for lung cancer. Together, our results establish an integrated technology to uncover a cancer-specific antigen genome offering a reservoir of novel immunologic and clinical targets.
    [Show full text]
  • Jnsclcase20102 1..5
    J Neurosurg Case Lessons 1(3):CASE20102, 2021 DOI: 10.3171/CASE20102 Bilateral squamosal synostosis: unusual presentation of chromosome 1p12–1p13.3 deletion. Illustrative case Sarut Chaisrisawadisuk, MD, FRCST,1,4 Nithiwat Vatanavicharn, MD,2 Verayuth Praphanphoj, MD,3 Peter J. Anderson, DSc, FRACS,4,5 and Mark H. Moore, MBChB, FRACS4 1Division of Plastic Surgery, Department of Surgery, and 2Division of Medical Genetics, Department of Paediatrics, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand; 3Medical Genetics Center, Sai Mai District, Bangkok, Thailand; 4Cleft and Craniofacial South Australia, Women’s and Children’s Hospital, North Adelaide, South Australia, Australia; and 5Faculty of Health and Medical Sciences, University of Adelaide, Adelaide, South Australia, Australia BACKGROUND Squamosal sutures are minor sutures of the human skull. Early isolated fusion of the sutures (squamosal synostosis) is rarely found. OBSERVATIONS The authors report a case of a girl who presented with an abnormal head shape and bilateral squamosal synostosis. Genetic testing revealed a chromosome 1p12–1p13.3 deletion. She has been managed with conservative treatment of the synostosis. She has global developmental delay and multiple anomalies due to the chromosome abnormality. LESSONS Isolated squamosal suture synostosis could be an uncommon feature of chromosome 1p12–1p13.3 deletion. https://thejns.org/doi/abs/10.3171/CASE20102 KEYWORDS cranial sutures; craniosynostosis; chromosome 1p12–1p13.3 deletion The squamosal suture, one of the minor sutures of the human revealed chromosome 46,XX. She was born at 38 weeks of gestation. calvaria, sits between the temporal and parietal bones and extends Her physical examination at 1 year of age showed a widening of both from the pterion, curving around the temporal squama.1 The suture is parietal bones and an open anterior fontanelle.
    [Show full text]
  • 43411 REG4 Antibody
    Revision 1 C 0 2 - t REG4 Antibody a e r o t S Orders: 877-616-CELL (2355) [email protected] Support: 877-678-TECH (8324) 1 1 4 Web: [email protected] 3 www.cellsignal.com 4 # 3 Trask Lane Danvers Massachusetts 01923 USA For Research Use Only. Not For Use In Diagnostic Procedures. Applications: Reactivity: Sensitivity: MW (kDa): Source: UniProt ID: Entrez-Gene Id: WB H Endogenous 14 Rabbit Q9BYZ8 83998 Product Usage Information Application Dilution Western Blotting 1:1000 Storage Supplied in 10 mM sodium HEPES (pH 7.5), 150 mM NaCl, 100 µg/ml BSA and 50% glycerol. Store at –20°C. Do not aliquot the antibody. Specificity / Sensitivity REG4 Antibody recognizes endogenous levels of total human REG4 protein. REG4 antibody may weakly bind mouse Reg4. Species Reactivity: Human Source / Purification Polyclonal antibodies are produced by immunizing animals with a synthetic peptide corresponding to residues near the carboxy terminus of human REG4 protein. Antibodies are purified by protein A and peptide affinity chromatography. Background Reg4 (regenerating islet-derived protein 4) is a member of a multigene family of Reg proteins (1). Reg proteins are secreted glycoproteins belonging to the calcium (C-type) dependent lectin superfamily, although they can in fact bind polysaccharides, mannan, and heparin in the absence of calcium (2,3). Reg4 is expressed in the gastrointestinal (GI) tract, in normal colon mucosa, and is upregulated in colon adenocarcinoma, pancreatic cancer, gastric adenocarcinoma, and inflammatory bowel disease (Crohn’s disease and ulcerative colitis) (4,5). It has recently been shown that Reg4 marks a population of deep secretory cells at the bottom of the crypts in the colon.
