Safety Assessment of Tripeptide-1, Hexapeptide-12, and Related Amides As Used in Cosmetics
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Effect of Soybean Oligopeptide on the Growth and Metabolism Of
RSC Advances View Article Online PAPER View Journal | View Issue Effect of soybean oligopeptide on the growth and metabolism of Lactobacillus acidophilus JCM 1132 Cite this: RSC Adv., 2020, 10,16737 Wenhui Li, Yinxiao Zhang, He Li, * Chi Zhang, Jian Zhang, Jalal Uddin and Xinqi Liu* Soybean protein (Pro) and soybean oligopeptide (Pep) were subjected to simulated digestion in vitro to study the effect of Pep on the growth and metabolism of Lactobacillus acidophilus JCM 1132. First, the molecular weight distribution differences of samples before and after digestion were compared, and the samples were used to replace the nitrogen source components in the culture media. Then, the viable cell numbers, lactic acid and acetic acid content, differential metabolites, and metabolic pathways during the culturing process were measured. Results showed that the digested soybean oligopeptide (dPep) was less efficient than MRS medium in promoting the growth, but by increasing the content of the intermediates during the tricarboxylic acid (TCA) cycle, its metabolic capacity was significantly improved. Received 20th February 2020 Besides, due to the low molecular weight of dPep, it can be better transported and utilized. And dPep Creative Commons Attribution 3.0 Unported Licence. Accepted 20th April 2020 significantly strengthened the amino acid metabolism and weakened the glycerol phospholipid DOI: 10.1039/d0ra01632b metabolism, so the ability of dPep in promoting the growth and metabolism of Lactobacillus acidophilus rsc.li/rsc-advances JCM 1132 is higher than the digested soybean protein (dPro). 1. Introduction represent those that reach the intestine and directly acts on the intestinal ora aer digestion by the human body.13,14 Although Pro is a high-quality, nutritionally balanced plant Probiotics are mainly composed of Lactobacillus and Bido- protein displaying an excellent amino acid composition, it has bacterium. -
Plant Protease Inhibitors: a Defense Strategy in Plants
Biotechnology and Molecular Biology Review Vol. 2 (3), pp. 068-085, August 2007 Available online at http://www.academicjournals.org/BMBR ISSN 1538-2273 © 2007 Academic Journals Standard Review Plant protease inhibitors: a defense strategy in plants Huma Habib and Khalid Majid Fazili* Department of Biotechnology, The University of Kashmir, P/O Naseembagh, Hazratbal, Srinagar -190006, Jammu and Kashmir, India. Accepted 7 July, 2007 Proteases, though essentially indispensable to the maintenance and survival of their host organisms, can be potentially damaging when overexpressed or present in higher concentrations, and their activities need to be correctly regulated. An important means of regulation involves modulation of their activities through interaction with substances, mostly proteins, called protease inhibitors. Some insects and many of the phytopathogenic microorganisms secrete extracellular enzymes and, in particular, enzymes causing proteolytic digestion of proteins, which play important roles in pathogenesis. Plants, however, have also developed mechanisms to fight these pathogenic organisms. One important line of defense that plants have to fight these pathogens is through various inhibitors that act against these proteolytic enzymes. These inhibitors are thus active in endogenous as well as exogenous defense systems. Protease inhibitors active against different mechanistic classes of proteases have been classified into different families on the basis of significant sequence similarities and structural relationships. Specific protease inhibitors are currently being overexpressed in certain transgenic plants to protect them against invaders. The current knowledge about plant protease inhibitors, their structure and their role in plant defense is briefly reviewed. Key words: Proteases, enzymes, protease inhibitors, serpins, cystatins, pathogens, defense. Table of content 1. -
Terminology of Bioanalytical Methods (IUPAC Recommendations 2018) Received November 21, 2016; Accepted February 1, 2018
