Extreme Phenotypic Variation Among Cryptic Caridean Shrimp from San Salvador Island, Bahamas

Total Page:16

File Type:pdf, Size:1020Kb

Extreme Phenotypic Variation Among Cryptic Caridean Shrimp from San Salvador Island, Bahamas EXTREME PHENOTYPIC VARIATION AMONG CRYPTIC CARIDEAN SHRIMP FROM SAN SALVADOR ISLAND, BAHAMAS. Robert E. Ditter1, Anna M. Goebel2 and Robert B. Erdman2 1Department of Marine and Ecological Sciences 2Department of Biological Sciences Florida Gulf Coast University Ft. Myers, FL 33965 ABSTRACT the dissolution of the underlying carbonate plat- form (Edwards, 1996; Mylroie and Carew, 2003). Extensive phenotypic variation is docu- No study has successfully traced the lakes’ connec- mented in specimens of cryptic cave shrimp col- tion to the surrounding ocean on San Sal. Our lected on San Salvador Island, Bahamas in June of original objective was to compare species compo- 2012. Sixty two of the 70 individuals exhibited sition of cryptic caridean shrimp inhabiting the such immense variation, including characters not conduit mouths of anchialine pools and use this previously described to Barbouria cubensis, Bar- information to infer connections between lakes and bouria yanezi, Parhippolyte sterreri, or any mem- the surrounding ocean. ber of the family Barbouriidae, that identification using a traditional morphological approach proved impossible. Examples of such characters include terminal eyestalk spines, gross spination of the tel- son and the presence of sensory dorsal organs on the carapace. The source and extent of morpholog- ical variation in these shrimp remains unclear, but may be due to environmental or genetic causes, or a combination of both. We note that rampant vari- ation is observed in taxonomically important char- acters that were previously considered highly con- served and therefore were used to discriminate among species of shrimp. If these characters are highly variable then the taxonomic identity of shrimp in this group may need to be reconsidered. INTRODUCTION A common feature among many tropical islands in the Caribbean is the presence of seem- ingly disjointed tidal lakes and ponds. San Salva- dor (San Sal) is a small island in the Bahamian ar- chipelago and nearly half of its land mass is cov- Figure 1. Map of San Salvador Island labeled with ered by anchialine pools that range from brackish sites sampled in 2012; (1) Shrimp Holes, (2) Oys- to hypersaline in nature (Mylroie and Carew, ter Pond, (3) Wild Dilly Pond, (4) Fortune Hill 2003). Subsurface tidal flows permit marine con- Plantation Pond, (5) Mermaid Pond, (6) Watlings ditions to exist in many of the landlocked pools via Blue Hole and (7) Blue Hole #5 (a.k.a. Double seawater exchange through conduits created from Decker Blue Hole). 1 The 15th Symposium on the Natural History of the Bahamas It is not unusual for multiple species of hibited by specimens collected from anchialine cryptic carideans to be found inhabiting the same pools on San Sal. lake on other Caribbean islands (Wicksten, 1996; De Grave et al., 2009). Because these shrimp have METHODS planktonic larvae, inhabit conduits with tidal flow, and occur in multiple lakes, these shrimp are excel- Specimen Collection lent candidates to examine possible interconnectiv- ity among lakes (Manning and Hart, 1984; Boho- During June 2012, 70 shrimp were collect- nak, 1999). ed from seven anchialine ponds and blue holes on In order to infer connections using anchi- San Sal (Figure 1). Samples were collected with aline shrimp, the species composition of shrimp on hand nets or by baited minnow traps. Shrimp were the island must first be identified. Only one spe- transported to the Gerace Research Center (GRC) cies (Barbouria cubensis) has been previously rec- and maintained in running seawater until preserva- orded from San Sal (Hobbs, 1978). During 2011, tion. All specimens were preserved in 95-100% another species (Parhippolyte sterreri) was col- ETOH and transported to Florida Gulf Coast Uni- lected from Mermaid Pond (Ditter and Erdman, versity (FGCU). personal observations). Both, P. sterreri and B. cubensis are listed as critically endangered on