    [Show full text]
  • High Expression of the Sd Synthase B4GALNT2 Associates with Good
    cells Article High Expression of the Sda Synthase B4GALNT2 Associates with Good Prognosis and Attenuates Stemness in Colon Cancer Michela Pucci y, Inês Gomes Ferreira y, Martina Orlandani, Nadia Malagolini, Manuela Ferracin and Fabio Dall’Olio * Department of Experimental, Diagnostic and Specialty Medicine (DIMES), General Pathology Building, University of Bologna, Via San Giacomo 14, Via San Giacomo 14, 40126 Bologna, Italy; [email protected] (M.P.); [email protected] (I.G.F.); [email protected] (M.O.); [email protected] (N.M.); [email protected] (M.F.) * Correspondence: [email protected]; Tel.: +39-051-2094704 These authors have equal contribution. y Received: 25 February 2020; Accepted: 7 April 2020; Published: 11 April 2020 Abstract: Background: The carbohydrate antigen Sda and its biosynthetic enzyme B4GALNT2 are highly expressed in normal colonic mucosa but are down-regulated to a variable degree in colon cancer tissues. Here, we investigated the clinical and biological importance of B4GALNT2 in colon cancer. Methods: Correlations of B4GALNT2 mRNA with clinical data were obtained from The Cancer Genome Atlas (TCGA) database; the phenotypic and transcriptomic changes induced by B4GALNT2 were studied in LS174T cells transfected with B4GALNT2 cDNA. Results: TCGA data indicate that patients with high B4GALNT2 expression in cancer tissues display longer survival than non-expressers. In LS174T cells, expression of B4GALNT2 did not affect the ability to heal a scratch wound or to form colonies in standard growth conditions but markedly reduced the growth in soft agar, the tridimensional (3D) growth as spheroids, and the number of cancer stem cells, indicating a specific effect of B4GALNT2 on the growth in poor adherence and stemness.
    [Show full text]
  • Regenerating Proteins and Their Expression, Regulation, and Signaling
    BioMol Concepts, Vol. 3 (2012), pp. 57–70 • Copyright © by Walter de Gruyter • Berlin • Boston. DOI 10.1515/BMC.2011.055 Review Regenerating proteins and their expression, regulation, and signaling Abhirath Parikh 1 , Anne-Fleur Stephan 1 Introduction and Emmanuel S. Tzanakakis 1 – 3, * The fi rst regenerating (Reg) protein was identifi ed in pan- 1 Department of Chemical and Biological Engineering , creatic stones and was named pancreatic stone protein (PSP) State University of New York at Buffalo, 907 Furnas Hall, (1) . As later studies revealed, PSP could undergo cleavage Buffalo, NY 14260 , USA by trypsin resulting in its insoluble form named pancreatic 2 New York State Center of Excellence in Bioinformatics thread protein (PTP) and an 11-amino acid fragment (2, 3) . and Life Sciences , Buffalo, NY 14203 , USA PSP was also referred to as lithostathine due to its potential 3 Western New York Stem Cell Culture and Analysis role in inhibiting pancreatic stone formation (4, 5) . The pro- Center , State University of New York at Buffalo, Buffalo, tein was re-discovered independently in regenerating rat islets NY 14214 , USA after pancreatectomy (6) , and the term ‘ regenerating protein ’ * Corresponding author was coined, although it was reported subsequently that Reg e-mail: [email protected] (now known as Reg1), PSP, and lithostathine refer to the same gene product. In a similar manner, a related protein, the pancreatitis- Abstract associated protein (PAP) was independently found in acute pancreatitis samples (7) , rat pituitary gland (peptide 23) (8, 9) , The regenerating (Reg) protein family comprises C-type and in hepatocellular carcinomas (hepatic intestinal pancreatic lectin-like proteins discovered independently during pan- protein (HIP)) (10) .
    [Show full text]
  • Identification of Key Genes and Signaling Pathways Associated with the Progression of Gastric Cancer
    Pathology & Oncology Research (2020) 26:1903–1919 https://doi.org/10.1007/s12253-019-00781-3 ORIGINAL ARTICLE Identification of Key Genes and Signaling Pathways Associated with the Progression of Gastric Cancer Chaoran Yu1 & Jie Chen1,2 & Junjun Ma1 & Lu Zang1 & Feng Dong1 & Jing Sun1 & Minhua Zheng1 Received: 3 August 2019 /Accepted: 19 November 2019 /Published online: 17 December 2019 # Arányi Lajos Foundation 2019 Abstract Genomic features have been gradually regarded as part of the fundamentals to the clinical diagnosis and treatment for gastric cancer. However, the molecular alterations taking place during the progression of gastric cancer remain unclear. Therefore, identification of potential key genes and pathways in the gastric cancer progression is crucial to clinical practices. The gene expression profile, GSE103236, was retrieved for the identification of the differentially expressed genes (DEGs), followed by gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichments, gene set enrichment analysis (GSEA) and the protein-protein interaction (PPI) networks. Multiple bioinformatics plat- forms were employed for expression and prognostic analysis. Fresh frozen gastric cancer tissues were used for external validation. A total of 161 DEGs were identified from GSE103236. The PPI network-derived hub genes included collagen type I alpha 1 chain (COL1A1), tissue inhibitor of the metalloproteinases (TIMP1), Secreted Phosphoprotein 1(SPP1), somatostatin (SST), neuropeptide Y (NPY), biglycan (BGN), matrix metallopeptidase 3 (MMP3), apolipopro- tein E (APOE), ATPase H+/K+ transporting alpha subunit (ATP4A), lysyl oxidase (LOX). SPP1 (log rank p =0.0048, HR = 1.39 [1.1–1.75]) and MMP3 (log rank p < 0.0001, HR = 1.77 [1.44–2.19]) were significantly associated with poor overall survival.
