Published OnlineFirst May 23, 2014; DOI: 10.1158/0008-5472.CAN-13-3398
Cancer Therapeutics, Targets, and Chemical Biology Research
Mechanisms Promoting Escape from Mitotic Stress–Induced Tumor Cell Death
Rebecca Sinnott1, Leah Winters3, Brittany Larson2, Daniela Mytsa1, Patrick Taus1, Kathryn M. Cappell4, and Angelique W. Whitehurst1
Abstract Non–small cell lung cancer (NSCLC) is notorious for its paltry responses to first-line therapeutic regimens. In contrast to acquired chemoresistance, little is known about the molecular underpinnings of the intrinsic resistance of chemo-na€ ve NSCLC. Here we report that intrinsic resistance to paclitaxel in NSCLC occurs at a cell-autonomous level because of the uncoupling of mitotic defects from apoptosis. To identify components that permit escape from mitotic stress–induced death, we used a genome-wide RNAi-based strategy, which combines a high-throughput toxicity screen with a live-cell imaging platform to measure mitotic fate. This strategy revealed that prolonging mitotic arrest with a small molecule inhibitor of the APC/cyclosome could sensitize otherwise paclitaxel-resistant NSCLC. We also defined novel roles for CASC1 and TRIM69 in supporting resistance to spindle poisons. CASC1, which is frequently co-amplified with KRAS in lung tumors, is essential for microtubule polymerization and satisfaction of the spindle assembly checkpoint. TRIM69, which associates with spindle poles and promotes centrosomal clustering, is essential for formation of a bipolar spindle. Notably, RNAi-mediated attenuation of CASC1 or TRIM69 was sufficient to inhibit tumor growth in vivo. On the basis of our results, we hypothesize that tumor evolution selects for a permissive mitotic checkpoint, which may promote survival despite chromosome segregation errors. Attacking this adaptation may restore the apoptotic consequences of mitotic damage to permit the therapeutic eradication of drug-resistant cancer cells. Cancer Res; 74(14); 3857–69. 2014 AACR.
Introduction identification of mechanisms supporting intrinsic resistance Paclitaxel is a first-line chemotherapeutic agent that to paclitaxel in NSCLC is essential. Our goal here was to inhibits the dynamic instability of microtubules, thus pre- identify the cell autonomous components that permit – venting bi-orientation of chromosomes during mitosis (1). escape from mitotic stress induced cell death in a paclitax- Although the reduction of breast and ovarian tumor burden el-resistant NSCLC setting. fi following taxane-based therapies demonstrates efficacy in Ef cacy of paclitaxel and other antimitotic agents hinges these settings, responses in non–smallcelllungcancer on the coupling of mitotic defects to cell death. By inhibiting (NSCLC) are rarely curative, as only 30% of patients exhibit the dynamic instability of microtubules, paclitaxel disrupts a partial response at best, indicating a widespread intrinsic chromosome alignment, thereby preventing satisfaction of resistance to antimitotic agents (2, 3). Thus, given the the spindle assembly checkpoint (SAC). The SAC is com- promise, yet limitation, of current antimitotic therapies, the posed of sentinel proteins, including MAD2 and BUBR1, which, in the absence of proper microtubule-kinetochore attachments, inhibit the activity of the anaphase promoting complex/cyclosome (APC/C; refs. 4 and 5). Nearly all tumor Authors' Affiliations: 1Department of Pharmacology and Lineberger Com- cells are sensitive to paclitaxel-induced mitotic defects and prehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill; 2Wake Forest University School of Medicine, Winston-Salem, engage the SAC. However, live-cell imaging studies have North Carolina; 