Pure Appl. Chem. 2018; 90(7): 1121–1198 IUPAC Recommendations Ján Labuda, Richard P. Bowater, Miroslav Fojta, Günter Gauglitz, Zdeněk Glatz, Ivan Hapala, Jan Havliš, Ferenc Kilar, Aniko Kilar, Lenka Malinovská, Heli M. M. Sirén, Petr Skládal, Federico Torta, Martin Valachovič, Michaela Wimmerová, Zbyněk Zdráhal and David Brynn Hibbert* Terminology of bioanalytical methods (IUPAC Recommendations 2018) https://doi.org/10.1515/pac-2016-1120 Received November 21, 2016; accepted February 1, 2018 Abstract: Recommendations are given concerning the terminology of methods of bioanalytical chemistry. With respect to dynamic development particularly in the analysis and investigation of biomacromolecules, terms related to bioanalytical samples, enzymatic methods, immunoanalytical methods, methods used in genomics and nucleic acid analysis, proteomics, metabolomics, glycomics, lipidomics, and biomolecules interaction studies are introduced. Keywords: bioanalytical samples; biomolecule interaction studies; enzymatic methods; genomics; glycom- ics; immunoanalytical methods; lipidomics; metabolomics; nucleic acid analysis; proteomics. CONTENTS 1. PREFACE �������������������������������������������������������������������������������������������������������������������������������������� 1122 2. INTRODUCTION ��������������������������������������������������������������������������������������������������������������������������� 1122 3. BIOANALYTICAL SAMPLES ���������������������������������������������������������������������������������������������������������� -
Applications of Oligopeptide-Functionalized
APPLICATIONS OF OLIGOPEPTIDE-FUNCTIONALIZED SURFACES AND MICROPARTICLES IN LIQUID CRYSTALS- BASED ASSAYS ONG LIAN HAO (B.ENG. (HONS.), NANYANG TECHNOLOGICAL UNIVERSITY) A THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DEPARTMENT OF CHEMICAL AND BIOMOLECULAR ENGINEERING NATIONAL UNIVERSITY OF SINGAPORE 2016 DECLARATION I hereby declare that this thesis is my original work and it has been written by me in its entirety. I have duly acknowledged all the sources of information which have been used in the thesis. This thesis has also not been submitted for any degree in any university previously. Ong Lian Hao 10 September 2016 i ACKNOWLEDGEMENTS First of all, I am utmost grateful for the opportunity presented by my advisor, Dr. Yang Kun-Lin, to complete this thesis under his guidance. His insightful perspectives and open-door policy provided a conducive environment for me to develop and hone my research skills and ideologies. I am also thankful for the engaging, and more importantly enlightening discussions with our group members, and they include Dr. Liu Fengli, Dr. Chen Chih-Hsin, Dr. Ding Xiaokang, Ms. Liu Yanyang, Ms. Nguyen Le Truc and Dr. Arumugam Kamayan Rajagopalan G. I am also fortunate to receive guidance and advice from Dr. Saif Khan and his group members during our regular intergroup sharing sessions. I would also like to thank the friendly laboratory staff for their assistance in the procurement and operation of equipment, and they include Mr. Boey Kok Hong, Ms. Lee Chai Keng, Mr. Liu Zhicheng, Ms. Lim Kwee Mei, Dr. Yuan Ze Liang and Dr. Yang Liming. Finally, I am grateful to my parents and parents-in-law for their support. -
Synthesis of Equimolar Multiple Oligomer Mixtures
Europaisches Patentamt (19) European Patent Office Office europeenpeen des brevets EP 0 558 671 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) intci.6: C07K1/04, C07K7/06, of the grant of the patent: A61 K 38/00, G01 N 33/53 27.01.1999 Bulletin 1999/04 (86) International application number: (21) Application number: 92902209.3 PCT/US91/08694 Date of 20.11.1991 (22) filing: (87) International publication number: WO 92/09300 (11.06.1992 Gazette 1992/13) (54) SYNTHESIS OF EQUIMOLAR MULTIPLE OLIGOMER MIXTURES, ESPECIALLY OF OLIGOPEPTIDE MIXTURES SYNTHESE AQUIMOLARER MISCHUNGEN VIELZAHLIGER OLIGOMERE, SPEZIELL OLIGOPEPTIDMISCHUNGEN SYNTHESE DE MELANGES OLIGOMERES MULTIPLES EQUIMOLAIRES, NOTAMMENT DE MELANGES D'OLIGOPEPTIDES (84) Designated Contracting States: (56) References cited: AT BE CH DE DK ES FR GB GR IT LI LU NL SE US-A- 4 631 211 US-A-5 010 175 (30) Priority: 21.11.1990 US 617023 BANBURY REP. vol. 29, 1988, pages 151-161 16.05.1991 US 701658 HOUGHTEN, R.A. 'Exact amino acid involvement 19.11.1991 US 797551 in the interactions of peptide antigens with monoclonal antibodies' (43) Date of publication of application: PROTIDES BIOL. FLUIDS vol. 34, 1986, pages 19 08.09.1993 Bulletin 1993/36 - 22 HOUGHTEN, R.A. 'Facile determination of exact amino acid involvement in peptide (73) Proprietor: ITEREX PHARMACEUTICALS LTD. antigen/monoclonal antibody interactions' PARTNERSHIP J. IMMUNOL, vol. 144, no. 3, 1 February 1990, San Diego, C A 92121 (US) pages 976 - 983 APPEL J.R. ET AL. 'Elucidation of discontinuous linear determinants in (72) Inventors: peptides' • HOUGHTEN, Richard, A. -
