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Annelida, Lumbricidae) - Description Based on Morphological and Molecular Data
A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Díaz Cosín, Darío J., Marta Novo, Rosa Fernández, Daniel Fernández Marchán, and Mónica Gutiérrez. 2014. “A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data.” ZooKeys (399): 71-87. doi:10.3897/zookeys.399.7273. http:// dx.doi.org/10.3897/zookeys.399.7273. Published Version doi:10.3897/zookeys.399.7273 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:12406906 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA A peer-reviewed open-access journal ZooKeys 399: A71–87 new (2014) earthworm species within a controversial genus: Eiseniona gerardoi sp. n... 71 doi: 10.3897/zookeys.399.7273 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data Darío J. Díaz Cosín1,†, Marta Novo1,2,‡, Rosa Fernández1,3,§, Daniel Fernández Marchán1,|, Mónica Gutiérrez1,¶ 1 -
Reviews in Agricultural Science Vol 3
n ★ En tio v c ir u o d n o m r e p n o i t Please cite this article as: B ★ ★ L i e Dewi and Senge, Reviews in Agricultural Science, 3:25-35, 2015 f c e n S e i Doi: 10.7831/ras.3.25 c REVIEWS OPEN ACCESS EARTHWORM DIVERSITY AND ECOSYSTEM SERVICES UNDER THREAT Widyatmani S Dewi1 and Masateru Senge2 1 Faculty of Agriculture, Sebelas Maret University, Jl. Ir. Sutami No.36A, Kentingan, Surakarta, Indonesia 57126 2 Faculty of Applied Biological Sciences, Gifu University, Yanagido 1-1, Gifu 501-1193, Japan ABSTRACT Biodiversity affects human well-being and represents an essential determinant of ecosystem stability. However, the importance of below-ground biodiversity, and earthworm biodiversity in particular, has not received much attention. Earthworms represent the most important group of soil macrofauna. They play a crucial role in various biological processes in soil, and affect ecosystem services such as soil health and productivity, water regulation, restoration of degraded lands, and the balance of greenhouse gases. Anthropogenic activities can lead to a rapid reduction or loss of earthworm diversity, and threaten ecosystem services as well as human well-being. Therefore, conservation of earthworm diversity should receive urgent attention. Farmers need to be made aware of the importance of earthworm diversity conservation and its benefits. Local ecological knowledge is required for communication between scientists and farmers; moreover, efficient strategies for earthworm diversity conservation need to be developed. This paper intends to communicate the importance of earthworm diversity conservation. Development of conservation management to prevent earthworm diversity decline should be done wisely and involve all stakeholders. -
Taxonomic Assessment of Lumbricidae (Oligochaeta) Earthworm Genera Using DNA Barcodes
European Journal of Soil Biology 48 (2012) 41e47 Contents lists available at SciVerse ScienceDirect European Journal of Soil Biology journal homepage: http://www.elsevier.com/locate/ejsobi Original article Taxonomic assessment of Lumbricidae (Oligochaeta) earthworm genera using DNA barcodes Marcos Pérez-Losada a,*, Rebecca Bloch b, Jesse W. Breinholt c, Markus Pfenninger b, Jorge Domínguez d a CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661 Vairão, Portugal b Biodiversity and Climate Research Centre, Lab Centre, Biocampus Siesmayerstraße, 60323 Frankfurt am Main, Germany c Department of Biology, Brigham Young University, Provo, UT 84602-5181, USA d Departamento de Ecoloxía e Bioloxía Animal, Universidade de Vigo, E-36310, Spain article info abstract Article history: The family Lumbricidae accounts for the most abundant earthworms in grasslands and agricultural Received 26 May 2011 ecosystems in the Paleartic region. Therefore, they are commonly used as model organisms in studies of Received in revised form soil ecology, biodiversity, biogeography, evolution, conservation, soil contamination and ecotoxicology. 