the Morphological Identification IUCN Red List (Iliffe, 1996). A second species of Barbouria (B. yanezi) that is thought to be synon- We examined 13 morphological characters ymous with B. cubensis (De Grave, Bauer and (Figure 2) commonly used to discriminate between Felder, personal communication with Ditter) was members of the family Barbouriidae (Chace and described from Cozumel, Mexico in 2008 (Mejía et Manning, 1972; Hobbs, 1978; Hart and Manning, al., 2008) and is thought to occur only on the Yu- 1981; Manning and Hart, 1984; Wicksten, 1996; catan Peninsula. Meíja et al., 2008) using a Leica compound dis- Typically, decapods can be identified based secting microscope equipped with a Lumenera IN- on morphology. We assumed we would be able to FINITYx camera. INFINITY Analysis software identify species using morphology and would re- was used to capture images and take measurements quire DNA to identify only unusual cases. How- of morphological characters. Morphological char- ever, we found such extensive phenotypic variation acters that would require dissection were not ex- among specimens, species level identifications amined to prevent damage to specimens (e.g. max- based on traditional methods proved impossible. illipeds or the appendix masculina). Therefore, the objective of this study became doc- umenting the extreme morphological variation ex- Figure 2. Morphological characters examined: (1) cornea width relative to eyestalk width; (2) rostrum length relative to antennular peduncle, (3) number of pre- and post-orbital dorsal and (4) ventral spines on rostrum; (5) terminal shape of telson, (6) number of dorsal and (7) terminal telson spines; (8) scaphocerite length to width ratio; (9) carapace spines, (10) carapace texture and sensory dorsal organs; (11) shape and (12) spines of plerua of the 4th & 5th pleomere; (13) 1st & 2nd pereiopods chelate. 2 0 2 2 (1) 0 0 (0) 1 1 (0) Range malformed spines absent chelae present both unarmed or unassignable shape 4th & 5th low angle 2.7x 2.7x as long as wide anterior presentSDO terminal spine present MinimumObserved cornea greatly reduced, smooth with only single not reaching past eyestalk antennal & branchiostegal antennal rd 8 15 15 (7) 13 13 (3) 13 13 (8) Range present segment both armed chelae present extra antennal & Table 1. Common morphological characters used to discriminate among Barbouriidae4th & 5th rounded spp. separated by expected features for 3.5x 3.5x as long as wide branchiostegal spine reaching 3 dorsal organs present terminal spine present (1 (1 wider & 1 narrower) B. cubensis and P. sterreriMaximumObserved , and the range of observed variation. Numbering in Character column corresponds to Figure 2 Legend. not smooth with 4 sensory cornea width assymertrical nd The The 15 4-5 6 6 (3) 4 4 (2) pointed 3-4 (1-2) 3-4 Typical Typical mentioned chelae present spines present t h 3x as long as wide antennal segment Symposium on the Natural History of the Bahamas the on of Symposium the History Natural barely reaching 2 4th & 5th acute angle cornea wider than stalk 4th unarmed 5th armed Parhippolyte sterreri Parhippolyte carapace smooth, no SDO antennal & branchiostegal 3 1-7 6 6 (3) 4 4 (2) 5-6 (3-4) 5-6 Typical Typical rounded mentioned chelae present spines present antennal segment nd 2.9x 2.9x as long as wide 2 4th & 5th acute angle Barbouria cubensis Barbouria 4th unarmed 5th armed does not extend beyond carapace smooth, no SDO antennal & branchiostegal cornea narrower than stalk Characters used to discriminate between Barbouriidae species discriminatebetween Barbouriidae to used Characters Characters common between members of the familyBarbouriidae the betweenmembers of common Characters spines chelate 5th 5th pleura 5th 5th pleura Characters telson(pairs) eyestalk width presense of SDO on telsonon (pairs) antennal peduncle antennal (8) (8) length vs. width spines (postorbital) (10) only (10) &antennal (9) carapace texture, (9) carapace and (13) 1st and 2nd periopods 1st(13) 2nd and (12) armorment(12) of 4th and (1) cornea width reative(1) cornea to (6) (6) number of dorsal spines (5) (5) terminal shape of telson (3) (3) number of dorsal