Amide Bond Formation in Nonribosomal Peptide Synthesis
Amide Bond Formation in Nonribosomal Peptide Synthesis: The Formylation and Condensation Domains Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) dem Fachbereich Chemie der Philipps-Universität Marburg vorgelegt von Georg Schönafinger aus München Marburg/Lahn 2007 Vom Fachbereich Chemie der Philipps-Universität Marburg als Dissertation am _______________ angenommen. Erstgutachter : Prof. Dr. M. A. Marahiel (Philipps-Universität, Marburg) Zweitgutachter : Prof. Dr. L.-O. Essen (Philipps-Universität, Marburg) Tag der Disputation: 20. Dezember 2007 2 The majority of the work presented here has been published: Samel, S.A.†, Schoenafinger, G. †, Knappe, T.A., Marahiel, M.A., Essen, L.O. 2007. Structural and functional insights into a peptide bond-forming bidomain from a nonribosomal peptide synthetase. Structure 15(7): 781-92. † equal contribution Schoenafinger, G., Schracke, N., Linne, U., Marahiel, M.A. 2006. Formylation domain: an essential modifying enzyme for the nonribosomal biosynthesis of linear gramicidin. J Am Chem Soc. 128(23): 7406-7. Schoenafinger, G., Marahiel, M.A. accepted 2007. Nonribosomal Peptides. Wiley Encyclopaedia of Chemical Biology. In press. 3 To Anke 4 Summary Nonribosomal peptides are of outstanding pharmacological interest, since many representatives of this highly diverse class of natural products exhibit therapeutically important activities, such as antibacterial, antitumor and immunosuppressive properties. Understanding their biosynthesis performed by multimodular mega-enzymes, the nonribosomal peptide synthetases (NRPSs), is one of the key determinants in order to be able to reprogram these machineries for the production of novel therapeutics. The central structural motif of all peptides is the peptide (or amide) bond. In this work, two different amide bond forming catalytic entities from NRPSs were studied: The condensation (C) and formylation (F) domains. -
A Simplified Reconstitution of Mrna-Directed Peptide Synthesis: Activity of the Epsilon Enhancer and an Unnatural Amino Acid1
Analytical Biochemistry 297, 60–70 (2001) doi:10.1006/abio.2001.5329, available online at http://www.idealibrary.com on A Simplified Reconstitution of mRNA-Directed Peptide Synthesis: Activity of the Epsilon Enhancer and an Unnatural Amino Acid1 Anthony C. Forster,*,2 Herbert Weissbach,† and Stephen C. Blacklow*,2 *Department of Pathology, Brigham and Women’s Hospital and Harvard Medical School, 75 Francis Street, Boston, Massachusetts 02115; and †Center for Molecular Biology and Biotechnology, Florida Atlantic University, 777 Glades Road, Boca Raton, Florida 33431 Received March 13, 2001; published online August 30, 2001 Key Words: translation; reconstitution; E. coli; ribo- The study of the early events in translation would some; initiation factor; elongation factor; tRNA; en- be greatly facilitated by reconstitution with easily hancer; epsilon; peptide; unnatural amino acid; biotin. purified components. Here, Escherichia coli oli- gopeptide synthesis has been reconstituted using five purified recombinant His-tagged E. coli initia- tion and elongation factors. Highly purified ribo- The initiation of translation is a major control point somes are required to yield products with strong in gene expression and is the target of a number of dependencies on the translation factors. Based on cytotoxic agents (1). Initiation is less well understood HPLC separation of radiolabeled translation prod- than elongation and termination in eubacteria (2–4), ucts from an mRNA encoding a tetrapeptide, approx- and initiation is much more complex in eukaryotes (5). imately 80% of peptide products are full length, and It therefore seems likely that the study of the simpler the remaining 20% are the dipeptide and tripeptide eubacterial initiation process may be helpful both in products resulting from pausing or premature ter- the elucidation of general mechanistic principles em- mination. -