3Department of Anesthesiology, University of Colorado, revealed that the length and outcome of this mitotic arrest 4 Aurora, Colorado; and Department of Medicine, Stanford University, is variable within and among tumor cell lines. For example, Stanford, California apoptosis may be activated directly from mitotic arrest. Note: Supplementary data for this article are available at Cancer Research fi Online (http://cancerres.aacrjournals.org/). Otherwise, arrested cells undergo mitotic slippage, de ned as an aberrant exit in the presence of misaligned chromo- Current address for R. Sinnott, P. Taus, and A.W. Whitehurst: Simmons somes thereby forming micronucleated cells that can either Comprehensive Cancer Center, UT-Southwestern Medical Center, Dallas, – Texas. die, arrest, or reenter a subsequent division cycle (6 8). This slippage from an SAC-mediated mitotic arrest has been Corresponding Author: Angelique W. Whitehurst, UT-South- western Medical Center, 6001 Forest Park Drive, Dallas, TX 75390- implicated as a survival mechanism, as delaying mitotic 8807. Phone 214-645-6066; Fax: 214-648-7084; E-mail: exit, either by inhibiting an activator of the APC/C, CDC20, [email protected] or overexpressing cyclin B1, can increase mitotic dwell time doi: 10.1158/0008-5472.CAN-13-3398 and cell death during or following mitosis (6, 9). The 2014 American Association for Cancer Research. prolonged mitotic arrest may allow for accumulation of
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death signals that trigger apoptosis (10, 11). However, the Immunofluorescence molecular components that promote mitotic slippage, par- Cells were grown on glass coverslips, fixed in 3.7% formal- ticularly in chemoresistant tumor cell lines are unclear. dehyde, permeabilized with 0.5% Triton X-100, and blocked Previously, we established a pan-genomic, siRNA-based with PBS, 0.1% Tween-20, 10 mg/mL bovine serum albumin screening platform to identify gene products that modulate (PBTA). Slips were incubated with primary antibodies in PBTA sensitivity of NSCLC cells to paclitaxel (12). Here, we use this and, following PBTA washes, incubated with Alexa Fluor– platform to investigate the molecular components supporting conjugated secondary antibodies (Invitrogen). For BUBR1 resistance to paclitaxel in a NSCLC system that exhibits no staining, cells were fixed in cold methanol. For microtubule loss of viability following exposure to doses as high as 1 mmol/L. preservation in Fig. 3C, cells were extracted with BRB80 (80 At single cell resolution, we find that resistant cells undergo mmol/L PIPES pH 6.8, 1 mmol/L MgCl2, 5 mmol/L EGTA) and mitotic slippage and survive as micronucleated cells, indicative 0.5% Triton X-100 for 30 seconds followed by a 0.5% glutaral- that resistance is because of a regulatory setting that permits dehyde fix and 0.1% NaBH4 quench. Slides were imaged on an the deflection of mitotic stress–induced cell death. In agree- Axioimager upright microscope (Zeiss) equipped with a ment with this notion, a global screen discovered components, charge-coupled device camera or a Leica CTR5500 upright which when depleted, sensitize these chemorefractory cells to scope with a monochrome digital camera (Leica DFC340 FX). paclitaxel. Suppression of a cohort of these chemosensitizers Quantitation of fluorescence was performed with ImageJ induced a protracted mitotic arrest, which we find is essential software and normalized to cytoplasmic fluorescence. for postmitotic cell death. Functional elaboration of these chemosensitizers reveals that prolonging mitotic arrest can Stable cell line production be accomplished either by direct inhibition of the APC/C, or Cell lines stably