14 October 2011 Despite their biological and economic importance, the taxonomic status and evolutionary relationships Accepted 14 October 2011 of several Lumbricidae genera are still under discussion. Previous studies have shown that cytochrome c Available online 30 October 2011 Handling editor: Stefan Schrader oxidase I (COI) barcode phylogenies are informative at the intrageneric level. Here we generated 19 new COI barcodes for selected Aporrectodea specimens in Pérez-Losada et al. [1] including nine species and 17 Keywords: populations, and combined them with all the COI sequences available in Genbank and Briones et al. -
A Case Study of the Exotic Peregrine Earthworm Morphospecies Pontoscolex Corethrurus Shabnam Taheri, Céline Pelosi, Lise Dupont
Harmful or useful? A case study of the exotic peregrine earthworm morphospecies Pontoscolex corethrurus Shabnam Taheri, Céline Pelosi, Lise Dupont To cite this version: Shabnam Taheri, Céline Pelosi, Lise Dupont. Harmful or useful? A case study of the exotic peregrine earthworm morphospecies Pontoscolex corethrurus. Soil Biology and Biochemistry, Elsevier, 2018, 116, pp.277-289. 10.1016/j.soilbio.2017.10.030. hal-01628085 HAL Id: hal-01628085 https://hal.archives-ouvertes.fr/hal-01628085 Submitted on 5 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Harmful or useful? A case study of the exotic peregrine earthworm MARK morphospecies Pontoscolex corethrurus ∗ ∗∗ S. Taheria, , C. Pelosib, L. Duponta, a Université Paris Est Créteil, Université Pierre et Marie Curie, CNRS, INRA, IRD, Université Paris-Diderot, Institut d’écologie et des Sciences de l'environnement de Paris (iEES-Paris), Créteil, France b UMR ECOSYS, INRA, AgroParisTech, Université Paris-Saclay, 78026 Versailles, France ABSTRACT Exotic peregrine earthworms are often considered to cause environmental harm and to have a negative impact on native species, but, as ecosystem engineers, they enhance soil physical properties. Pontoscolex corethrurus is by far the most studied morphospecies and is also the most widespread in tropical areas. -
Study of Phylogenetic Tree and Morphology of Aporrectodea Based on Mitochondrial Marker (16S Rrna Gene) in Some Area South of Baghdad/ Iraq
Iraqi Journal of Biotechnology, 2015, Vol. 14, No. 2 , 47-54 Study of Phylogenetic Tree and Morphology of Aporrectodea Based on Mitochondrial Marker (16S rRNA gene) in Some Area South of Baghdad/ Iraq Najwa Sh. Ahmed1, Nebrass Faleh Chacain2, Falih Hamzah Edan3,Saad M. Nada1, Anas Noori Ibraheem1 1Biotechnology Research Center, AL-Nahrain University, Baghdad 2 Biology dep., College of Science, AL-Mustansiriyah University 3 Research and Development Directorate Received: April 19, 2015 / Accepted: October 11, 2015 Abstract: This study aimed to show the phylogenetic structure of Aporrectodea genus in order to verify its cladistics nature and its taxonomic validity. In this work, collection of Aporrectodea genus from three locations from South of Baghdad, (AL-Karrada, AL-Zafranya and New Baghdad) are studied. First, we used usual morphological characteristics to identify each species than molecular phylogenetic analyses are based on the sequences of mitochondrial 16S rRNA gene regions and used software MEGA6 and Raptorx software. Rresults of the two methods (MEGA 6 and Raptorx software) were cluster groups (organisms of 8 sample from Group1A and Group3) in one group and with distance equal to 0.006, clustering of group 2 as a single group, and reached the highest value between group 2 and group 1(B) with distance equal to 0.272 and to move away genetic traits, Raptorx software, conformation of protein for 16SrRNA appeared as a result of the similarity of Mega6. The marker mitochondrial 16S rRNA gene is a powerful tool for identifying species of earthworms and provides a useful complement to traditional morphological taxonomy. Key words: 16S rRNA, Aporrectodea, Raptorx software. -