A Global Review on Short Peptides: Frontiers and Perspectives †
molecules Review A Global Review on Short Peptides: Frontiers and Perspectives † Vasso Apostolopoulos 1 , Joanna Bojarska 2,* , Tsun-Thai Chai 3 , Sherif Elnagdy 4 , Krzysztof Kaczmarek 5 , John Matsoukas 1,6,7, Roger New 8,9, Keykavous Parang 10 , Octavio Paredes Lopez 11 , Hamideh Parhiz 12, Conrad O. Perera 13, Monica Pickholz 14,15, Milan Remko 16, Michele Saviano 17, Mariusz Skwarczynski 18, Yefeng Tang 19, Wojciech M. Wolf 2,*, Taku Yoshiya 20 , Janusz Zabrocki 5, Piotr Zielenkiewicz 21,22 , Maha AlKhazindar 4 , Vanessa Barriga 1, Konstantinos Kelaidonis 6, Elham Mousavinezhad Sarasia 9 and Istvan Toth 18,23,24 1 Institute for Health and Sport, Victoria University, Melbourne, VIC 3030, Australia; [email protected] (V.A.); [email protected] (J.M.); [email protected] (V.B.) 2 Institute of General and Ecological Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego˙ 116, 90-924 Lodz, Poland 3 Department of Chemical Science, Faculty of Science, Universiti Tunku Abdul Rahman, Kampar 31900, Malaysia; [email protected] 4 Botany and Microbiology Department, Faculty of Science, Cairo University, Gamaa St., Giza 12613, Egypt; [email protected] (S.E.); [email protected] (M.A.) 5 Institute of Organic Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego˙ 116, 90-924 Lodz, Poland; [email protected] (K.K.); [email protected] (J.Z.) 6 NewDrug, Patras Science Park, 26500 Patras, Greece; [email protected] 7 Department of Physiology and Pharmacology, -
Evidence for Two Different Modes of Tripeptide Disappearance in Human Intestine. Uptake by Peptide Carrier Systems and Hydrolysis by Peptide Hydrolases
Evidence for two different modes of tripeptide disappearance in human intestine. Uptake by peptide carrier systems and hydrolysis by peptide hydrolases. S A Adibi, … , S S Masilamani, P M Amin J Clin Invest. 1975;56(6):1355-1363. https://doi.org/10.1172/JCI108215. Research Article The intestinal fate of two tripeptides (triglycine and trileucine), which differ markedly in solubility and molecular weight, have been investigated by jejunal perfusion in healthy human volunteers. Rates of glycine or leucine uptake from test solutions containing triglycine or trileucine were greater than from test solutions containing corresponding amounts of free glycine or free leucine, respectively. The rate of glycine uptake from a 100 mM triglycine solution was greater than that from a 150 mM diglycine solution. At each infused load of triglycine (e.g., 1,000 mumol/min) the rates (micromoles/minutes per 30 cm) of either triglycine disappearance (810 +/- 40) or glycine absorption (2,208 +/- 122) were markedly greater than the luminal accumulation rates of either diglycine (56 +/- 10) or free glycine (110 +/- 18). The luminal accumulation rate of free leucine during infusion of a 5 mM trileucine solution was over threefold greater than that of free glycine during the infusion of a 5 mM triglycine solution. Luminal fluid exhibited no hydrolytic activity against triglycine, but contained some activity against trileucine. Saturation of free amino acid carrier system with a large load of leucine did not affect glycine absorption rate from a triglycine test solution, but isoleucine markedly inhibited the uptake from a trileucine solution. When the carrier system for dipeptides was saturated with a large amount of glycylleucine, […] Find the latest version: https://jci.me/108215/pdf Evidence for Two Different Modes of Tripeptide Disappearance in Human Intestine UPTAKE BY PEPTIDE CARRIER SYSTEMS AND HYDROLYSIS BY PEPTIDE HYDROLASES SIAMAK A. -
Diversity of Peptides Produced by Nodularia Spumigena from Various Geographical Regions
Mar. Drugs 2013, 11, 1-19; doi:10.3390/md11010001 OPEN ACCESS Marine Drugs ISSN 1660-3397 www.mdpi.com/journal/marinedrugs Article Diversity of Peptides Produced by Nodularia spumigena from Various Geographical Regions Hanna Mazur-Marzec 1,*, Monika J. Kaczkowska 1, Agata Blaszczyk 1, Reyhan Akcaalan 2, Lisa Spoof 3 and Jussi Meriluoto 3 1 Department of Marine Biology and Ecology, University of Gdansk, Al. Marszałka Piłsudskiego 46, Gdynia 81-378, Poland; E-Mails: [email protected] (M.J.K.); [email protected] (A.B.) 2 Faculty of Fisheries, Istanbul University, Ordu Cad. No. 200, 34470 Laleli, Istanbul, Turkey; E-Mail: [email protected] 3 Department of Biosciences, Abo