Testing the Homoscedasticity Assumption
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Understanding Linear and Logistic Regression Analyses
EDUCATION • ÉDUCATION METHODOLOGY Understanding linear and logistic regression analyses Andrew Worster, MD, MSc;*† Jerome Fan, MD;* Afisi Ismaila, MSc† SEE RELATED ARTICLE PAGE 105 egression analysis, also termed regression modeling, come). For example, a researcher could evaluate the poten- Ris an increasingly common statistical method used to tial for injury severity score (ISS) to predict ED length-of- describe and quantify the relation between a clinical out- stay by first producing a scatter plot of ISS graphed against come of interest and one or more other variables. In this ED length-of-stay to determine whether an apparent linear issue of CJEM, Cummings and Mayes used linear and lo- relation exists, and then by deriving the best fit straight line gistic regression to determine whether the type of trauma for the data set using linear regression carried out by statis- team leader (TTL) impacts emergency department (ED) tical software. The mathematical formula for this relation length-of-stay or survival.1 The purpose of this educa- would be: ED length-of-stay = k(ISS) + c. In this equation, tional primer is to provide an easily understood overview k (the slope of the line) indicates the factor by which of these methods of statistical analysis. We hope that this length-of-stay changes as ISS changes and c (the “con- primer will not only help readers interpret the Cummings stant”) is the value of length-of-stay when ISS equals zero and Mayes study, but also other research that uses similar and crosses the vertical axis.2 In this hypothetical scenario, methodology. -
The Detection of Heteroscedasticity in Regression Models for Psychological Data
Psychological Test and Assessment Modeling, Volume 58, 2016 (4), 567-592 The detection of heteroscedasticity in regression models for psychological data Andreas G. Klein1, Carla Gerhard2, Rebecca D. Büchner2, Stefan Diestel3 & Karin Schermelleh-Engel2 Abstract One assumption of multiple regression analysis is homoscedasticity of errors. Heteroscedasticity, as often found in psychological or behavioral data, may result from misspecification due to overlooked nonlinear predictor terms or to unobserved predictors not included in the model. Although methods exist to test for heteroscedasticity, they require a parametric model for specifying the structure of heteroscedasticity. The aim of this article is to propose a simple measure of heteroscedasticity, which does not need a parametric model and is able to detect omitted nonlinear terms. This measure utilizes the dispersion of the squared regression residuals. Simulation studies show that the measure performs satisfactorily with regard to Type I error rates and power when sample size and effect size are large enough. It outperforms the Breusch-Pagan test when a nonlinear term is omitted in the analysis model. We also demonstrate the performance of the measure using a data set from industrial psychology. Keywords: Heteroscedasticity, Monte Carlo study, regression, interaction effect, quadratic effect 1Correspondence concerning this article should be addressed to: Prof. Dr. Andreas G. Klein, Department of Psychology, Goethe University Frankfurt, Theodor-W.-Adorno-Platz 6, 60629 Frankfurt; email: [email protected] 2Goethe University Frankfurt 3International School of Management Dortmund Leipniz-Research Centre for Working Environment and Human Factors 568 A. G. Klein, C. Gerhard, R. D. Büchner, S. Diestel & K. Schermelleh-Engel Introduction One of the standard assumptions underlying a linear model is that the errors are inde- pendently identically distributed (i.i.d.). -
Application of General Linear Models (GLM) to Assess Nodule Abundance Based on a Photographic Survey (Case Study from IOM Area, Pacific Ocean)
minerals Article Application of General Linear Models (GLM) to Assess Nodule Abundance Based on a Photographic Survey (Case Study from IOM Area, Pacific Ocean) Monika Wasilewska-Błaszczyk * and Jacek Mucha Department of Geology of Mineral Deposits and Mining Geology, Faculty of Geology, Geophysics and Environmental Protection, AGH University of Science and Technology, 30-059 Cracow, Poland; [email protected] * Correspondence: [email protected] Abstract: The success of the future exploitation of the Pacific polymetallic nodule deposits depends on an accurate estimation of their resources, especially in small batches, scheduled for extraction in the short term. The estimation based only on the results of direct seafloor sampling using box corers is burdened with a large error due to the long sampling interval and high variability of the nodule abundance. Therefore, estimations should take into account the results of bottom photograph analyses performed systematically and in large numbers along the course of a research vessel. For photographs taken at the direct sampling sites, the relationship linking the nodule abundance with the independent variables (the percentage of seafloor nodule coverage, the genetic types of nodules in the context of their fraction distribution, and the degree of sediment coverage of nodules) was determined using the general linear model (GLM). Compared to the estimates obtained with a simple Citation: Wasilewska-Błaszczyk, M.; linear model linking this parameter only with the seafloor nodule coverage, a significant decrease Mucha, J. Application of General in the standard prediction error, from 4.2 to 2.5 kg/m2, was found. The use of the GLM for the Linear Models (GLM) to Assess assessment of nodule abundance in individual sites covered by bottom photographs, outside of Nodule Abundance Based on a direct sampling sites, should contribute to a significant increase in the accuracy of the estimation of Photographic Survey (Case Study nodule resources. -
