Para Humus Systems and Forms
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ORGANIC GEOCHEMISTRY: CHALLENGES for the 21St CENTURY
ORGANIC GEOCHEMISTRY: CHALLENGES FOR THE 21st CENTURY VOL. 2 Book of Abstracts of the Communications presented to the 22nd International Meeting on Organic Geochemistry Seville – Spain. September 12 -16, 2005 Editors: F.J. González-Vila, J.A. González-Pérez and G. Almendros Equipo de trabajo: Rocío González Vázquez Antonio Terán Rodíguez José Mª de la Rosa Arranz Maquetación: Rocío González Vázquez Fotomecánica e impresión: Akron Gráfica, Sevilla © 22nd IMOG, Sevilla 2005 Depósito legal: SE-61181-2005 I.S.B.N.: 84-689-3661-8 COMMITTEES INVOLVED IN THE ORGANIZATION OF THE 22 IMOG 2005 Chairman: Francisco J. GONZÁLEZ-VILA Vice-Chairman: José A. GONZÁLEZ-PÉREZ Consejo Superior de Investigaciones Científicas (CSIC) Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS) Scientific Committee Francisco J. GONZÁLEZ-VILA (Chairman) IRNAS-CSIC, Spain Gonzalo ALMENDROS Claude LARGEAU CCMA-CSIC, Spain ENSC, France Pim van BERGEN José C. del RÍO SHELL Global Solutions, The Netherlands IRNAS-CSIC, Spain Jørgen A. BOJESEN-KOEFOED Jürgen RULLKÖTTER GEUS, Denmark ICBM, Germany Chris CORNFORD Stefan SCHOUTEN IGI, UK NIOZ, The Netherlands Gary ISAKSEN Eugenio VAZ dos SANTOS NETO EXXONMOBIL, USA PETROBRAS RD, Brazil Local Committee José Ramón de ANDRÉS IGME, Spain Mª Carmen DORRONSORO Mª Enriqueta ARIAS Universidad del País Vasco Universidad de Alcalá Antonio GUERRERO Tomasz BOSKI Universidad de Sevilla Universidad do Algarve, Faro, Portugal Juan LLAMAS Ignacio BRISSON ETSI Minas de Madrid Repsol YPF Albert PERMANYER Juan COTA Universidad de Barcelona Universidad de Sevilla EAOG Board Richard L. PATIENCE (Chairman) Sylvie DERENNE (Secretary) Ger W. van GRAAS (Treasurer) Walter MICHAELIS (Awards) Francisco J. GONZALEZ-VILA (Newsletter) C. -
Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-Rich, Geothermal Spring 2 3 Lewis M
bioRxiv preprint doi: https://doi.org/10.1101/428698; this version posted September 27, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-rich, Geothermal Spring 2 3 Lewis M. Ward1,2,3*, Airi Idei4, Mayuko Nakagawa2,5, Yuichiro Ueno2,5,6, Woodward W. 4 Fischer3, Shawn E. McGlynn2* 5 6 1. Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA 02138 USA 7 2. Earth-Life Science Institute, Tokyo Institute of Technology, Meguro, Tokyo, 152-8550, Japan 8 3. Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 9 91125 USA 10 4. Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, 11 Japan 12 5. Department of Earth and Planetary Sciences, Tokyo Institute of Technology, Meguro, Tokyo, 13 152-8551, Japan 14 6. Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth 15 Science and Technology, Natsushima-cho, Yokosuka 237-0061, Japan 16 Correspondence: [email protected] or [email protected] 17 18 Abstract 19 Hydrothermal systems, including terrestrial hot springs, contain diverse and systematic 20 arrays of geochemical conditions that vary over short spatial scales due to progressive interaction 21 between the reducing hydrothermal fluids, the oxygenated atmosphere, and in some cases 22 seawater. At Jinata Onsen, on Shikinejima Island, Japan, an intertidal, anoxic, iron- and 23 hydrogen-rich hot spring mixes with the oxygenated atmosphere and sulfate-rich seawater over 24 short spatial scales, creating an enormous range of redox environments over a distance ~10 m. -
Humus-Producing Materials and the Making and Use of Compost
174 August, 1926 No seed of the Carolina clover is available commercially; but where it is abundant, seedheads can readily be gathered and scattered where wanted. Seed of the low hop clover is not to be had in quan- tity, but that of the least hop clover can be bought in England under the name suckling clover or Trifolium minus. It can also be had from certain seed dealers in Oregon, who clean it out of alsike clover seed; but the Oregon seed is usually quite foul with weed seeds and there is at present no information as to how these weeds will behave in the East. Seeding of all of these clovers should be done in early fall or late summer. Much of the seed of the Carolina clover is hard, so that if a quick stand is wanted a rather heavy seeding must be made. No experiments have been made with these plants, but in view of the small size of the seed it seems as though five pounds per acre of the hop clovers and eight pounds of Carolina clover should be enough. To insure even distribution it is well to mix the seed with sifted loam or sand. Humus-Producing Materials and the Making and Use of Compost By R. A. Oakley and H. L. 