Impact of Agricultural Practices on Biodiversity of Soil Invertebrates
Impact of Agricultural Practices on Biodiversity of Soil Invertebrates Impact of • Stefano Bocchi and Francesca Orlando Agricultural Practices on Biodiversity of Soil Invertebrates Edited by Stefano Bocchi and Francesca Orlando Printed Edition of the Special Issue Published in Agronomy www.mdpi.com/journal/agronomy Impact of Agricultural Practices on Biodiversity of Soil Invertebrates Impact of Agricultural Practices on Biodiversity of Soil Invertebrates Editors Stefano Bocchi Francesca Orlando MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editors Stefano Bocchi Francesca Orlando University of Milan University of Milan Italy Italy Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Agronomy (ISSN 2073-4395) (available at: https://www.mdpi.com/journal/agronomy/special issues/Soil Invertebrates). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Volume Number, Page Range. ISBN 978-3-03943-719-1 (Hbk) ISBN 978-3-03943-720-7 (PDF) Cover image courtesy of Valentina Vaglia. c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. -
Appendix 5.3 MON 810 Literature Review – List of All Hits (June 2016
Appendix 5.3 MON 810 literature review – List of all hits (June 2016-May 2017) -Web of ScienceTM Core Collection database 12/8/2016 Web of Science [v.5.23] Export Transfer Service Web of Science™ Page 1 (Records 1 50) [ 1 ] Record 1 of 50 Title: Ground beetle acquisition of Cry1Ab from plant and residuebased food webs Author(s): Andow, DA (Andow, D. A.); Zwahlen, C (Zwahlen, C.) Source: BIOLOGICAL CONTROL Volume: 103 Pages: 204209 DOI: 10.1016/j.biocontrol.2016.09.009 Published: DEC 2016 Abstract: Ground beetles are significant predators in agricultural habitats. While many studies have characterized effects of Bt maize on various carabid species, few have examined the potential acquisition of Cry toxins from live plants versus plant residue. In this study, we examined how live Bt maize and Bt maize residue affect acquisition of Cry1Ab in six species. Adult beetles were collected live from fields with either currentyear Bt maize, oneyearold Bt maize residue, twoyearold Bt maize residue, or fields without any Bt crops or residue for the past two years, and specimens were analyzed using ELISA. Observed Cry1Ab concentrations in the beetles were similar to that reported in previously published studies. Only one specimen of Cyclotrachelus iowensis acquired Cry1Ab from twoyearold maize residue. Three species acquired Cry1Ab from fields with either live plants or plant residue (Cyclotrachelus iowensis, Poecilus lucublandus, Poecilus chalcites), implying participation in both liveplant and residuebased food webs. Two species acquired toxin from fields with live plants, but not from fields with residue (Bembidion quadrimaculatum, Elaphropus incurvus), suggesting participation only in live plantbased food webs. -
French Mediterranean Islands As a Refuge of Relic Earthworm Species: Cataladrilus Porquerollensis Sp
European Journal of Taxonomy 701: 1–22 ISSN 2118-9773 https://doi.org/10.5852/ejt.2020.701 www.europeanjournaloftaxonomy.eu 2020 · Marchán D.F. et al. This work is licensed under a Creative Commons Attribution License (CC BY 4.0). Research article urn:lsid:zoobank.org:pub:D9291955-F619-46EA-90E1-DA756D1B7C55 French Mediterranean islands as a refuge of relic earthworm species: Cataladrilus porquerollensis sp. nov. and Scherotheca portcrosana sp. nov. (Crassiclitellata, Lumbricidae) Daniel F. MARCHÁN 1,3,*, Thibaud DECAËNS 2,*, Darío J. DÍAZ COSÍN 3, Mickaël HEDDE 4, Emmanuel LAPIED 5 & Jorge DOMÍNGUEZ 6 1,6 Grupo de Ecoloxía Animal (GEA), Universidade de Vigo, E-36310 Vigo, Spain. 2 CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, Montpellier, France. 3 Department of Biodiversity, Ecology and Evolution, Faculty of Biology, Universidad Complutense de Madrid, Madrid, Spain. 