rostrum (2) (2) rostrum length relative to (11) relative(11) shape of 4th and branchiostegal spinesbranchiostegal present (7) (7) number of distal spines on (4) (4) number of ventral rostrum Pereiopods Pleura Carapace Scaphocerite Telson Rostrum Eyes Structure The The 15 t h Symposium on the Natural History of the Bahamas the on of Symposium the History Natural 4 Figure 3. Expected phenotypes for B. cubensis and P. sterreri compared to examples of observed abnormal phenotypes; Top Row: spines on rostrum and rostrum length, Middle Row: number and pairing of dorsal spines on telson, Bottom Row: number of terminal spines and terminal shape of telson. The 15th Symposium on the Natural History of the Bahamas RESULTS Eyes Based on 13 morphological characters Just over 34% of specimens had eyes that (Table 1), only six shrimp were identified as Bar- varied from the description of the eyes of B. cu- bouria cubensis and two were identified as bensis. All specimens had some form of pigment- Parhippolyte sterreri. The species identity of the ed eyes. The cornea width of most individuals was remaining 62 shrimp could not be positively iden- typically narrower than the eyestalk, but 24 indi- tified based on morphological characters due to viduals had cornea that were equal to or larger immense phenotypic variation (Figure 3). The than the width of the eyestalk, had malformed variation exhibited by these shrimp often fell out- cornea, were asymmetrical in width or the cornea side of characters prescribed to either genus (Bar- was greatly reduced and a single terminal spine bouria or Parhippolyte). Extreme variation was was present on the eyestalk (Figure 4). common among all lakes with no discernable dis- tribution pattern. Figure 4. Example of asymmetry in right and left cornea and eyestalk morphology; a) right lateral cor- nea severely reduced and eyestalk with terminal spine present (indicated by arrows), b) dorsal view of eyes, c) left lateral cornea narrower than eyestalk width, eyestalk spine absent.
Recommended publications
  • A Classification of Living and Fossil Genera of Decapod Crustaceans
    RAFFLES BULLETIN OF ZOOLOGY 2009 Supplement No. 21: 1–109 Date of Publication: 15 Sep.2009 © National University of Singapore A CLASSIFICATION OF LIVING AND FOSSIL GENERA OF DECAPOD CRUSTACEANS Sammy De Grave1, N. Dean Pentcheff 2, Shane T. Ahyong3, Tin-Yam Chan4, Keith A. Crandall5, Peter C. Dworschak6, Darryl L. Felder7, Rodney M. Feldmann8, Charles H. J. M. Fransen9, Laura Y. D. Goulding1, Rafael Lemaitre10, Martyn E. Y. Low11, Joel W. Martin2, Peter K. L. Ng11, Carrie E. Schweitzer12, S. H. Tan11, Dale Tshudy13, Regina Wetzer2 1Oxford University Museum of Natural History, Parks Road, Oxford, OX1 3PW, United Kingdom [email protected] [email protected] 2Natural History Museum of Los Angeles County, 900 Exposition Blvd., Los Angeles, CA 90007 United States of America [email protected] [email protected] [email protected] 3Marine Biodiversity and Biosecurity, NIWA, Private Bag 14901, Kilbirnie Wellington, New Zealand [email protected] 4Institute of Marine Biology, National Taiwan Ocean University, Keelung 20224, Taiwan, Republic of China [email protected] 5Department of Biology and Monte L. Bean Life Science Museum, Brigham Young University, Provo, UT 84602 United States of America [email protected] 6Dritte Zoologische Abteilung, Naturhistorisches Museum, Wien, Austria [email protected] 7Department of Biology, University of Louisiana, Lafayette, LA 70504 United States of America [email protected] 8Department of Geology, Kent State University, Kent, OH 44242 United States of America [email protected] 9Nationaal Natuurhistorisch Museum, P. O. Box 9517, 2300 RA Leiden, The Netherlands [email protected] 10Invertebrate Zoology, Smithsonian Institution, National Museum of Natural History, 10th and Constitution Avenue, Washington, DC 20560 United States of America [email protected] 11Department of Biological Sciences, National University of Singapore, Science Drive 4, Singapore 117543 [email protected] [email protected] [email protected] 12Department of Geology, Kent State University Stark Campus, 6000 Frank Ave.