The Simple Linear Regression Model
The Simple Linear Regression Model Suppose we have a data set consisting of n bivariate observations {(x1, y1),..., (xn, yn)}. Response variable y and predictor variable x satisfy the simple linear model if they obey the model yi = β0 + β1xi + ǫi, i = 1,...,n, (1) where the intercept and slope coefficients β0 and β1 are unknown constants and the random errors {ǫi} satisfy the following conditions: 1. The errors ǫ1, . , ǫn all have mean 0, i.e., µǫi = 0 for all i. 2 2 2 2. The errors ǫ1, . , ǫn all have the same variance σ , i.e., σǫi = σ for all i. 3. The errors ǫ1, . , ǫn are independent random variables. 4. The errors ǫ1, . , ǫn are normally distributed. Note that the author provides these assumptions on page 564 BUT ORDERS THEM DIFFERENTLY. Fitting the Simple Linear Model: Estimating β0 and β1 Suppose we believe our data obey the simple linear model. The next step is to fit the model by estimating the unknown intercept and slope coefficients β0 and β1. There are various ways of estimating these from the data but we will use the Least Squares Criterion invented by Gauss. The least squares estimates of β0 and β1, which we will denote by βˆ0 and βˆ1 respectively, are the values of β0 and β1 which minimize the sum of errors squared S(β0, β1): n 2 S(β0, β1) = X ei i=1 n 2 = X[yi − yˆi] i=1 n 2 = X[yi − (β0 + β1xi)] i=1 where the ith modeling error ei is simply the difference between the ith value of the response variable yi and the fitted/predicted valuey ˆi. -
Auditor: an R Package for Model-Agnostic Visual Validation and Diagnostics
auditor: an R Package for Model-Agnostic Visual Validation and Diagnostics APREPRINT Alicja Gosiewska Przemysław Biecek Faculty of Mathematics and Information Science Faculty of Mathematics and Information Science Warsaw University of Technology Warsaw University of Technology Poland Faculty of Mathematics, Informatics and Mechanics [email protected] University of Warsaw Poland [email protected] May 27, 2020 ABSTRACT Machine learning models have spread to almost every area of life. They are successfully applied in biology, medicine, finance, physics, and other fields. With modern software it is easy to train even a complex model that fits the training data and results in high accuracy on test set. The problem arises when models fail confronted with the real-world data. This paper describes methodology and tools for model-agnostic audit. Introduced tech- niques facilitate assessing and comparing the goodness of fit and performance of models. In addition, they may be used for analysis of the similarity of residuals and for identification of outliers and influential observations. The examination is carried out by diagnostic scores and visual verification. Presented methods were implemented in the auditor package for R. Due to flexible and con- sistent grammar, it is simple to validate models of any classes. K eywords machine learning, R, diagnostics, visualization, modeling 1 Introduction Predictive modeling is a process that uses mathematical and computational methods to forecast outcomes. arXiv:1809.07763v4 [stat.CO] 26 May 2020 Lots of algorithms in this area have been developed and are still being develop. Therefore, there are countless possible models to choose from and a lot of ways to train a new new complex model. -
ROC Curve Analysis and Medical Decision Making
ROC curve analysis and medical decision making: what’s the evidence that matters for evidence-based diagnosis ? Piergiorgio Duca Biometria e Statistica Medica – Dipartimento di Scienze Cliniche Luigi Sacco – Università degli Studi – Via GB Grassi 74 – 20157 MILANO (ITALY) [email protected] 1) The ROC (Receiver Operating Characteristic) curve and the Area Under the Curve (AUC) The ROC curve is the statistical tool used to analyse the accuracy of a diagnostic test with multiple cut-off points. The test could be based on a continuous diagnostic indicant, such as a serum enzyme level, or just on an ordinal one, such as a classification based on radiological imaging. The ROC curve is based on the probability density distributions, in actually diseased and non diseased patients, of the diagnostician’s confidence in a positive diagnosis, and upon a set of cut-off points to separate “positive” and “negative” test results (Egan, 1968; Bamber, 1975; Swets, Pickett, 1982; Metz, 1986; Zhou et al, 2002). The Sensitivity (SE) – the proportion of diseased turned out to be test positive – and the Specificity (SP) – the proportion of non diseased turned out to be test negative – will depend on the particular confidence threshold the observer applies to partition the continuously distributed perceptions of evidence into positive and negative test results. The ROC curve is the plot of all the pairs of True Positive Rates (TPR = SE), as ordinate, and False Positive Rates (FPR = (1 – SP)), as abscissa, related to all the possible cut-off points. An ROC curve represents all of the compromises between SE and SP can be achieved, changing the confidence threshold. -