expressing green fluorescent protein-his- through collateral spindle damage, because of the depletion of tone H2B (GFP-H2B) or myc-TRIM69A were generated by CASC1 or TRIM69, which we reveal here are novel regulators of retroviral transduction. Retrovirus was produced by transfec- mitotic spindle assembly in tumor cells. Thus, prolonging tion of 293GP cells with vesicular stomatitis virus G protein mitotic arrest, which can be achieved through multiple ave- (VSV-G) and either pCLNCX-GFP-H2B (gift from Gray Pear- nues, is a dominant mechanism to sensitize otherwise pacli- son) or pLPCX-myc-TRIM69A. Virus was harvested 48 hours taxel-resistant NSCLC cells. after transfection and transduced cells were selected with geneticin (pCLNCX-GFP-H2B) or puromycin (pLPCX-myc- Materials and Methods TRIM69A). Cells and reagents High-content live-cell imaging Human bronchial epithelial cells (HBEC), NSCLC, 293, and Cell lines stably expressing GFP-H2B were transfected in a HeLa cells were a gift from J. Minna and M. White (University of 96-well plate and exposed to vehicle or paclitaxel 48 hours after Texas Southwestern Medical Center, Dallas, TX). HeLa, H1299, transfection and, unless otherwise indicated, imaged imme- HCC4017, HCC1171, H1299, H1155, and HBEC lines were val- diately following the addition of paclitaxel. Imaging was per- idated by short tandem repeat analysis. NSCLC cell lines were formed on a BD Pathway 855 Bioimager using a 40 or a 20 maintained in RPMI medium (Gibco) with 5% fetal bovine high-numerical aperture objective. Images were taken every 20 serum (FBS). HBEC cell lines were maintained in keratinocyte minutes for 48 to 72 hours. Image sequences were generated medium plus supplements (Gibco). HeLa and 293 cells were using ImageJ and manually quantified. maintained in DMEM with 10% FBS. Paclitaxel (Sigma or Tocris), proTAME (Boston Biochem), and Nocodazole (Sigma) siRNA screen were dissolved in dimethyl sulfoxide (DMSO). Cell-Titer Glo A 2-condition, triplicate analysis screen was performed in a (CTG) and APO-ONE were obtained from Promega. Dharmafect 96-well plate format using a Thermo-Fisher library that targets transfection reagents were obtained from Thermo-Fisher. Con- 21,127 unique genes (12). HCC366 cells were transfected with trol siRNA transfections were performed with either non-target- 40 nmol/L siRNAs for 48 hours, followed by exposure to vehicle ing siRNA pool (Dharmacon) or a pool targeting DLNB14 (12). or 10 nmol/L paclitaxel for an additional 48 hours. Subse- quently, CTG was added and values were read on an EnVision Paclitaxel dose curves Plate Reader. The screening protocol was identical to that Cell lines were plated in 96-well plates to reach 50% con- previously described with the following exceptions: HCC366 fluence at 48 hours, when they were exposed to paclitaxel for cells were seeded at 1 104, transfected with Dharmafect 2 48 hours. Cell viability assessed using the Cell-Titer Glo assay. complexed siRNAs in RPMI medium, and cells were treated at 48 hours after transfection with vehicle or paclitaxel and a final Immunoblotting FBS concentration of 10% (12). High interest chemosensitizers Cells were lysed in boiling 2 Laemmli sample buffer and were ranked by z-score (Supplementary Methods). resolved by SDS-PAGE. Antibodies used as follows: actin, ANAPC5, CASC1, GAPDH, MCL-1, PDE3B, Myc-A14, Myc- siRNA transfections 9E10, GST (Santa Cruz); cleaved caspase-3 (Epitomics); siRNA transfections were performed using Thermo-Fisher MAD2L1 (Covance); TRIM69, b-tubulin (Sigma); pericentrin or Sigma siRNA pools. Pools were used at a final concentration (Abcam); phospho-histone-H3 (Millipore). of 50 nmol/L for indicated times.