    [Show full text]
  • Biodiversity: the UK Overseas Territories. Peterborough, Joint Nature Conservation Committee
    Biodiversity: the UK Overseas Territories Compiled by S. Oldfield Edited by D. Procter and L.V. Fleming ISBN: 1 86107 502 2 © Copyright Joint Nature Conservation Committee 1999 Illustrations and layout by Barry Larking Cover design Tracey Weeks Printed by CLE Citation. Procter, D., & Fleming, L.V., eds. 1999. Biodiversity: the UK Overseas Territories. Peterborough, Joint Nature Conservation Committee. Disclaimer: reference to legislation and convention texts in this document are correct to the best of our knowledge but must not be taken to infer definitive legal obligation. Cover photographs Front cover: Top right: Southern rockhopper penguin Eudyptes chrysocome chrysocome (Richard White/JNCC). The world’s largest concentrations of southern rockhopper penguin are found on the Falkland Islands. Centre left: Down Rope, Pitcairn Island, South Pacific (Deborah Procter/JNCC). The introduced rat population of Pitcairn Island has successfully been eradicated in a programme funded by the UK Government. Centre right: Male Anegada rock iguana Cyclura pinguis (Glen Gerber/FFI). The Anegada rock iguana has been the subject of a successful breeding and re-introduction programme funded by FCO and FFI in collaboration with the National Parks Trust of the British Virgin Islands. Back cover: Black-browed albatross Diomedea melanophris (Richard White/JNCC). Of the global breeding population of black-browed albatross, 80 % is found on the Falkland Islands and 10% on South Georgia. Background image on front and back cover: Shoal of fish (Charles Sheppard/Warwick
    [Show full text]
  • Bulletin of the Museum of Comparative Zoology AT
    Bulletin of the Museum of Comparative Zoology AT HARVARD COLLEGE. VOL. LIV. NO. 15. SOME CUBAN CRUSTACEA. BY MARY J. RATHBUN. WITH NOTES ON THE ASTACIDAE, BY WALTER FAXON, AND A LIST OF ISOPODA, BY HARRIET RICHARDSON. WITH.FIVE PLATES. CAMBRIDGE, MASS., U. S. A.: PRINTED FOR THE MUSEUM. OCTOBER, 1912. mmm^mwEWfiflKT**^ REPORTS ON THE SCIENTIFIC RESULTS OF THE EXPEDITION TO THE EAST­ ERN TROPICAL-PACIFIC, IN CHARGE OF ALEXANDER AGASSIZ, BY THE >,U. S. FISH COMMISSION STEAMER "ALBATROSS," FROM OCTOBER, 1904, TO MARCH, 1905, LIEUTENANT COMMANDER L/M. GARRETT, U. S. N.,' *$^ COMMANDING, PUBLISHED OR IN PREPARATION:— - * • C. A. KOFOID and E. J. RIGDEN. A. AGASSIZ. V.6 General Report on 2 XXIV. * The Protozoa: the Expedition. 1 P. KRUMBACH. The Sagittae. A. AGASSIZ. I. Three Letters to Geo. R. VON LENDENFELD. XXI." The M. Bowers, IT. S. Fish Com. - A. AGASSIZ.and H. L. CLARK.' The Siliceous Sponges. H. LUDWIG. The Holothurians. Echini. H. LUDWIG. The Starfishes. H. B. BIGELOW. XVI.is The Medusae. H. B. BIGELOW. XXIII.*3 The Sipho-^ H. LUDWIG. The Ophiurans. G. W. MULLER. Tne Ostracods. nophores. H.B. BIGELOW. XXVI.« TheCteno- JPHN MURRAY and • G. V. LEE i«Pi * XVII.17 The Bottom Specimens. phores. i MARYJ.RATHBUN. X.10 T-he Crus­ R. P. BIGELOW. The Stomatopods.* | tacea Decapod,a. O. CARLGREN. "The Actinaria. | HARRIET RICHARDSON. II.» The S. F/CLARKE. VIIl.s The Hydroids." ' Isopods. , W. R. COE. The Nemerteans. W. E. RITTER. IV.« The Tunicates. 1 L. J. COLE. XIX. * The Pycnogonida. ALICE ROBERTSON. The Bryozoa, W. H. DALL.