'Vest oyer Organic matter, or humus, as a constituent of soil, bears a very important relation to the growth of plants. This is a fact that was discovered by man early in his agricultural efforts. Just as he had a knowledge of the plants that were worth his while to grow, it is reasonable to suppose he early learned the difference between poor and productive soils, and what common substances he could add to them to increase their productivity. -
Dynamics of Carbon 14 in Soils: a Review C
Radioprotection, Suppl. 1, vol. 40 (2005) S465-S470 © EDP Sciences, 2005 DOI: 10.1051/radiopro:2005s1-068 Dynamics of Carbon 14 in soils: A review C. Tamponnet Institute of Radioprotection and Nuclear Safety, DEI/SECRE, CADARACHE, BP. 1, 13108 Saint-Paul-lez-Durance Cedex, France, e-mail: [email protected] Abstract. In terrestrial ecosystems, soil is the main interface between atmosphere, hydrosphere, lithosphere and biosphere. Its interactions with carbon cycle are primordial. Information about carbon 14 dynamics in soils is quite dispersed and an up-to-date status is therefore presented in this paper. Carbon 14 dynamics in soils are governed by physical processes (soil structure, soil aggregation, soil erosion) chemical processes (sequestration by soil components either mineral or organic), and soil biological processes (soil microbes, soil fauna, soil biochemistry). The relative importance of such processes varied remarkably among the various biomes (tropical forest, temperate forest, boreal forest, tropical savannah, temperate pastures, deserts, tundra, marshlands, agro ecosystems) encountered in the terrestrial ecosphere. Moreover, application for a simplified modelling of carbon 14 dynamics in soils is proposed. 1. INTRODUCTION The importance of carbon 14 of anthropic origin in the environment has been quite early a matter of concern for the authorities [1]. When the behaviour of carbon 14 in the environment is to be modelled, it is an absolute necessity to understand the biogeochemical cycles of carbon. One can distinguish indeed, a global cycle of carbon from different local cycles. As far as the biosphere is concerned, pedosphere is considered as a primordial exchange zone. Pedosphere, which will be named from now on as soils, is mainly located at the interface between atmosphere and lithosphere. -
The Nature and Dynamics of Soil Organic Matter: Plant Inputs, Microbial Transformations, and Organic Matter Stabilization
Soil Biology & Biochemistry 98 (2016) 109e126 Contents lists available at ScienceDirect Soil Biology & Biochemistry journal homepage: www.elsevier.com/locate/soilbio Review paper The nature and dynamics of soil organic matter: Plant inputs, microbial transformations, and organic matter stabilization Eldor A. Paul Natural Resource Ecology Laboratory and Department of Soil and Crop Sciences, Colorado State University, Fort Collins, CO 80523-1499, USA article info abstract Article history: This review covers historical perspectives, the role of plant inputs, and the nature and dynamics of soil Received 19 November 2015 organic matter (SOM), often known as humus. Information on turnover of organic matter components, Received in revised form the role of microbial products, and modeling of SOM, and tracer research should help us to anticipate 31 March 2016 what future research may answer today's challenges. Our globe's most important natural resource is best Accepted 1 April 2016 studied relative to its chemistry, dynamics, matrix interactions, and microbial transformations. Humus has similar, worldwide characteristics, but varies with abiotic controls, soil type, vegetation inputs and composition, and the soil biota. It contains carbohydrates, proteins, lipids, phenol-aromatics, protein- Keywords: Soil organic matter derived and cyclic nitrogenous compounds, and some still unknown compounds. Protection of trans- 13C formed plant residues and microbial products occurs through spatial inaccessibility-resource availability, 14C aggregation of mineral and organic constituents, and interactions with sesquioxides, cations, silts, and Plant residue decomposition clays. Tracers that became available in the mid-20th century made the study of SOM dynamics possible. Soil carbon dynamics Carbon dating identified resistant, often mineral-associated, materials to be thousands of years old, 13 Humus especially at depth in the profile. -