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Recoupling Mitotic Stress to Programmed Cell Death
Quantitative reverse transcription PCR paclitaxel starting 10 days after injection, at a frequency of 2 Total RNA was collected using the GenElute Mammalian days per week for 4 weeks. Total RNA Miniprep Kit (Sigma). Two micrograms of total RNA was used in subsequent reverse transcription using the Hematoxylin and eosin staining High-Capacity cDNA Reverse Transcription Kit (Applied Bio- Tumors from xenograft mouse studies were excised and systems). Quantitative reverse transcription PCR (qRT-PCR) formalin fixed and paraffin embedded. Tissue was processed was performed with TaqMan gene expression assays and by routine microtomy into 5 to 6 mm sections for automated ribosomal protein L27 (RPL27) was the endogenous control. staining. At least 7 fields were manually quantitated for micro- nucleated cells. Colony formation assays HCC366 cells were transfected in a 24-well format and TUNEL staining exposed to 0 and 10 nmol/L paclitaxel 48 hours after trans- Terminal deoxynucleotidyl transferase–mediated dUTP nick fection. Ninety-six hours after transfection, 2 103 viable cells end label (TUNEL) staining for apoptotic cells in tissue sections were replated in a 6-well format. Cells were fed biweekly for up was performed using the DeadEnd Fluorometric TUNEL Sys- to 3 weeks before formaldehyde fixation and Geimsa staining. tem (Promega) standard protocol. Apoptotic cells were labeled Colonies were counted manually. with fluorescein, and the sections were counterstained with propidium iodide. At least 6 fields were counted per sample. Microtubule regrowth assay Cells were exposed to 11 mmol/L nocodazole for 1 hour, 72 Results hours after transfection. Cells were then rinsed with PHEM Pan-genomic screening reveals components that buffer (60 mmol/L PIPES, 25 mmol/L HEPES, 10 mmol/L liberate tumor cells from mitotic stress–induced death EGTA, 2 mmol/L MgCl2,1mmol/L paclitaxel) and placed in As a discovery platform for identifying mechanisms that fresh media to recover for the time indicated. Cells were then promote resistance to paclitaxel-induced cell death, we select- permeabilized with 0.2% Triton X-100 for 1 minute then fixed ed HCC366 cells, a member of a cohort of NSCLC cell lines, and immunostained. which undergo limited viability loss and no activation of caspase-3 following exposure to escalating doses of paclitaxel In vivo polymerized tubulin assay (Fig. 1A and B). Although cell lines in this cohort exhibit Seventy-two hours after transfection, cells were lysed in minimal viability loss following paclitaxel exposure, a 10 microtubule stabilizing buffer (100 mmol/L PIPES, 2 mol/L nmol/L dose is sufficient to induce multipolar spindles, mis- glycerol, 0.1 M MgCl2, 2 mmol/L EGTA, 0.5% Triton X-100, aligned chromosomes, and generate micronucleated progeny 5 mmol/L paclitaxel). Subsequently, whole-cell lysates samples (Fig. 1C and Supplementary S1A), indicating that these cells were collected and centrifuged for 30 minutes at 4 Cand have an intact SAC. Live-cell imaging studies demonstrated 16,000 g. The supernatant (monomeric tubulin) was collect- that paclitaxel induced a MAD2- and BUBR1-dependent mitot- ed and pellet (polymerized tubulin) resuspended in microtu- ic arrest that uniformly led to mitotic slippage and the gen- bule stabilizing buffer. Fractions were resolved by SDS-PAGE. eration of micronucleated progeny (Fig. 1D). Single-cell lineage tracing of HCC366 micronucleates, beginning 72 hours after cDNA expression and plasmids paclitaxel exposure, revealed that the majority (92%) of these Cells were transfected with cDNA expression vectors using cells continued to survive for 40 hours and 8% successfully Lipofectamine 2000 (Invitrogen). Plasmids used: Tomato-H2B, underwent a subsequent division cycle (Fig. 1E and Supple- pCMV-myc (Clontech), pCMV-myc-TRIM69A, pCMV-myc- mentary Fig. S1B and Supplementary Video S1). Replating TRIM69B, and pCMV-myc-TRIM69A (C50S/C53S). assays revealed that 40% to 