    [Show full text]
  • A Morphological and Molecular Study of Diversity and Connectivity Among Anchialine Shrimp
    Florida International University FIU Digital Commons FIU Electronic Theses and Dissertations University Graduate School 11-10-2020 Connections in the Underworld: A Morphological and Molecular Study of Diversity and Connectivity among Anchialine Shrimp. Robert Eugene Ditter Florida International University, [email protected] Follow this and additional works at: https://digitalcommons.fiu.edu/etd Part of the Biodiversity Commons, Bioinformatics Commons, Biology Commons, Ecology and Evolutionary Biology Commons, Genetics and Genomics Commons, Marine Biology Commons, Natural Resources and Conservation Commons, Oceanography Commons, Other Environmental Sciences Commons, Speleology Commons, and the Zoology Commons Recommended Citation Ditter, Robert Eugene, "Connections in the Underworld: A Morphological and Molecular Study of Diversity and Connectivity among Anchialine Shrimp." (2020). FIU Electronic Theses and Dissertations. 4561. https://digitalcommons.fiu.edu/etd/4561 This work is brought to you for free and open access by the University Graduate School at FIU Digital Commons. It has been accepted for inclusion in FIU Electronic Theses and Dissertations by an authorized administrator of FIU Digital Commons. For more information, please contact [email protected]. FLORIDA INTERNATIONAL UNIVERSITY Miami, Florida CONNECTIONS IN THE UNDERWORLD: A MORPHOLOGICAL AND MOLECULAR STUDY OF DIVERSITY AND CONNECTIVITY AMONG ANCHIALINE SHRIMP A dissertation submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in BIOLOGY by Robert E. Ditter 2020 To: Dean Michael R. Heithaus College of Arts, Sciences and Education This dissertation, written by Robert E. Ditter, and entitled Connections in the Underworld: A Morphological and Molecular Study of Diversity and Connectivity among Anchialine Shrimp, having been approved in respect to style and intellectual content, is referred to you for judgment.
    [Show full text]
  • Disturbance in the Anchialine Ecosystem: Ramifications for Ecology and Physiology
    Disturbance in the anchialine ecosystem: ramifications for ecology and physiology by Justin Chase Havird A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama May 3, 2014 Keywords: ecophysiology, invasive species, crustacean, osmoregulation, gene expression Copyright 2014 by Justin Chase Havird Approved by Scott R Santos, Chair, Associate Professor of Biological Sciences Raymond P. Henry, Professor of Biological Sciences Mark R. Liles, Associate Professor of Biological Sciences Alan E. Wilson, Associate Professor of Biological Sciences/Fisheries, Aquaculture, and Aquatic Sciences Abstract Habitats in the anchialine ecosystem are defined as coastal ponds, pools, and caves that lack surface connections to the open ocean, but possess both seawater and freshwater influences due to subterranean connections to the ocean and groundwater. Such habitats are rare worldwide, but are concentrated in the Hawaiian Islands. Organisms that live in these habitats must cope with changing salinities, variable oxygen regimes, high levels of UV radiation, and anthropogenic effects such as pollution and invasive species. Accordingly, such organisms represent an opportunity to shed light on environmental physiology and invasive species biology. However, few studies have investigated physiology or response to invasive species in anchialine organisms. Accordingly, the objective of this dissertation is to examine the effect of natural and anthropogenic disturbances on the physiology and ecology of anchialine organisms. Chapter 1 provides an introduction to the anchialine ecosystem and outlines the specific aims of the dissertation. Chapter 2 presents a series of field and laboratory based experiments investigating how endemic Hawaiian anchialine organisms have responded to invasive fishes.