Nicole Kube Phd
Leibniz-Institut für Meereswissenschaften The integration of microalgae photobioreactors in a recirculation system for low water discharge mariculture Dissertation zur Erlangung des Doktorgrades der Mathematisch-Naturwissenschaftlichen Fakultät an der Christian-Albrechts-Universität zu Kiel vorgelegt von Nicole Kube Kiel, 2006 Referentin: Prof. Dr. Karin Lochte Koreferent: Prof. Dr. Dr. h.c. Harald Rosenthal Tag der mündlichen Prüfung: Zum Druck genehmigt: Kiel, den Der Dekan Foreword The manuscripts included in this thesis are prepared for submission to peer- reviewed journals as listed below: Wecker B., Kube N., Bischoff A.A., Waller U. (2006). MARE – Marine Artificial Recirculated Ecosystem: feasibility and modelling of a novel integrated recirculation system. (manuscript) Kube N., Bischoff A.A., Wecker B., Waller U. Cultivation of microalgae using a continuous photobioreactor system based on dissolved nutrients of a recirculation system for low water discharge mariculture (manuscript) Kube N. And Rosenthal H. Ozonation and foam fractionation used for the removal of bacteria and parti- cles in a marine recirculation system for microalgae cultivation (manuscript) Kube N., Bischoff A.A., Blümel M., Wecker B., Waller U. MARE – Marine Artificial Recirulated Ecosystem II: Influence on the nitrogen cycle in a marine recirculation system with low water discharge by cultivat- ing detritivorous organisms and phototrophic microalgae. (manuscript) This thesis has been realised with the help of several collegues. The contributions in particular -
Supplementary Material 16S Rrna Clone Library
Kip et al. Biogeosciences (bg-2011-334) Supplementary Material 16S rRNA clone library To investigate the total bacterial community a clone library based on the 16S rRNA gene was performed of the pool Sphagnum mosses from Andorra peat, next to S. magellanicum some S. falcatulum was present in this pool and both these species were analysed. Both 16S clone libraries showed the presence of Alphaproteobacteria (17%), Verrucomicrobia (13%) and Gammaproteobacteria (2%) and since the distribution of bacterial genera among the two species was comparable an average was made. In total a 180 clones were sequenced and analyzed for the phylogenetic trees see Fig. A1 and A2 The 16S clone libraries showed a very diverse set of bacteria to be present inside or on Sphagnum mosses. Compared to other studies the microbial community in Sphagnum peat soils (Dedysh et al., 2006; Kulichevskaya et al., 2007a; Opelt and Berg, 2004) is comparable to the microbial community found here, inside and attached on the Sphagnum mosses of the Patagonian peatlands. Most of the clones showed sequence similarity to isolates or environmental samples originating from peat ecosystems, of which most of them originate from Siberian acidic peat bogs. This indicated that similar bacterial communities can be found in peatlands in the Northern and Southern hemisphere implying there is no big geographical difference in microbial diversity in peat bogs. Four out of five classes of Proteobacteria were present in the 16S rRNA clone library; Alfa-, Beta-, Gamma and Deltaproteobacteria. 42 % of the clones belonging to the Alphaproteobacteria showed a 96-97% to Acidophaera rubrifaciens, a member of the Rhodospirullales an acidophilic bacteriochlorophyll-producing bacterium isolated from acidic hotsprings and mine drainage (Hiraishi et al., 2000). -
Glossary and Acronyms Glossary Glossary