4 UMR Eco&Sols, INRAE–IRD–CIRAD–SupAgro Montpellier, 2 Place Viala, 34060 Montpellier Cedex 2, France. 5 Taxonomia Biodiversity Fund, 7 rue Beccaria, 72012, Paris, France. * Corresponding authors: [email protected]; [email protected] 3 Email: [email protected] 4 Email: [email protected] 5 Email: [email protected] 6 Email: [email protected] 1 urn:lsid:zoobank.org:author:3B3731B6-B5FB-409A-A7A3-99FD0F96D688 2 urn:lsid:zoobank.org:author:B61F61B2-3012-4526-8FF9-DC94D372AF77 3 urn:lsid:zoobank.org:author:38538B17-F127-4438-9DE2-F9D6C597D044 4 urn:lsid:zoobank.org:author:F4A219F7-7E75-4333-8293-3004B3CD62C5 5 urn:lsid:zoobank.org:author:B1FB8658-DFC3-481C-A0BE-B8488A018611 6 urn:lsid:zoobank.org:author:167575D5-D2CC-4B37-8B1D-0233E6B154E5 Abstract. -
Annelida, Lumbricidae) - Description Based on Morphological and Molecular Data
A peer-reviewed open-access journal ZooKeys 399: A71–87 new (2014) earthworm species within a controversial genus: Eiseniona gerardoi sp. n... 71 doi: 10.3897/zookeys.399.7273 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data Darío J. Díaz Cosín1,†, Marta Novo1,2,‡, Rosa Fernández1,3,§, Daniel Fernández Marchán1,|, Mónica Gutiérrez1,¶ 1 Departamento de Zoología y Antropología Física, Facultad de Biología, Universidad Complutense de Madrid, C/ José Antonio Nováis 2, 28040, Madrid, Spain 2 Cardiff School of Biosciences, Cardiff University, BIOSI 1, Museum Avenue, Cardiff CF10, 3TL, UK3 Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA † http://zoobank.org/38538B17-F127-4438-9DE2-F9D6C597D044 ‡ http://zoobank.org/79DA5419-91D5-4EAB-BC72-1E46F10C716A § http://zoobank.org/99618966-BB50-4A01-8FA0-7B1CC31686B6 | http://zoobank.org/CAB83B57-ABD1-40D9-B16A-654281D71D58 ¶ http://zoobank.org/E1A7E77A-9CD5-4D67-88A3-C7F65AD6A5BE Corresponding author: Darío J. Díaz Cosín ([email protected]) Academic editor: R. Blakemore | Received 17 February 2014 | Accepted 25 March 2014 | Published 9 April 2014 http://zoobank.org/F5AC3116-E79E-4442-9B26-2765A5243D5E Citation: Cosín DJD, Novo M, Fernández R, Marchán DF, Gutiérrez M (2014) A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data. ZooKeys 399: 71–87. doi: 10.3897/zookeys.399.7273 Abstract The morphological and anatomical simplicity of soil dwelling animals, such as earthworms, has limited the establishment of a robust taxonomy making it sometimes subjective to authors’ criteria. -
Phylogenetic and Phenetic Systematics of The
195 PHYLOGENETICAND PHENETICSYSTEMATICS OF THE OPISTHOP0ROUSOLIGOCHAETA (ANNELIDA: CLITELLATA) B.G.M. Janieson Departnent of Zoology University of Queensland Brisbane, Australia 4067 Received September20, L977 ABSTMCT: The nethods of Hennig for deducing phylogeny have been adapted for computer and a phylogran has been constructed together with a stereo- phylogran utilizing principle coordinates, for alL farnilies of opisthopor- ous oligochaetes, that is, the Oligochaeta with the exception of the Lunbriculida and Tubificina. A phenogran based on the sane attributes conpares unfavourably with the phyLogralnsin establishing an acceptable classification., Hennigrs principle that sister-groups be given equal rank has not been followed for every group to avoid elevation of the more plesionorph, basal cLades to inacceptabl.y high ranks, the 0ligochaeta being retained as a Subclass of the class Clitellata. Three orders are recognized: the LumbricuLida and Tubificida, which were not conputed and the affinities of which require further investigation, and the Haplotaxida, computed. The Order Haplotaxida corresponds preciseLy with the Suborder Opisthopora of Michaelsen or the Sectio Diplotesticulata of Yanaguchi. Four suborders of the Haplotaxida are recognized, the Haplotaxina, Alluroidina, Monil.igastrina and Lunbricina. The Haplotaxina and Monili- gastrina retain each a single superfanily and fanily. The Alluroidina contains the superfamiJ.y All"uroidoidea with the fanilies Alluroididae and Syngenodrilidae. The Lurnbricina consists of five superfaniLies. -