    [Show full text]
  • Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources
    Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources http://www.dnr.sc.gov/marine/sertc/ Southeastern Regional Taxonomic Center Invertebrate Literature Library (updated 9 May 2012, 4056 entries) (1958-1959). Proceedings of the salt marsh conference held at the Marine Institute of the University of Georgia, Apollo Island, Georgia March 25-28, 1958. Salt Marsh Conference, The Marine Institute, University of Georgia, Sapelo Island, Georgia, Marine Institute of the University of Georgia. (1975). Phylum Arthropoda: Crustacea, Amphipoda: Caprellidea. Light's Manual: Intertidal Invertebrates of the Central California Coast. R. I. Smith and J. T. Carlton, University of California Press. (1975). Phylum Arthropoda: Crustacea, Amphipoda: Gammaridea. Light's Manual: Intertidal Invertebrates of the Central California Coast. R. I. Smith and J. T. Carlton, University of California Press. (1981). Stomatopods. FAO species identification sheets for fishery purposes. Eastern Central Atlantic; fishing areas 34,47 (in part).Canada Funds-in Trust. Ottawa, Department of Fisheries and Oceans Canada, by arrangement with the Food and Agriculture Organization of the United Nations, vols. 1-7. W. Fischer, G. Bianchi and W. B. Scott. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. Volume II. Final report to the Minerals Management Service. J. M. Uebelacker and P. G. Johnson. Mobile, AL, Barry A. Vittor & Associates, Inc. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. Volume III. Final report to the Minerals Management Service. J. M. Uebelacker and P. G. Johnson. Mobile, AL, Barry A. Vittor & Associates, Inc. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico.
    [Show full text]
  • Confirmation of the Presence of Janicea Antiguensis (Chace, 1972)
    Nauplius 20(2): 171-178, 2012 171 Confirmation of the presence ofJanicea antiguensis (Chace, 1972) (Decapoda: Barbouriidae) in northeastern and eastern Brazil Bruno W. Giraldes, Petrônio A. Coelho Filho, Petrônio A. Coelho† and Arthur Anker (BWG) (PAC) Laboratório de Carcinologia, Departamento de Oceanografia, Museu Oceanográfico da Universidade Federal de Pernambuco (MOUFPE). Avenida Arquitetura, s/n, Cidade Universitária, 50670-901, Recife, Pernambuco, Brazil. † in memoriam. E-mail: [email protected] (PACF) Departamento de Engenharia de Pesca, Universidade Federal de Alagoas. Avenida Divaldo Suruagy, s/n, Centro, 57200-000, Penedo, Alagoas, Brazil. E-mail: [email protected] (AA) Laboratório de Zoobentos, Instituto de Ciências do Mar (Labomar), Universidade Federal do Ceará. Avenida da Abolição, 3207, Meireles, 60165-081, Fortaleza, Ceará, Brazil. E-mail: [email protected] Abstract The barbouriid shrimp Janicea antiguesis (Chace, 1972) is reported from Porto de Galinhas and Tamandaré in Pernambuco and Guarapari in Espírito Santo, Brazil. These records confirm the presence ofJ. antiguensis in northeastern and eastern Brazil, considerably extending its Brazilian range from Fernando de Noronha to southern Espírito Santo and also representing the first record of this species from mainland coastal reefs. In Brazil, J. antiguensis occurs in or near marine reef caves, typically at depths between 5 and 15 m, and can be most easily observed while scuba diving at night. Colour photographs of J. antiguensis from various Atlantic localities are provided and its colour pattern is compared to that of the closely related Indo-West Pacific barbouriid shrimp,Parhippolyte misticia (Clark, 1989). Some in situ observations are provided for the Porto de Galinhas population of J.