Glossary andChapter Acronyms 1 ©Kevin Fleming ©Kevin Horseshoe crab eggs Glossary and Acronyms Glossary Glossary 40% Migratory Bird “If a refuge, or portion thereof, has been designated, acquired, reserved, or set Hunting Rule: apart as an inviolate sanctuary, we may only allow hunting of migratory game birds on no more than 40 percent of that refuge, or portion, at any one time unless we find that taking of any such species in more than 40 percent of such area would be beneficial to the species (16 U.S.C. 668dd(d)(1)(A), National Wildlife Refuge System Administration Act; 16 U.S.C. 703-712, Migratory Bird Treaty Act; and 16 U.S.C. 715a-715r, Migratory Bird Conservation Act). Abiotic: Not biotic; often referring to the nonliving components of the ecosystem such as water, rocks, and mineral soil. Access: Reasonable availability of and opportunity to participate in quality wildlife- dependent recreation. Accessibility: The state or quality of being easily approached or entered, particularly as it relates to complying with the Americans with Disabilities Act. Accessible facilities: Structures accessible for most people with disabilities without assistance; facilities that meet Uniform Federal Accessibility Standards; Americans with Disabilities Act-accessible. [E.g., parking lots, trails, pathways, ramps, picnic and camping areas, restrooms, boating facilities (docks, piers, gangways), fishing facilities, playgrounds, amphitheaters, exhibits, audiovisual programs, and wayside sites.] Acetylcholinesterase: An enzyme that breaks down the neurotransmitter acetycholine to choline and acetate. Acetylcholinesterase is secreted by nerve cells at synapses and by muscle cells at neuromuscular junctions. Organophosphorus insecticides act as anti- acetyl cholinesterases by inhibiting the action of cholinesterase thereby causing neurological damage in organisms. -
Nutrient Control Design Manual: State of Technology Review Report,” Were
United States Office of Research and EPA/600/R‐09/012 Environmental Protection Development January 2009 Agency Washington, DC 20460 Nutrient Control Design Manual State of Technology Review Report EPA/600/R‐09/012 January 2009 Nutrient Control Design Manual State of Technology Review Report by The Cadmus Group, Inc 57 Water Street Watertown, MA 02472 Scientific, Technical, Research, Engineering, and Modeling Support (STREAMS) Task Order 68 Contract No. EP‐C‐05‐058 George T. Moore, Task Order Manager United States Environmental Protection Agency Office of Research and Development / National Risk Management Research Laboratory 26 West Martin Luther King Drive, Mail Code 445 Cincinnati, Ohio, 45268 Notice This document was prepared by The Cadmus Group, Inc. (Cadmus) under EPA Contract No. EP‐C‐ 05‐058, Task Order 68. The Cadmus Team was lead by Patricia Hertzler and Laura Dufresne with Senior Advisors Clifford Randall, Emeritus Professor of Civil and Environmental Engineering at Virginia Tech and Director of the Occoquan Watershed Monitoring Program; James Barnard, Global Practice and Technology Leader at Black & Veatch; David Stensel, Professor of Civil and Environmental Engineering at the University of Washington; and Jeanette Brown, Executive Director of the Stamford Water Pollution Control Authority and Adjunct Professor of Environmental Engineering at Manhattan College. Disclaimer The views expressed in this document are those of the individual authors and do not necessarily, reflect the views and policies of the U.S. Environmental Protection Agency (EPA). Mention of trade names or commercial products does not constitute endorsement or recommendation for use. This document has been reviewed in accordance with EPA’s peer and administrative review policies and approved for publication. -
Humus) from a Consideration of the Chemical and Biochemical Processes of Humification
Evaluation of Conceptual Models of Natural Organic Matter (Humus) From a Consideration of the Chemical and Biochemical Processes of Humification By Robert L. Wershaw Scientific Investigations Report 2004-5121 U.S. Department of the Interior U.S. Geological Survey U.S. Department of the Interior Gale A. Norton, Secretary U.S. Geological Survey Charles G. Groat, Director U.S. Geological Survey, Reston, Virginia: 2004 For sale by U.S. Geological Survey, Information Services Box 25286, Denver Federal Center Denver, CO 80225 For more information about the USGS and its products: Telephone: 1-888-ASK-USGS World Wide Web: http://www.usgs.gov/ Any use of trade, product, or firm names in this publication is for descriptive purposes only and does not imply endorsement by the U.S. Government. iii Contents Abstract.......................................................................................................................................................... 1 Introduction ................................................................................................................................................... 1 Purpose and scope.............................................................................................................................. 2 Degradation reactions of plant tissue ............................................................................................. 2 Degradation pathways of plant tissue components ............................................................................... 3 Enzymatic reactions -