Oligochaeta: Acanthodrilidae: Acanthodrilinae, Benhamiinae)
Zootaxa 3458: 4–58 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2012 · Magnolia Press Article ISSN 1175-5334 (online edition) urn:lsid:zoobank.org:pub:5B915EB8-8E2A-4E32-AF91-3D4CD890989A An annotated checklist of the South African Acanthodrilidae (Oligochaeta: Acanthodrilidae: Acanthodrilinae, Benhamiinae) JADWIGA DANUTA PLISKO University of KwaZulu-Natal, School of Life Sciences, P.O. Box X01, Scottsville, 3209 South Africa. E-mail: [email protected] Table of contents Abstract . 4 Introduction . 4 Historical data . 5 Material and methods . 6 Checklist of valid species: Taxonomy . 7 Acanthodrilinae . 7 Benhamiinae . 47 Doubtful taxa . 50 Acknowledgments . 52 References . 52 Appendix 1: List of valid names of South African Acanthodrilidae. 56 Appendix 2: Junior synonyms in South African Acanthodrilidae. 58 Abstract A checklist of acanthodrilid species known from South African biotopes is here compiled from the literature and the unpublished KwaZulu-Natal Museum database of Oligochaeta (NMSAD). Most species belong to one of the two subfamilies, Acanthodrilinae, with a total of 107 valid indigenous species and 17 subspecies, belonging to five genera (Chilota, Eodriloides, Microscolex, Parachilota, Udeina). Furthermore, eight peregrine species of Microscolex (Acanthodrilinae) and Dichogaster (Diplothecodrilus) (Benhamiinae) are included. One of them, Dichogaster (Diplothecodrilus) austeni Beddard, 1901 may occur naturally in north-eastern South Africa. For all recorded species the type localities and known records in South Africa are given. Additional environmental data, when available, are included. The present location of most of the type material is indicated. Five species of Udeina are transferred to Parachilota: Udeina avesicula, U. hogsbackensis, U. septentrionalis, U. pickfordia Lungström, 1968 and U. -
Biomolecular Approach to Oligochaete Taxonomy Dr
Dr. Jaya M et. al. / International Journal of New Technologies in Science and Engineering Vol. 2, Issue 6,Dec 2015, ISSN 2349-0780 Biomolecular Approach To Oligochaete Taxonomy Dr. Jaya. M 1* ,Dr. Aja. M2 and Dr. K. Vijayakumaran Nair3 1* Assistant Professor, Department of Zoology, Sree keralavarma College, Thrissur, Email: [email protected] 2Senior Research Fellow, Department of Zoology, University of Kerala, Kariavatom, Email: [email protected] 3Associate Professor, Department of Zoology, Mar Ivanios College, Thiruvananthapuram, Email: [email protected] ABSTRACT This paper comprises the molecular approach for the identification of earthworm along with the traditional taxonomic method. The mitochondrial CO 1 gene of the Pontoscolex corethrurus (Glossoscolecidae), Travoscolides chengannures, Amynthas corticis, Perionyx sansibaricus (Megascolecidae), Progizzardus varadiamensis and Glyphidrilus annandalei (Almidae) were sequenced. The cytochrome-c oxidase I (CO1) exhibited a unique barcode to a particular species. The further exploration of mitochondrial diversity in earthworms will lead to major improvements in our understanding of the evolutionary pathways and rates of the mitochondrial genome Key words: Barcoding, cytochrome c oxidase 1 (COI), 16S ribosomal DNA INTRODUCTION DNA barcoding is a taxonomic method that uses a short genetic marker in the DNA to identify an organism. It differs from molecular phylogeny in that the main goal is to identify an unknown sample in terms of a known classification [26]. DNA sequence can be used to identify different species, in the same way as the supermarket scanner uses the black stripes of the UPC barcode to identify the items. This database will rapidly link a specimen to a Binomial Linnaean name and through that link it will provide all available information and studies on the species.