    [Show full text]
  • Anchialine Cave Biology in the Era of Speleogenomics Jorge L
    International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats.
    [Show full text]
  • An Enumeration of the Crustacea Decapoda Natantia Inhabiting Subterranean Waters
    / s £ Qtaam m !957 CTttSW^ AN ENUMERATION OF THE CRUSTACEA DECAPODA NATANTIA INHABITING SUBTERRANEAN WATERS par L.-B. HOLTHUIS Rijksmuseum van Natuurlijke Historie, Leiden, Holland The present paper provides a list of the macrurous Decapod Crustacea, belonging to the supersection Natantia, that have been found in subterranean waters. The number of such species is quite small, being somewhat more than 40 in all. Of these only part are actual troglobic forms, i.e. animals that are only known from caves and have not, or only incidentally, been found in waters that are exposed to daylight. A second group is formed by species that normally live in surface waters and only occasionally are met with in subterranean habitats. No sharp line can be drawn between these two categories, the more so as at present still extremely little is known of the biology and of the ecology of most of the species. Nevertheless it was thought useful to try and make in the present paper a distinction between these two groups, of each of which a separate list is given enumerating the species in systematic order. In the first list the true troglobic forms are dealt with, the second contains those species which must be ranged under the incidental visitors of subterranean waters. Of the species placed in list I a complete synonymy is given, while also all the localities whence the species has been reported are enumerated. Furthermore remarks are made on the ecology and biology of the animals as far as these are known. In the second list only those references are cited that deal with specimens found in subterranean waters, while also some notes on the ecology of the animals and the general distribution of the species are provided.
    [Show full text]
  • RNA Profile Diversity Across Arthropoda: Guidelines, Methodological Artifacts, and Expected Outcomes Danielle M
    Biology Methods and Protocols, 2018, 1–10 doi: 10.1093/biomethods/bpy012 Methods Manuscript METHODS MANUSCRIPT RNA profile diversity across arthropoda: guidelines, methodological artifacts, and expected outcomes Danielle M. DeLeo *, Jorge L. Pe´rez-Moreno, Herna´nVa´zquez-Miranda and Heather D. Bracken-Grissom Department of Biological Sciences, Florida International University-Biscayne Bay Campus, North Miami, FL, USA *Correspondence address. Florida International University – Biscayne Bay Campus, 3000 NE 151st, North Miami, FL 33181, USA. Tel: (305) 919-4109; Fax: (305) 919-4030; E-mail: ddeleo@fiu.edu Abstract High-quality RNA is an important precursor for high-throughput RNA sequencing (RNAseq) and subsequent analyses. However, the primary metric used to assess RNA quality, the RNA Integrity Number (RIN), was developed based on model bacterial and vertebrate organisms. Though the phenomenon is not widely recognized, invertebrate 28S ribosomal RNA (rRNA) is highly prone to a form of denaturation known as gap deletion, in which the subunit collapses into two smaller fragments. In many nonmodel invertebrates, this collapse of the 28S subunit appears as a single band similar in size to the 18S rRNA subunit. This phenomenon is hypothesized to be commonplace among arthropods and is often misinterpreted as a “degraded” rRNA profile. The limited characterization of gap deletion in arthropods, a highly diverse group, as well as other nonmodel invertebrates, often biases RNA quality assessments. To test whether the collapse of 28S is a general pat- tern or a methodological artifact, we sampled more than half of the major lineages within Arthropoda. We found that the 28S collapse is present in 90% of the species sampled.