Metagenomic Analysis Reveals Rapid Development of Soil Biota on Fresh Volcanic Ash Hokyung Song1, Dorsaf Kerfahi2, Koichi Takahashi3, Sophie L
www.nature.com/scientificreports OPEN Metagenomic analysis reveals rapid development of soil biota on fresh volcanic ash Hokyung Song1, Dorsaf Kerfahi2, Koichi Takahashi3, Sophie L. Nixon1, Binu M. Tripathi4, Hyoki Kim5, Ryunosuke Tateno6* & Jonathan Adams7* Little is known of the earliest stages of soil biota development of volcanic ash, and how rapidly it can proceed. We investigated the potential for soil biota development during the frst 3 years, using outdoor mesocosms of sterile, freshly fallen volcanic ash from the Sakurajima volcano, Japan. Mesocosms were positioned in a range of climates across Japan and compared over 3 years, against the developed soils of surrounding natural ecosystems. DNA was extracted from mesocosms and community composition assessed using 16S rRNA gene sequences. Metagenome sequences were obtained using shotgun metagenome sequencing. While at 12 months there was insufcient DNA for sequencing, by 24 months and 36 months, the ash-soil metagenomes already showed a similar diversity of functional genes to the developed soils, with a similar range of functions. In a surprising contrast with our hypotheses, we found that the developing ash-soil community already showed a similar gene function diversity, phylum diversity and overall relative abundances of kingdoms of life when compared to developed forest soils. The ash mesocosms also did not show any increased relative abundance of genes associated with autotrophy (rbc, coxL), nor increased relative abundance of genes that are associated with acquisition of nutrients from abiotic sources (nifH). Although gene identities and taxonomic afnities in the developing ash-soils are to some extent distinct from the natural vegetation soils, it is surprising that so many of the key components of a soil community develop already by the 24-month stage. -
Humus Content and Quality of Compost Materials
TechLink Research Summary #3309 Humus Content and Quality of Compost Materials Humus is the stable organic fraction of soil, compost, or any growing media. Humus is the term used for a collection of complex organic compounds that have been decomposed and synthesized by microorganisms to a stable level - or are resistant to further decay or decomposition (Brady and Weil, 1996). Humus is generally dark brown in color, colloidal in nature, and mostly organic carbon - as most nutrients have been mineralized and subsequently made available to plants by microbial decomposition. The benefit of this humus fraction is its ability to increase the physical structure and stability of the soil, to hold nutrients and make them available to plants, to hold water (5 times its weight) and to make it available for plants, and to adsorb pollutants in the soil and water matrix (Brady and Weil, 1996). Composting is often referred to as an accelerated humification process. Approximately 15 to 35% of the carbon originally used to make compost ends up as humus and approximately 60 to 80% of the stable organic matter content in compost or soil is in the form of a humic substance. Humic substances are made of humins + humic acids + fulvic acids, while the remaining non-humic fraction, 20 to 40%, is still considered humus and of great benefit to nutrient availability for plants and to aggregate stability (which increases water infiltration, percolation and holding capacity; increases soil biology and reduces soil erosion) of soil particles. Humic substances can be extremely stable with a half life ranging from decades to centuries (Brady and Weil, 1996).