50% of treated cells were capable of colony formation, indicating that these cells, despite mitotic Tumor xenografts damage, maintain the capacity to proliferate (Supplementary pLKO.1 vectors expressing short hairpin RNA (shRNA) were Fig. S1C). In contrast, a representative sensitive cell line, H1155, used to generate lentivirus to infect HCC366 cells. Target undergoes a dramatic mitotic arrest resolved by either cell knockdown was assessed 72 hours after infection. Cells were death or micronucleation at 100 nmol/L (Supplementary harvested 96 hours after infection and 2 106 cells were Fig. S1D). The HCC366 mitotic slippage response was also injected into the flank of female NSG (NOD.Cg-Prkdcscid recapitulated in vivo, as tumors grown subcutaneously in Il2rgtm1Wjl/SzJ JAX) mice. The protocol used 10 week old mice immune-deficient mice exposed to paclitaxel were composed weighing 20–26 grams. A total of 3 106 cells in 4-week old of micronucleated cells (Fig. 1F). This finding suggests that mice weighing 15–20 grams were used for paclitaxel studies. HCC366 cells harbor a regulatory context in which mitotic Mice were bred at University of North Carolina at Chapel Hill, stress is uncoupled from tumor cell death, leading to paclitaxel Chapel Hill, NC. All mice were maintained in sterile conditions resistance and continued tumor cell proliferation. according to an approved Institutional Animal Care and Use To comprehensively investigate the molecular basis for Committee protocol and abiding by all University of North deflection of paclitaxel-induced death, we performed a pan- Carolina Animal Welfare guidelines. Tumor growth was mon- genomic, siRNA-based loss of function screen in the presence itored by caliper measurement at indicated time points. In and absence of 10 nmol/L paclitaxel in HCC366 cells (Supple- paclitaxel experiments, mice were treated with 20 mg/kg of mentary Fig. S1E and S1F). This analysis returned 49 candidate
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A B HCC366 H1155
HCC366 Pac (nmol/L): 0 1.0 10 100 0 1.0 10 100 IB: 1.0 HCC1171 Cl. caspase-3 H2887 HCC515 GAPDH
0.5 H1299 C Vehicle 10 nmol/L Paclitaxel A549 Fraction remaining Fraction H1155 0 00.11.0 10 100 1,000 Pac (nmol/L) β-Tubulin Pericentrin DAPI DAPI
D 5 E 5 HCC366 HCC366 100 4 4 80 3 3 60 2 2 (min ×100)
(min ×100) 40 1 1 time Mitotic transit Mitotic transit time Mitotic transit 20
0 cells % of Micronucleated 0 0 Pac (nmol/L): 0.0 0.1 1.0 10 100 Pac (nmol/L): 0 10 0 10 0 10 Cell fate: Min: 105 126 168 231 252 Min: 120 232 116 172 76 112 Death Mitotic fate: 2 daughters siRNA: CTRL MAD2 BUBR1 Mitosis
Micronucleated cell(s) Interphase
F ×20 Zoom
Vehicle G. 20 mg/kg paclitaxel
Figure 1. A, paclitaxel dose curves in indicated NSCLC cell lines. Each point is the mean standard error of the mean (SEM) for three independent experiments. B, whole-cell lysates from HCC366 and H1155 exposed to paclitaxel for 48 hours were immunoblotted as indicated. C, immunostaining of HCC366 cells treated for 24 hours. Arrowheads, micronucleated cells. Scale bars, 5 or 15 mm (right). D, single-cell lineage tracing of HCC366 cells stably expressing GFP-H2B (HCC366-GFP-H2B) for 48 hours post-paclitaxel exposure. Each circle represents a single cell. Bar is mean mitotic transit time, which is also indicated. Right, cells were transfected with indicated siRNAs for 48 hours before drug exposure. E, quantitation of single-cell lineage tracing of HCC366-GFP-H2B micronucleates after exposure to 10 nmol/L paclitaxel. Bars represent mean range for 100 cells over two experiments. F, H&E staining of HCC366 subcutaneous tumor xenografts treated as indicated. Arrowheads, micronucleated cells. Scale bars, 40 mm. Zoomed images are of white-boxed area.
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Downloaded from cancerres.aacrjournals.org on October 4, 2021. © 2014 American Association for Cancer Research. Published OnlineFirst May 23, 2014; DOI: 10.1158/0008-5472.CAN-13-3398
Recoupling Mitotic Stress to Programmed Cell Death
siRNA pools with a z-score of <