Estimating the Variance of a Propensity Score Matching Estimator for the Average Treatment Effect
Observational Studies 4 (2018) 71-96 Submitted 5/15; Published 3/18 Estimating the variance of a propensity score matching estimator for the average treatment effect Ronnie Pingel [email protected] Department of Statistics Uppsala University Uppsala, Sweden Abstract This study considers variance estimation when estimating the asymptotic variance of a propensity score matching estimator for the average treatment effect. We investigate the role of smoothing parameters in a variance estimator based on matching. We also study the properties of estimators using local linear estimation. Simulations demonstrate that large gains can be made in terms of mean squared error, bias and coverage rate by prop- erly selecting smoothing parameters. Alternatively, a residual-based local linear estimator could be used as an estimator of the asymptotic variance. The variance estimators are implemented in analysis to evaluate the effect of right heart catheterisation. Keywords: Average Causal Effect, Causal Inference, Kernel estimator 1. Introduction Matching estimators belong to a class of estimators of average treatment effects (ATEs) in observational studies that seek to balance the distributions of covariates in a treatment and control group (Stuart, 2010). In this study we consider one frequently used matching method, the simple nearest-neighbour matching with replacement (Rubin, 1973; Abadie and Imbens, 2006). Rosenbaum and Rubin (1983) show that instead of matching on covariates directly to remove confounding, it is sufficient to match on the propensity score. In observational studies the propensity score must almost always be estimated. An important contribution is therefore Abadie and Imbens (2016), who derive the large sample distribution of a nearest- neighbour propensity score matching estimator when using the estimated propensity score. -
Chapter 2 Simple Linear Regression Analysis the Simple
Chapter 2 Simple Linear Regression Analysis The simple linear regression model We consider the modelling between the dependent and one independent variable. When there is only one independent variable in the linear regression model, the model is generally termed as a simple linear regression model. When there are more than one independent variables in the model, then the linear model is termed as the multiple linear regression model. The linear model Consider a simple linear regression model yX01 where y is termed as the dependent or study variable and X is termed as the independent or explanatory variable. The terms 0 and 1 are the parameters of the model. The parameter 0 is termed as an intercept term, and the parameter 1 is termed as the slope parameter. These parameters are usually called as regression coefficients. The unobservable error component accounts for the failure of data to lie on the straight line and represents the difference between the true and observed realization of y . There can be several reasons for such difference, e.g., the effect of all deleted variables in the model, variables may be qualitative, inherent randomness in the observations etc. We assume that is observed as independent and identically distributed random variable with mean zero and constant variance 2 . Later, we will additionally assume that is normally distributed. The independent variables are viewed as controlled by the experimenter, so it is considered as non-stochastic whereas y is viewed as a random variable with Ey()01 X and Var() y 2 . Sometimes X can also be a random variable. -
An Introduction to Logistic Regression: from Basic Concepts to Interpretation with Particular Attention to Nursing Domain
J Korean Acad Nurs Vol.43 No.2, 154 -164 J Korean Acad Nurs Vol.43 No.2 April 2013 http://dx.doi.org/10.4040/jkan.2013.43.2.154 An Introduction to Logistic Regression: From Basic Concepts to Interpretation with Particular Attention to Nursing Domain Park, Hyeoun-Ae College of Nursing and System Biomedical Informatics National Core Research Center, Seoul National University, Seoul, Korea Purpose: The purpose of this article is twofold: 1) introducing logistic regression (LR), a multivariable method for modeling the relationship between multiple independent variables and a categorical dependent variable, and 2) examining use and reporting of LR in the nursing literature. Methods: Text books on LR and research articles employing LR as main statistical analysis were reviewed. Twenty-three articles published between 2010 and 2011 in the Journal of Korean Academy of Nursing were analyzed for proper use and reporting of LR models. Results: Logistic regression from basic concepts such as odds, odds ratio, logit transformation and logistic curve, assumption, fitting, reporting and interpreting to cautions were presented. Substantial short- comings were found in both use of LR and reporting of results. For many studies, sample size was not sufficiently large to call into question the accuracy of the regression model. Additionally, only one study reported validation analysis. Conclusion: Nurs- ing researchers need to pay greater attention to guidelines concerning the use and reporting of LR models. Key words: Logit function, Maximum likelihood estimation, Odds, Odds ratio, Wald test INTRODUCTION The model serves two purposes: (1) it can predict the value of the depen- dent variable for new values of the independent variables, and (2) it can Multivariable methods of statistical analysis commonly appear in help describe the relative contribution of each independent variable to general health science literature (Bagley, White, & Golomb, 2001). -