Akademi University, Tykistök atu 6A, Turku 20520, Finland; E-Mails: [email protected] (L.S.); [email protected] (J.M.) * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +48-58-523-6621; Fax: +48-58-523-6712. Received: 12 October 2012; in revised form: 13 November 2012 / Accepted: 11 December 2012 / Published: 21 December 2012 Abstract: Cyanobacteria produce a great variety of non-ribosomal peptides. Among these compounds, both acute toxins and potential drug candidates have been reported. The profile of the peptides, as a stable and specific feature of an individual strain, can be used to discriminate cyanobacteria at sub-population levels. In our work, liquid chromatography-tandem mass spectrometry was used to elucidate the structures of non-ribosomal peptides produced by Nodularia spumigena from the Baltic Sea, the coastal waters of southern Australia and Lake Iznik in Turkey. -
New Biodegradable Peptide-Based Polymer Constructs
New Biodegradable Peptide-based Polymer Constructs Maarten van Dijk New Biodegradable Peptide-based Polymer Constructs Maarten van Dijk PhD thesis with summary in Dutch Department of Medicinal Chemistry and Chemical Biology and Department of Pharmaceutics, Utrecht University, Utrecht, The Netherlands October 2009 ISBN: 978-90-393-5165-9 © 2009 by Maarten van Dijk. All rights reserved. No part of this thesis may be reproduced or transmitted in any form or by any means, without written permission from the author. New Biodegradable Peptide-based Polymer Constructs Nieuwe biodegradeerbare polymeerconstructen gebaseerd op peptiden (met een samenvatting in het Nederlands) Proefschrift ter verkrijging van de graad van doctor aan de Universiteit Utrecht op gezag van de rector magnificus, prof.dr. J.C. Stoof, ingevolge het besluit van het college voor promoties in het openbaar te verdedigen op maandag 5 oktober 2009 des middags te 4.15 uur door Maarten van Dijk geboren op 3 maart 1980 te Rotterdam Promotoren: Prof. dr. R.M.J. Liskamp Prof. dr. ir. W.E. Hennink Co-promotoren: Dr. ir. D.T.S. Rijkers Dr. C.F. van Nostrum Contents Chapter 1 General Introduction 7 Chapter 2 Synthesis and Applications of Biomedical and 19 Pharmaceutical Polymers via Click Chemistry Methodologies Chapter 3 Synthesis of Peptide-based Polymers by 51 Microwave-assisted Cycloaddition Backbone Polymerization Chapter 4 Synthesis and Characterization of Biodegradable 73 Peptide-based Polymers Prepared by Microwave- assisted Click Chemistry Chapter 5 Synthesis and Characterization -
TRH-Like Peptides
Physiol. Res. 60: 207-215, 2011 https://doi.org/10.33549/physiolres.932075 REVIEW TRH-Like Peptides R. BÍLEK1, M. BIČÍKOVÁ1, L. ŠAFAŘÍK2 1Institute of Endocrinology, Prague, Czech Republic, 2Urology Clinic, Beroun, Czech Republic Received September 6, 2010 Accepted October 8, 2010 On-line November 29, 2010 Summary of the leaders working in the area concerning the TRH TRH-like peptides are characterized by substitution of basic research was Professor V. Schreiber from Prague, Czech amino acid histidine (related to authentic TRH) with neutral or Republic, which already in 1959 formulated the acidic amino acid, like glutamic acid, phenylalanine, glutamine, hypothesis that adenohypophyseal acid phosphatase is tyrosine, leucin, valin, aspartic acid and asparagine. The related to thyrotropin secretion and that TRH is its presence of extrahypothalamic TRH-like peptides was reported in possible activator (Schreiber and Kmentova 1959, peripheral tissues including gastrointestinal tract, placenta, neural Schreiber et al. 1962). TRH precursor, human prepro- tissues, male reproductive system and certain endocrine tissues. TRH, consists of 242 amino acid residues, and contains Work deals with the biological function of TRH-like peptides in six separate copies of the TRH progenitor sequence different parts of organisms where various mechanisms may (Satoh and Mori 1994), which determine the primary serve for realisation of biological function of TRH-like peptides as structure of TRH as a tripeptide pyroglutamyl-histidinyl- negative feedback to the pituitary exerted by the TRH-like proline amide. The transcriptional unit of prepro-TRH is peptides, the role of pEEPam such as fertilization-promoting localized on chromosome 3 in humans (three exons peptide, the mechanism influencing the proliferative ability of interrupted by two introns) (Yamada et al.