    [Show full text]
  • An Inter-Species Translation Model Implicates Integrin Signaling in Infliximab-Resistant Colonic Crohn’S Disease
    bioRxiv preprint doi: https://doi.org/10.1101/776666; this version posted September 23, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Title: An Inter-Species Translation Model Implicates Integrin Signaling in Infliximab-Resistant Colonic Crohn’s Disease Authors: Douglas. K. Brubaker1, Manu. P. Kumar1, Paige, N. Vega2,3, Austin. N. Southard- Smith2,3, Alan. J. Simmons2,3, Elizabeth. A. Scoville4,5, Lori. A. Coburn4,5,6, Keith. T. Wilson4,5,6,7, Ken. S. Lau2,3,5, Douglas. A. Lauffenburger1 Affiliations: 1Department of Biological Engineering, Massachusetts Institute of Technology, MA 02139, USA. 2Epithelial Biology Center, Vanderbilt University School of Medicine, TN 37232, USA. 3Department of Cell and Developmental Biology, Vanderbilt University, TN 37232, USA. 4Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA. 5Center for Mucosal Inflammation and Cancer, Vanderbilt University Medical Center, Nashville, TN 37232, USA. 6Veterans Affairs Tennessee Valley Healthcare System, Nashville, TN 37212, USA. 7Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232, USA. *To whom correspondence should be addressed: [email protected] One Sentence Summary: Brubaker et al. implicate dysregulated collagen-binding integrin signaling in resistance to anti-TNF therapy in Crohn’s Disease by developing a mouse-proteomic to human-transcriptomic translation model and confirm the associated inter-cellular signaling network using single-cell RNA sequencing. bioRxiv preprint doi: https://doi.org/10.1101/776666; this version posted September 23, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder.
    [Show full text]
  • Gains of Chromosome 1P and 15Q Are Associated with Poor Survival After Cytoreductive Surgery and HIPEC for Treating Colorectal Peritoneal Metastases
    Ann Surg Oncol (2019) 26:4835–4842 https://doi.org/10.1245/s10434-019-07923-6 ORIGINAL ARTICLE – TRANSLATIONAL RESEARCH AND BIOMARKERS Gains of Chromosome 1p and 15q are Associated with Poor Survival After Cytoreductive Surgery and HIPEC for Treating Colorectal Peritoneal Metastases Malin Enblad, MD, PhD1 , Wilhelm Graf, MD, PhD1, Alexei Terman, MD, PhD2, Pascal Pucholt, PhD3, Bjo¨rn Viklund3, Anders Isaksson, PhD3, and Helgi Birgisson, MD, PhD1 1Department of Surgical Sciences, Colorectal Surgery, Uppsala University, Uppsala, Sweden; 2Department of Immunology, Genetics and Pathology, Experimental Pathology, Uppsala University, Uppsala, Sweden; 3Department of Medical Sciences, Science for Life Laboratory, Uppsala University, Uppsala, Sweden ABSTRACT Results. There were extensive but varying degrees of Purpose. Genetic alterations in colorectal peritoneal CNA, ranging from minimal CNA to total aneuploidy. In metastases (PM) are largely unknown. This study was particular, gain of parts of chromosome 1p and major parts designed to analyze whole-genome copy number alter- of 15q were associated with poor survival. A combination ations (CNA) in colorectal PM and to identify alterations of gains of 1p and 15q was associated with poor survival, associated with prognosis after cytoreductive surgery also after adjustment for differences in peritoneal cancer (CRS) and hyperthermic intraperitoneal chemotherapy index and completeness of cytoreduction score [hazard (HIPEC). ratio (HR) 5.96; 95% confidence interval (CI) 2.19–16.18]. Methods. All patients with PM, originating from a col- These patients had a mean copy number (CN) of 3.19 orectal adenocarcinoma, who were treated with CRS and compared with 2.24 in patients without gains. Complete HIPEC in Uppsala Sweden, between 2004 and 2015, were CN analysis was performed in 53 patients.
    [Show full text]