    [Show full text]
  • Reference List 1. Amphipacifica, Journal of Aquatic
    Reference List 1. Amphipacifica, Journal of Aquatic Systematic Biology. Ottawa, Ontario: Amphipacifica Research Publications. Vol. 1, 1994. 2. Amphipacifica, Journal of Aquatic Systematic Biology. Ottawa, Ontario: Amphipacifica Research Publications. Vol. 1, 1994. 3. Amphipacifica, Journal of Aquatic Systematic Biology. Ottawa, Ontario: Amphipacifica Research Publications. Vol. 1, 1994. 4. Amphipacifica, Journal of Aquatic Systematic Biology. Ottawa, Ontario: Amphipacifica Research Publications. Vol. 1, 1994. 5. Amphipacifica, Journal of Aquatic Systematic Biology. Ottawa, Ontario: Amphipacifica Research Publications. Vol. 1, 1994. 6. Amphipacifica, Journal of Aquatic Systematic Biology. Ottawa, Ontario: Amphipacifica Research Publications. Vol. 1, 1994. 7. Amphipacifica, Journal of Aquatic Systematic Biology. Ottawa, Ontario: Amphipacifica Research Publications. Vol. 2, 1995. 8. Amphipacifica, Journal of Aquatic Systematic Biology. Ottawa, Ontario: Amphipacifica Research Publications. Vol. 1, 1995. 9. Amphipacifica, Journal of Aquatic Systematic Biology. Ottawa, Ontario: Amphipacifica Research Publications. Vol. 2, 1995. 10. Amphipacifica, Journal of Aquatic Systematic Biology. Ottawa, Ontario: Amphipacifica Research Publications. Vol. 1, 1995. 11. Amphipacifica, Journal of Aquatic Systematic Biology. Ottawa, Ontario: Amphipacifica Research Publications. Vol. 2, 1996. 12. Amphipacifica, Journal of Aquatic Systematic Biology. Ottawa, Ontario: Amphipacifica Research Publications. Vol. 2, 1996. 13. Amphipacifica, Journal of Aquatic Systematic
    [Show full text]
  • Ditter Goebel Erdman
    PROCEEDINGS OF THE FIFTEENTH SYMPOSIUM ON THE NATURAL HISTORY OF THE BAHAMAS Edited by Robert Erdman and Randall Morrison Conference Organizer Thomas Rothfus Gerace Research Centre San Salvador Bahamas 2016 Cover photograph - "Pederson Cleaning Shrimp" courtesy of Bob McNulty Press: A & A Printing © Copyright 2016 by Gerace Research Centre. All rights Reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electric or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in written form. ISBN 978-0-935909-16-6 The 15th Symposium on the Natural History of the Bahamas EXTREME PHENOTYPIC VARIATION AMONG CRYPTIC CARIDEAN SHRIMP FROM SAN SALVADOR ISLAND, BAHAMAS. Robert E. Ditter1, Anna M. Goebel2 and Robert B. Erdman2 1Department of Marine and Ecological Sciences 2Department of Biological Sciences Florida Gulf Coast University Ft. Myers, FL 33965 ABSTRACT the dissolution of the underlying carbonate plat- form (Edwards, 1996; Mylroie and Carew, 1995). Extensive phenotypic variation is docu- No study has successfully traced the lakes’ connec- mented in specimens of cryptic cave shrimp col- tion to the surrounding ocean on San Sal. Our lected on San Salvador Island, Bahamas in June of original objective was to compare species compo- 2012. Sixty two of the 70 individuals exhibited sition of cryptic caridean shrimp inhabiting the such immense variation, including characters not conduit mouths of anchialine pools and use this previously described to Barbouria cubensis, Bar- information to infer connections between lakes and bouria yanezi, Parhippolyte sterreri, or any mem- the surrounding ocean. ber of the family Barbouriidae, that identification using a traditional morphological approach proved impossible.
    [Show full text]