Njit-Etd2007-041
Copyright Warning & Restrictions The copyright law of the United States (Title 17, United States Code) governs the making of photocopies or other reproductions of copyrighted material. Under certain conditions specified in the law, libraries and archives are authorized to furnish a photocopy or other reproduction. One of these specified conditions is that the photocopy or reproduction is not to be “used for any purpose other than private study, scholarship, or research.” If a, user makes a request for, or later uses, a photocopy or reproduction for purposes in excess of “fair use” that user may be liable for copyright infringement, This institution reserves the right to refuse to accept a copying order if, in its judgment, fulfillment of the order would involve violation of copyright law. Please Note: The author retains the copyright while the New Jersey Institute of Technology reserves the right to distribute this thesis or dissertation Printing note: If you do not wish to print this page, then select “Pages from: first page # to: last page #” on the print dialog screen The Van Houten library has removed some of the personal information and all signatures from the approval page and biographical sketches of theses and dissertations in order to protect the identity of NJIT graduates and faculty. ABSTRACT PROBLEMS RELATED TO EFFICACY MEASUREMENT AND ANALYSES by Sibabrata Banerjee In clinical research it is very common to compare two treatments on the basis of an efficacy vrbl Mr pfll f Χ nd Υ dnt th rpn f ptnt n th t trtnt A nd rptvl th -
The Conspiracy of Random Predictors and Model Violations Against Classical Inference in Regression 1 Introduction
The Conspiracy of Random Predictors and Model Violations against Classical Inference in Regression A. Buja, R. Berk, L. Brown, E. George, E. Pitkin, M. Traskin, K. Zhang, L. Zhao March 10, 2014 Dedicated to Halbert White (y2012) Abstract We review the early insights of Halbert White who over thirty years ago inaugurated a form of statistical inference for regression models that is asymptotically correct even under \model misspecification.” This form of inference, which is pervasive in econometrics, relies on the \sandwich estimator" of standard error. Whereas the classical theory of linear models in statistics assumes models to be correct and predictors to be fixed, White permits models to be \misspecified” and predictors to be random. Careful reading of his theory shows that it is a synergistic effect | a \conspiracy" | of nonlinearity and randomness of the predictors that has the deepest consequences for statistical inference. It will be seen that the synonym \heteroskedasticity-consistent estimator" for the sandwich estimator is misleading because nonlinearity is a more consequential form of model deviation than heteroskedasticity, and both forms are handled asymptotically correctly by the sandwich estimator. The same analysis shows that a valid alternative to the sandwich estimator is given by the \pairs bootstrap" for which we establish a direct connection to the sandwich estimator. We continue with an asymptotic comparison of the sandwich estimator and the standard error estimator from classical linear models theory. The comparison shows that when standard errors from linear models theory deviate from their sandwich analogs, they are usually too liberal, but occasionally they can be too conservative as well. -
Propensity Score Analysis with Hierarchical Data
Section on Statistics in Epidemiology Propensity score analysis with hierarchical data Fan Li, Alan M. Zaslavsky, Mary Beth Landrum Department of Health Care Policy, Harvard Medical School 180 Longwood Avenue, Boston, MA 02115 October 29, 2007 Abstract nors et al., 1996; D’Agostino, 1998, and references therein). This approach, which involves comparing subjects weighted Propensity score (Rosenbaum and Rubin, 1983) methods are (or stratified, matched) according to their propensity to re- being increasingly used as a less parametric alternative to tra- ceive treatment (i.e., propensity score), attempts to balance ditional regression methods in medical care and health policy subjects in treatment groups in terms of observed character- research. Data collected in these disciplines are often clus- istics as would occur in a randomized experiment. Propensity tered or hierarchically structured, in the sense that subjects are score methods permit control of all observed confounding fac- grouped together in one or more ways that may be relevant tors that might influence both choice of treatment and outcome to the analysis. However, propensity score was developed using a single composite measure, without requiring specifi- and has been applied in settings with unstructured data. In cation of the relationships between the control variables and this report, we present and compare several propensity-score- outcome. weighted estimators of treatment effect in the context of hier- Propensity score methods were developed and have been archically structured